assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007106565.1_ASM710656v1	NZ_CP041513	Shigella boydii strain KCCM 41690 chromosome, complete genome	1	2820404-2820545	1	CRISPRCasFinder	no		DinG,DEDDh,cas3,cas5,cas6e,cas2,csa3,c2c9_V-U4	Orphan	AATGCCTGATGCGACTCTTGTCGCGTCTTATCATGCCTACA	41	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,cas5,cas6e,cas2,csa3,c2c9_V-U4,RT	NA,NA|50aa|down_6|NZ_CP041513.1_2828992_2829142_-	NA|79aa|up_9|NZ_CP041513.1_2811907_2812144_+	pfam07256, DUF1435, Protein of unknown function (DUF1435)	NA|344aa|up_8|NZ_CP041513.1_2812771_2813803_-	PRK09489, rsmC, 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	NA|138aa|up_7|NZ_CP041513.1_2813905_2814319_+	PRK06856, PRK06856, DNA polymerase III subunit psi; Validated	NA|149aa|up_6|NZ_CP041513.1_2814287_2814734_+	PRK09491, rimI, ribosomal-protein-alanine N-acetyltransferase; Provisional	NA|226aa|up_5|NZ_CP041513.1_2814748_2815426_+	PRK09449, PRK09449, dUMP phosphatase; Provisional	NA|530aa|up_4|NZ_CP041513.1_2815516_2817106_+	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|202aa|up_3|NZ_CP041513.1_2817498_2818104_+	PRK10568, PRK10568, molecular chaperone OsmY	NA|54aa|up_2|NZ_CP041513.1_2818230_2818392_+	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|358aa|up_1|NZ_CP041513.1_2818513_2819587_+	COG4667, COG4667, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|261aa|up_0|NZ_CP041513.1_2819583_2820366_+	PRK11449, PRK11449, metal-dependent hydrolase	NA|288aa|down_0|NZ_CP041513.1_2820579_2821443_-	TIGR04041, glycine_radical_enzyme_activase_YjjW_family, glycine radical enzyme activase, YjjW family	NA|383aa|down_1|NZ_CP041513.1_2822786_2823934_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|260aa|down_2|NZ_CP041513.1_2824415_2825195_+	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional	NA|441aa|down_3|NZ_CP041513.1_2825321_2826644_+	PRK05820, deoA, thymidine phosphorylase; Reviewed	NA|408aa|down_4|NZ_CP041513.1_2826695_2827919_+	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|240aa|down_5|NZ_CP041513.1_2827998_2828718_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|50aa|down_6|NZ_CP041513.1_2828992_2829142_-	NA	NA|339aa|down_7|NZ_CP041513.1_2829173_2830190_-	PRK03822, lplA, lipoate-protein ligase A; Provisional	NA|215aa|down_8|NZ_CP041513.1_2830217_2830862_-	PRK11246, PRK11246, YtjB family periplasmic protein	NA|323aa|down_9|NZ_CP041513.1_2830967_2831936_+	PRK11133, serB, phosphoserine phosphatase; Provisional
GCF_007106565.1_ASM710656v1	NZ_CP041513	Shigella boydii strain KCCM 41690 chromosome, complete genome	2	2905443-2905558	2	CRISPRCasFinder	no		DinG,DEDDh,cas3,cas5,cas6e,cas2,csa3,c2c9_V-U4	Orphan	GATAAGACGCGCCAGCGTCGCATCAGGCGTT	31	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,cas5,cas6e,cas2,csa3,c2c9_V-U4,RT	NA,NA	NA|126aa|up_9|NZ_CP041513.1_2891448_2891826_-	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|274aa|up_8|NZ_CP041513.1_2891828_2892650_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_7|NZ_CP041513.1_2892646_2893636_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_6|NZ_CP041513.1_2893635_2894922_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|785aa|up_5|NZ_CP041513.1_2894974_2897329_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|272aa|up_4|NZ_CP041513.1_2897583_2898399_+	PRK09430, djlA, co-chaperone DjlA	