The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_AP019794	Thermus thermophilus strain AA2-29	1929011	1424154	1462517	1929011	tRNA,transposase,protease	Staphylococcus_phage(33.33%)	37	NA	NA
WP_143586177.1|1424154_1425486_-|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_172619145.1|1425536_1425704_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143586179.1|1425700_1426459_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA	NA
WP_143586181.1|1426463_1427108_+	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA	A0A1V0SIZ6	Klosneuvirus	30.0	7.5e-15
WP_008632957.1|1427097_1428066_+	class II fructose-bisphosphatase	NA	NA	NA	NA	NA
WP_143586184.1|1428187_1429225_+	alanine dehydrogenase	NA	NA	NA	NA	NA
WP_143586185.1|1429221_1430556_+	acetyl-CoA hydrolase/transferase family protein	NA	NA	NA	NA	NA
WP_143586187.1|1430665_1431421_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_143586189.1|1431402_1432716_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_143586191.1|1432702_1433002_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143586193.1|1433118_1434387_+|tRNA	aspartate--tRNA(Asn) ligase	tRNA	A0A2I2L4Y8	Orpheovirus	36.6	6.1e-61
WP_143586196.1|1434470_1435025_+|protease	DJ-1/PfpI/YhbO family deglycase/protease	protease	NA	NA	NA	NA
WP_143584933.1|1435117_1436218_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_143586198.1|1436275_1436974_-	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_014510641.1|1436983_1438717_-	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA	NA
WP_008632977.1|1438718_1439114_-	succinate dehydrogenase hydrophobic membrane anchor subunit	NA	NA	NA	NA	NA
WP_014629235.1|1439103_1439469_-	succinate dehydrogenase, cytochrome b556 subunit	NA	NA	NA	NA	NA
WP_172619231.1|1439764_1440199_+	adenosylmethionine decarboxylase	NA	A0A1D7SEZ2	Cyanophage	38.6	4.1e-09
WP_014629233.1|1440286_1441432_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_143586202.1|1441433_1442357_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.9	7.4e-32
WP_008632987.1|1442346_1443303_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_011173512.1|1443319_1443700_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_143586204.1|1443687_1444314_-	phosphoribosyl transferase	NA	NA	NA	NA	NA
WP_143586206.1|1444389_1446072_+	long-chain-fatty-acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	24.7	7.4e-38
WP_096412051.1|1446126_1446513_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_172596958.1|1446515_1446941_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_143586208.1|1447048_1448701_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	50.3	1.3e-148
WP_011228701.1|1448697_1449735_-	DUF815 domain-containing protein	NA	NA	NA	NA	NA
WP_143584079.1|1449915_1450605_-|transposase	IS5-like element ISTth7 family transposase	transposase	NA	NA	NA	NA
WP_143586210.1|1451064_1455543_+	glutamate synthase	NA	NA	NA	NA	NA
WP_143584174.1|1455611_1456645_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_143586975.1|1456610_1457117_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172619196.1|1457806_1458622_-	PhnD/SsuA/transferrin family substrate-binding protein	NA	NA	NA	NA	NA
WP_143586034.1|1458713_1459934_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_143586214.1|1460031_1460907_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_143586216.1|1460919_1461321_+	polysulfide reductase NrfD	NA	NA	NA	NA	NA
WP_143586218.1|1461272_1462517_-|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
>prophage 1
NZ_AP019795	Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence	215278	0	23231	215278		Bacillus_virus(100.0%)	19	NA	NA
WP_143587047.1|1034_2192_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_172619249.1|2184_2850_-	hypothetical protein	NA	NA	NA	NA	NA
WP_143587051.1|3056_4001_-	DNA methylase N-4/N-6 domain-containing protein	NA	NA	NA	NA	NA
WP_143587053.1|5999_6989_+	WYL domain-containing protein	NA	NA	NA	NA	NA
WP_143587055.1|6985_9745_+	CRISPR-associated endonuclease Cas3''	NA	NA	NA	NA	NA
WP_143587058.1|9794_11276_+	type I-E CRISPR-associated protein Cse1/CasA	NA	NA	NA	NA	NA
WP_143587059.1|11272_11764_+	type I-E CRISPR-associated protein Cse2/CasB	NA	NA	NA	NA	NA
WP_143587061.1|11767_12883_+	type I-E CRISPR-associated protein Cas7/Cse4/CasC	NA	NA	NA	NA	NA
WP_143587063.1|12884_13559_+	type I-E CRISPR-associated protein Cas5/CasD	NA	NA	NA	NA	NA
WP_143587065.1|13545_14181_+	type I-E CRISPR-associated protein Cas6/Cse3/CasE	NA	NA	NA	NA	NA
WP_143587068.1|14190_15168_+	type I-E CRISPR-associated endonuclease Cas1	NA	NA	NA	NA	NA
WP_172619236.1|15121_15499_+	type I-E CRISPR-associated endoribonuclease Cas2	NA	NA	NA	NA	NA
WP_143587071.1|16512_17265_-	5-oxoprolinase subunit PxpA	NA	NA	NA	NA	NA
