The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP041584	Campylobacter jejuni strain YH003 chromosome, complete genome	1743985	586440	687032	1743985	transposase,tail,terminase,integrase,protease,plate,tRNA	Campylobacter_phage(43.9%)	103	584136:584153	620809:620826
584136:584153	attL	TTTAGCTTGCAATGAGAT	NA	NA	NA	NA
WP_143298497.1|586440_588192_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SIS0	Klosneuvirus	29.9	1.2e-09
WP_002908825.1|588282_589143_+	NAD(+) kinase	NA	NA	NA	NA	NA
WP_002870093.1|589142_590666_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_002870095.1|590771_592016_+	bile resistance response regulator CbrR	NA	NA	NA	NA	NA
WP_002852210.1|592006_592822_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_143298499.1|592817_593939_+	transglycosylase SLT domain-containing protein	NA	A0A218M4G6	Pasteurella_phage	34.1	1.6e-09
WP_032582492.1|593898_594726_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	50.0	5.6e-23
WP_002872380.1|594731_595220_+	HAD-IIIA family hydrolase	NA	A0A140XBD6	Dickeya_phage	41.2	2.5e-15
WP_002859585.1|595210_595726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002859586.1|595707_596169_+	organic solvent tolerance protein OstA	NA	NA	NA	NA	NA
WP_002859990.1|596165_596762_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_143298501.1|597252_599058_+	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_002874300.1|599178_600969_-	aminopeptidase P family protein	NA	A0A0P0I8D7	Acinetobacter_phage	47.6	1.6e-160
WP_002867729.1|600984_602538_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	47.7	2.4e-128
WP_032600601.1|602736_603159_-	hypothetical protein	NA	A0A0P0IY73	Acinetobacter_phage	49.2	2.5e-27
WP_002869806.1|604352_604901_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079263615.1|604893_606000_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002869808.1|605986_606862_-	GTPase Era	NA	NA	NA	NA	NA
WP_002869809.1|606858_608178_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	28.4	2.3e-39
WP_002781630.1|608174_608717_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_002781628.1|608716_609160_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_002867646.1|609172_610393_-	argininosuccinate synthase	NA	NA	NA	NA	NA
WP_002864726.1|610548_610794_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA	NA
WP_002867644.1|610790_611198_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_002855252.1|611190_611919_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.8	1.4e-25
WP_002869812.1|611918_613169_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_002869813.1|613332_614757_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA	NA
WP_041016326.1|614947_615646_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002804144.1|615645_616320_-	LexA family transcriptional regulator	NA	X2KRC9	Campylobacter_phage	32.1	9.8e-26
WP_002804142.1|616469_616670_+	hypothetical protein	NA	NA	NA	NA	NA
WP_100620785.1|616666_618742_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_053872250.1|618912_619836_+	AAA family ATPase	NA	A0A2H4JAW1	uncultured_Caudovirales_phage	24.8	1.0e-09
WP_002795448.1|619838_620030_+	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA	NA
WP_002824157.1|620026_620212_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052798735.1|620268_620610_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002872701.1|620716_621202_+	host-nuclease inhibitor protein Gam	NA	A0A2K9VGT9	Faecalibacterium_phage	33.3	6.4e-19
620809:620826	attR	TTTAGCTTGCAATGAGAT	NA	NA	NA	NA
WP_002872702.1|621260_622223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002784531.1|622219_622489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002888024.1|622488_623181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002841916.1|623177_623627_+	DUF1018 domain-containing protein	NA	NA	NA	NA	NA
WP_053872248.1|623673_623949_+	hypothetical protein	NA	NA	NA	NA	NA
WP_053872247.1|623940_624612_-	deoxyribonuclease	NA	NA	NA	NA	NA
WP_002784523.1|624705_624990_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_053872246.1|625137_625500_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143298502.1|625520_626498_-|tail	phage tail protein	tail	A0A219Y9Y2	Aeromonas_phage	25.7	6.2e-13
WP_002784520.1|626491_626683_-|tail	tail protein	tail	NA	NA	NA	NA
WP_002784519.1|626675_627050_-|tail	tail protein	tail	NA	NA	NA	NA
WP_002888039.1|627175_628414_-	hypothetical protein	NA	M4M9M5	Vibrio_phage	29.8	1.9e-19
WP_004297439.1|628415_629786_-	DUF935 family protein	NA	A0A2H4JHL1	uncultured_Caudovirales_phage	26.6	5.8e-17
WP_143298504.1|629795_631466_-|terminase	phage terminase large subunit	terminase	A0A0A1IW02	Pseudomonas_phage	41.1	5.7e-91