NA|220aa|up_3|NZ_CP041513.1_2898515_2899175_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|up_2|NZ_CP041513.1_2899186_2902093_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|up_1|NZ_CP041513.1_2902256_2904608_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|up_0|NZ_CP041513.1_2904682_2905378_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_0|NZ_CP041513.1_2905577_2907080_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|567aa|down_1|NZ_CP041513.1_2907090_2908791_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|293aa|down_2|NZ_CP041513.1_2909129_2910008_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|255aa|down_3|NZ_CP041513.1_2910093_2910858_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_4|NZ_CP041513.1_2910971_2911670_-	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|537aa|down_5|NZ_CP041513.1_2911653_2913264_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|328aa|down_6|NZ_CP041513.1_2913239_2914223_-	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|552aa|down_7|NZ_CP041513.1_2914386_2916042_-	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|44aa|down_8|NZ_CP041513.1_2916130_2916262_+	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|361aa|down_9|NZ_CP041513.1_2916363_2917446_+	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter
GCF_007106565.1_ASM710656v1	NZ_CP041513	Shigella boydii strain KCCM 41690 chromosome, complete genome	3	2971441-2971572	3	CRISPRCasFinder	no		DinG,DEDDh,cas3,cas5,cas6e,cas2,csa3,c2c9_V-U4	Orphan	TCTCTTCGCTGCTGGATCTGTGGGTTAGTCTGCATT	36	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,cas5,cas6e,cas2,csa3,c2c9_V-U4,RT	NA,NA	NA|116aa|up_9|NZ_CP041513.1_2954922_2955270_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|127aa|up_8|NZ_CP041513.1_2955266_2955647_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|298aa|up_7|NZ_CP041513.1_2959505_2960399_-	PRK09016, PRK09016, carboxylating nicotinate-nucleotide diphosphorylase	NA|184aa|up_6|NZ_CP041513.1_2960486_2961038_+	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|285aa|up_5|NZ_CP041513.1_2961034_2961889_+	pfam17113, AmpE, Regulatory signalling modulator protein AmpE	NA|458aa|up_4|NZ_CP041513.1_2961931_2963305_-	PRK10238, PRK10238, aromatic amino acid transporter AroP	NA|255aa|up_3|NZ_CP041513.1_2963845_2964610_+	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR	NA|888aa|up_2|NZ_CP041513.1_2964770_2967434_+	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|631aa|up_1|NZ_CP041513.1_2967448_2969341_+	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|475aa|up_0|NZ_CP041513.1_2969665_2971090_+	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|866aa|down_0|NZ_CP041513.1_2973368_2975966_+	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|121aa|down_1|NZ_CP041513.1_2976140_2976503_+	PRK05248, PRK05248, hypothetical protein; Provisional	NA|265aa|down_2|NZ_CP041513.1_2976539_2977334_-	PRK05462, PRK05462, adenosylmethionine decarboxylase	NA|289aa|down_3|NZ_CP041513.1_2977349_2978216_-	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|116aa|down_4|NZ_CP041513.1_2978321_2978669_-	pfam09691, T2SS_PulS_OutS, Type II secretion system pilotin lipoprotein (PulS_OutS)	NA|517aa|down_5|NZ_CP041513.1_2978834_2980385_+	PRK10965, PRK10965, multicopper oxidase; Provisional	NA|763aa|down_6|NZ_CP041513.1_2980491_2982780_-	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|179aa|down_7|NZ_CP041513.1_2982985_2983522_+	PRK15423, PRK15423, hypoxanthine phosphoribosyltransferase; Provisional	NA|221aa|down_8|NZ_CP041513.1_2983562_2984225_-	PRK10437, PRK10437, carbonic anhydrase; Provisional	NA|309aa|down_9|NZ_CP041513.1_2984333_2985260_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]