WP_014630446.1|17277_17964_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_014630447.1|17966_19268_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_143587073.1|19264_19720_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_143587075.1|19719_20676_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_014630451.1|21694_22471_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_014630452.1|22457_23231_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.8	9.2e-28
>prophage 2
NZ_AP019795	Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence	215278	29877	31098	215278	transposase	uncultured_virus(100.0%)	1	NA	NA
WP_143587230.1|29877_31098_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	35.4	3.1e-22
>prophage 3
NZ_AP019795	Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence	215278	37140	37800	215278		Bacillus_phage(100.0%)	1	NA	NA
WP_143587098.1|37140_37800_-	winged helix-turn-helix domain-containing protein	NA	W8CYM9	Bacillus_phage	32.7	3.7e-25
>prophage 4
NZ_AP019795	Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence	215278	43625	100981	215278	transposase,protease	Synechococcus_phage(18.18%)	61	NA	NA
WP_143590100.1|43625_44834_+	trypsin-like peptidase domain-containing protein	NA	A0A1B1IT49	uncultured_Mediterranean_phage	33.5	2.5e-19
WP_143587370.1|44845_45667_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A1V0SCZ1	Indivirus	30.6	9.8e-12
WP_143587112.1|45761_47144_+	glucose-6-phosphate dehydrogenase	NA	E3SJC5	Synechococcus_phage	36.8	3.5e-70
WP_172619239.1|47147_48056_+	NADP-dependent phosphogluconate dehydrogenase	NA	A0A1D7SKG4	Cyanophage	37.9	6.5e-49
WP_143587114.1|48052_48700_+	6-phosphogluconolactonase	NA	NA	NA	NA	NA
WP_143587116.1|48700_50974_+	glucan 1,4-alpha-glucosidase	NA	NA	NA	NA	NA
WP_143587118.1|50977_51571_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_143587120.1|51580_52156_+	TSUP family transporter	NA	NA	NA	NA	NA
WP_143587122.1|52159_52510_+	DUF1634 domain-containing protein	NA	NA	NA	NA	NA
WP_143587124.1|52561_53062_+	VIT family protein	NA	NA	NA	NA	NA
WP_172619240.1|53087_53711_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_143587128.1|53809_54226_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_143587130.1|54280_54751_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143587132.1|54753_55404_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_143587134.1|56184_57258_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_143587136.1|57282_58236_+	PIG-L family deacetylase	NA	NA	NA	NA	NA
WP_143587138.1|58232_58751_-	DUF421 domain-containing protein	NA	NA	NA	NA	NA
WP_143587374.1|58832_60062_+	Nramp family divalent metal transporter	NA	NA	NA	NA	NA
WP_143587140.1|60122_60665_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143587142.1|60966_62634_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_143587144.1|62643_63885_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	37.9	4.0e-33
WP_143587146.1|64008_64329_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_143587150.1|64512_65559_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143587152.1|65605_66790_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_172619241.1|66966_67116_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081490856.1|67278_67557_+	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA	NA
WP_143587154.1|67583_67946_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_143587376.1|68502_68907_+|transposase	IS200/IS605 family transposase	transposase	A0A0A8WIU6	Clostridium_phage	45.4	5.9e-26
WP_143587156.1|68903_70106_+|transposase	transposase	transposase	A0A068A1P5	Thermus_phage	40.1	2.0e-69
WP_143587158.1|70118_70370_+	site-specific DNA-methyltransferase	NA	M4QPL0	Synechococcus_phage	51.2	1.2e-16
WP_143587160.1|72220_72448_+	DUF2141 domain-containing protein	NA	NA	NA	NA	NA
WP_143587163.1|73715_73898_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
WP_143587165.1|74016_75189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143587167.1|75270_75813_+	YceI family protein	NA	NA	NA	NA	NA
WP_143587169.1|75809_76604_+	cytochrome c3 family protein	NA	NA	NA	NA	NA
WP_143587171.1|76600_77023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143587173.1|77019_77676_+	response regulator	NA	W8CYM9	Bacillus_phage	30.0	3.6e-17
WP_143587175.1|77672_78887_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_143587177.1|78870_79455_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143587178.1|79527_80489_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_011174362.1|80858_81272_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_143587181.1|81268_81499_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_143587378.1|81731_82694_+	recombinase XerD	NA	NA	NA	NA	NA