WP_002803360.1|631465_632065_-	DUF1804 family protein	NA	NA	NA	NA	NA
WP_002855185.1|632057_632516_-	DUF1320 family protein	NA	NA	NA	NA	NA
WP_002784507.1|632630_633608_-	hypothetical protein	NA	R9TRN2	Rhizobium_phage	23.4	3.3e-06
WP_002875114.1|633610_634138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002901531.1|634140_634956_-	hypothetical protein	NA	A0A2H4JAW3	uncultured_Caudovirales_phage	48.4	2.9e-24
WP_002784501.1|634957_635392_-	hypothetical protein	NA	NA	NA	NA	NA
WP_052806131.1|635539_635929_+	DUF882 domain-containing protein	NA	A0A1X9Q0V8	Human_gokushovirus	46.3	1.4e-21
WP_002827119.1|635939_636281_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002784496.1|636277_636526_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002784492.1|636637_636952_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002803379.1|636951_637584_+|plate	phage baseplate assembly protein V	plate	V5YUM9	Pseudomonas_phage	34.6	1.3e-08
WP_002795238.1|637592_637784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002795239.1|637780_638071_+|plate	baseplate assembly protein	plate	Q8H9N4	Vibrio_phage	40.8	2.7e-09
WP_052806132.1|638067_639234_+|plate	baseplate assembly protein	plate	A0A1X9SH02	Bradyrhizobium_phage	25.8	3.3e-13
WP_002864870.1|639230_639851_+|tail	phage tail protein I	tail	A7YGM6	Campylobacter_phage	97.4	2.8e-59
WP_137075720.1|639850_640930_+|tail	phage tail protein	tail	A7YGV0	Campylobacter_phage	100.0	3.9e-149
WP_002903450.1|640939_641446_+	DUF4376 domain-containing protein	NA	A7YGY7	Campylobacter_phage	97.0	1.2e-84
WP_061563589.1|641442_641814_+	DUF1353 domain-containing protein	NA	A7YGH7	Campylobacter_phage	99.2	5.7e-68
WP_141079501.1|641938_642952_+	hypothetical protein	NA	A7YGH6	Campylobacter_phage	98.5	1.5e-187
WP_143298505.1|642970_644164_+|tail	phage tail sheath family protein	tail	A7YGF4	Campylobacter_phage	99.5	3.2e-197
WP_002865376.1|644190_644700_+|tail	tail protein	tail	A7YG76	Campylobacter_phage	100.0	3.3e-90
WP_002843342.1|644852_645092_+|tail	phage tail assembly protein	tail	A7YGZ3	Campylobacter_phage	62.5	3.2e-11
WP_002912416.1|645203_645509_-	hypothetical protein	NA	A7YGX3	Campylobacter_phage	90.1	4.7e-36
WP_053872236.1|645550_647773_+|tail	phage tail tape measure protein	tail	A7YG97	Campylobacter_phage	98.8	0.0e+00
WP_002875578.1|647776_648265_+	virion morphogenesis protein	NA	A7YG96	Campylobacter_phage	100.0	1.6e-89
WP_002922158.1|648369_649185_+	DNA adenine methylase	NA	A7YG95	Campylobacter_phage	100.0	6.3e-152
WP_143298507.1|649212_649500_-	hypothetical protein	NA	A7YGG4	Campylobacter_phage	98.9	5.6e-47
WP_002875224.1|649579_649774_-	hypothetical protein	NA	A7YG72	Campylobacter_phage	98.4	5.1e-28
WP_002865000.1|649783_650104_-	hypothetical protein	NA	A7YGI4	Campylobacter_phage	100.0	1.3e-52
WP_032582421.1|650184_650814_-	LexA family transcriptional regulator	NA	A7YGK7	Campylobacter_phage	100.0	2.6e-60
WP_143298509.1|650893_652582_-	AAA family ATPase	NA	X2KLG0	Campylobacter_phage	37.6	5.8e-83
WP_002869815.1|658231_660205_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_002852327.1|660358_660589_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002854947.1|660578_660821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002852324.1|660817_661255_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_002860009.1|661236_663090_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_002854766.1|664638_665712_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_002864738.1|665741_666440_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010790824.1|666529_668035_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_002876117.1|668048_669239_+	acetate kinase	NA	NA	NA	NA	NA
WP_143298511.1|669266_673019_-	restriction endonuclease	NA	A0A1B1IUC6	uncultured_Mediterranean_phage	24.0	6.2e-45
WP_002852223.1|673167_673659_+	hypothetical protein	NA	NA	NA	NA	NA
WP_079351421.1|674580_675519_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_074484732.1|677163_678552_+	cell division protein FtsA	NA	NA	NA	NA	NA
WP_002852071.1|678567_679680_+	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_002869823.1|679835_680648_+	flagellar hook-basal body protein	NA	NA	NA	NA	NA
WP_002852142.1|680678_681470_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_002852312.1|681536_682967_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_002852254.1|683170_683866_+	chemotaxis protein	NA	NA	NA	NA	NA
WP_002886337.1|683862_685116_+	U32 family peptidase	NA	Q6DW11	Phage_TP	31.1	5.5e-38
WP_002886339.1|685116_685611_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA	NA
WP_002852251.1|685620_686157_+	DUF3972 domain-containing protein	NA	NA	NA	NA	NA
WP_002860023.1|686168_687032_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
>prophage 2
NZ_CP041584	Campylobacter jejuni strain YH003 chromosome, complete genome	1743985	964142	1016340	1743985	integrase,protease,plate,tRNA	Phaeocystis_globosa_virus(25.0%)	39	973683:973700	987477:987494
WP_002870052.1|964142_964661_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_002853001.1|964759_965176_+	PepSY-like domain-containing protein	NA	NA	NA	NA	NA
WP_002886756.1|965184_966795_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	R4TQL5	Phaeocystis_globosa_virus	44.4	1.7e-71
WP_002870050.1|966798_968049_-|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	tRNA	NA	NA	NA	NA
WP_002852957.1|968045_969617_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_002852978.1|969613_970669_-	3-dehydroquinate synthase	NA	A0A0P0C619	Ostreococcus_mediterraneus_virus	35.0	5.7e-28
WP_002870049.1|970714_972115_-	potassium transporter TrkA	NA	NA	NA	NA	NA
WP_002912984.1|972144_973266_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	38.8	3.7e-70
WP_002912988.1|973267_974035_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
973683:973700	attL	ATTTAAAAATTTTAAATT	NA	NA	NA	NA
WP_074482857.1|974509_974938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002887134.1|974981_975920_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_002834760.1|976079_976310_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032600723.1|976321_976549_+	WGR domain-containing protein	NA	NA	NA	NA	NA
WP_002887129.1|977208_977496_-	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
WP_002782139.1|977914_978142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052790989.1|982165_982969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020853159.1|982991_984284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079460556.1|987787_989173_-	hypothetical protein	NA	NA	NA	NA	NA
987477:987494	attR	ATTTAAAAATTTTAAATT	NA	NA	NA	NA
WP_052775879.1|989784_990294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016818321.1|990412_990916_-	hypothetical protein	NA	NA	NA	NA	NA
WP_052775878.1|990916_992449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042635852.1|992590_992908_-	hypothetical protein	NA	NA	NA	NA	NA
WP_052775877.1|992915_994439_-	DUF2974 domain-containing protein	NA	NA	NA	NA	NA
WP_002867905.1|994453_994708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002870192.1|994695_995019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043019061.1|995545_996133_+	lysozyme	NA	D6QWN8	uncultured_phage	35.7	1.7e-13
WP_002779560.1|996161_996521_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002913316.1|996789_1000722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042635858.1|1000740_1002009_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002779664.1|1002012_1002912_-	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_002779662.1|1006552_1007068_+	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_002869988.1|1007317_1008091_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
WP_002779660.1|1008087_1009485_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_069360599.1|1009494_1009920_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_002800584.1|1011380_1011866_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_002869989.1|1011867_1013322_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_002779655.1|1013324_1013717_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_002779654.1|1013713_1015435_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_072221508.1|1015431_1016340_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
>prophage 3
NZ_CP041584	Campylobacter jejuni strain YH003 chromosome, complete genome	1743985	1457446	1465910	1743985		Synechococcus_phage(57.14%)	9	NA	NA
WP_002903944.1|1457446_1458169_-	capsular polysaccharide biosynthesis protein	NA	E3SJ89	Synechococcus_phage	26.7	2.9e-15
WP_002903942.1|1458165_1459689_-	hypothetical protein	NA	B2ZYD9	Ralstonia_phage	27.5	5.3e-35
WP_014516848.1|1459685_1460084_-	capsule biosynthesis phosphatase	NA	A0A2K9L0P7	Tupanvirus	41.0	1.7e-09
WP_002903935.1|1460123_1462043_-	hypothetical protein	NA	E3SJ94	Synechococcus_phage	27.8	2.9e-06
WP_002903931.1|1462036_1463896_-	methyltransferase domain-containing protein	NA	M4QRS6	Synechococcus_phage	40.2	3.0e-56
WP_002826454.1|1463892_1464222_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014516850.1|1464224_1464560_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_002903928.1|1464552_1465278_-	NTP transferase domain-containing protein	NA	A0A1D8KNV9	Synechococcus_phage	33.6	9.2e-30
WP_057981435.1|1465271_1465910_-	HAD family phosphatase	NA	M1I080	Acanthocystis_turfacea_Chlorella_virus	42.8	6.4e-35