WP_172619242.1|82799_82952_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172619243.1|82948_83788_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_143587185.1|84016_84793_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_143587187.1|84800_86309_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_143587189.1|86319_87015_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_024119810.1|87011_87206_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_143587191.1|87206_87632_-	DMT family transporter	NA	NA	NA	NA	NA
WP_143587193.1|87634_88492_-	NAD-binding protein	NA	NA	NA	NA	NA
WP_143587195.1|88501_89545_-	4-hydroxy-2-oxovalerate aldolase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	31.5	5.2e-42
WP_143587197.1|89541_90462_-	acetaldehyde dehydrogenase (acetylating)	NA	G8DDL4	Micromonas_pusilla_virus	34.3	7.6e-37
WP_143587199.1|90443_91214_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_143587201.1|91388_91796_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_143587203.1|91796_92780_+	catechol 2,3-dioxygenase	NA	NA	NA	NA	NA
WP_143584933.1|93719_94820_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_143587207.1|95234_97040_+	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_143587209.1|97044_97698_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA	NA
WP_172619244.1|97786_98011_+	ferrous iron transport protein A	NA	NA	NA	NA	NA
WP_143587214.1|99397_100981_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	NA	NA	NA	NA
>prophage 5
NZ_AP019795	Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence	215278	108762	109983	215278	transposase	uncultured_virus(100.0%)	1	NA	NA
WP_143587230.1|108762_109983_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	35.4	3.1e-22
>prophage 6
NZ_AP019795	Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence	215278	124446	128489	215278		Mycobacterium_phage(33.33%)	5	NA	NA
WP_011174477.1|124446_125415_+	AAA family ATPase	NA	V5UP47	Mycobacterium_phage	28.3	6.0e-08
WP_143587253.1|125411_126305_+	ParB/RepB/Spo0J family partition protein	NA	S5WII0	Leptospira_phage	29.5	2.2e-12
WP_049793128.1|127095_127332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172619246.1|128028_128199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041444573.1|128195_128489_+	recombinase family protein	NA	A7RAM3	Paramecium_bursaria_Chlorella_virus	35.5	4.9e-06
>prophage 7
NZ_AP019795	Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence	215278	144067	152421	215278		Mollivirus(25.0%)	8	NA	NA
WP_143587278.1|144067_145237_-	cytochrome P450	NA	A0A0M4JJK6	Mollivirus	34.6	8.8e-14
WP_143587280.1|145422_146685_-	deoxyribodipyrimidine photo-lyase	NA	A0A167RC11	Powai_lake_megavirus	29.4	3.1e-33
WP_172619247.1|146684_147536_-	phytoene/squalene synthase family protein	NA	NA	NA	NA	NA
WP_143587284.1|147645_148503_+	HTH-type transcriptional repressor CarH	NA	Q9EYF2	Enterobacteria_phage	30.2	1.5e-10
WP_143587286.1|148499_149087_+	transcriptional regulator LdrP	NA	NA	NA	NA	NA
WP_143587288.1|149087_149951_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_014511258.1|150167_151025_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_014511259.1|151110_152421_-	beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	36.5	2.0e-67
>prophage 8
NZ_AP019795	Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence	215278	155643	156636	215278		Enterobacteria_phage(100.0%)	1	NA	NA
WP_143587294.1|155643_156636_-	substrate-binding domain-containing protein	NA	C6ZCU4	Enterobacteria_phage	28.5	2.6e-19
>prophage 9
NZ_AP019795	Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence	215278	161647	162382	215278		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_143587307.1|161647_162382_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	39.3	2.8e-34
>prophage 10
NZ_AP019795	Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence	215278	188120	188684	215278		Cyanophage(100.0%)	1	NA	NA
WP_008631380.1|188120_188684_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	C7F482	Cyanophage	34.1	9.1e-17
>prophage 11
NZ_AP019795	Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence	215278	197288	207105	215278	transposase	Vaccinia_virus(25.0%)	7	NA	NA
WP_143587019.1|197288_199013_-	beta-galactosidase	NA	B9U1V4	Vaccinia_virus	25.9	3.9e-18
WP_143587021.1|199015_200269_-	MFS transporter	NA	NA	NA	NA	NA
WP_143587023.1|200282_201077_-	carbohydrate deacetylase	NA	NA	NA	NA	NA
WP_143587025.1|201195_202332_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A1L4BKQ8	Thermus_phage	42.7	3.8e-14
WP_143587027.1|203594_204791_+	hypothetical protein	NA	E5ERA2	Bathycoccus_sp._RCC1105_virus	34.5	8.7e-09
WP_143587029.1|204812_205595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_143587031.1|205929_207105_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A1P8DJG9	Virus_Rctr71	36.4	4.6e-47
