assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006974165.1_ASM697416v1	NZ_CP040363	Klebsiella pneumoniae strain R50 chromosome, complete genome	1	644886-645160	1	PILER-CR	no		DinG,WYL,DEDDh,cas3,csa3	Orphan	ACGGAGCCGCTTTTTTGCCGGGTGGCGGCTGCGCCTTACCCGGCCTACAGGG	52	0	0	NA	NA	NA	2	2	Orphan	DinG,WYL,DEDDh,cas3,csa3,RT	NA|548aa|up_8|NZ_CP040363.1_633771_635415_-,NA|104aa|down_2|NZ_CP040363.1_646851_647163_+,NA|69aa|down_7|NZ_CP040363.1_653227_653434_-,NA|145aa|down_9|NZ_CP040363.1_654131_654566_+	NA|237aa|up_9|NZ_CP040363.1_633092_633803_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|548aa|up_8|NZ_CP040363.1_633771_635415_-	NA	NA|842aa|up_7|NZ_CP040363.1_635404_637930_-	pfam15976, CooC_C, CS1-pili formation C-terminal	NA|223aa|up_6|NZ_CP040363.1_637955_638624_-	pfam18649, EcpB_C, EcpB C-terminal domain	NA|196aa|up_5|NZ_CP040363.1_638682_639270_-	pfam16449, MatB, Fimbrillin MatB	NA|181aa|up_4|NZ_CP040363.1_639344_639887_-	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins	NA|281aa|up_3|NZ_CP040363.1_640734_641577_+	COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|313aa|up_2|NZ_CP040363.1_641599_642538_+	TIGR03431, PhnD, phosphonate ABC transporter, periplasmic phosphonate binding protein	NA|291aa|up_1|NZ_CP040363.1_642604_643477_+	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|295aa|up_0|NZ_CP040363.1_643473_644358_+	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|222aa|down_0|NZ_CP040363.1_645217_645883_-	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C	NA|290aa|down_1|NZ_CP040363.1_645978_646848_-	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional	NA|104aa|down_2|NZ_CP040363.1_646851_647163_+	NA	NA|189aa|down_3|NZ_CP040363.1_647260_647827_+	PRK10838, spr, bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	NA|351aa|down_4|NZ_CP040363.1_647871_648924_-	PRK10159, PRK10159, phosphoporin PhoE	NA|368aa|down_5|NZ_CP040363.1_649213_650317_+	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|418aa|down_6|NZ_CP040363.1_650327_651581_+	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional	NA|69aa|down_7|NZ_CP040363.1_653227_653434_-	NA	NA|186aa|down_8|NZ_CP040363.1_653435_653993_-	cd01192, INT_C_like_3, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|145aa|down_9|NZ_CP040363.1_654131_654566_+	NA
GCF_006974165.1_ASM697416v1	NZ_CP040363	Klebsiella pneumoniae strain R50 chromosome, complete genome	2	706862-706994	1	CRISPRCasFinder	no	DEDDh	DinG,WYL,DEDDh,cas3,csa3	Unclear	TGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAG	43	0	0	NA	NA	NA	1	1	Orphan	DinG,WYL,DEDDh,cas3,csa3,RT	NA,NA	NA|266aa|up_9|NZ_CP040363.1_698262_699060_+	cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR	NA|139aa|up_8|NZ_CP040363.1_699092_699509_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|71aa|up_7|NZ_CP040363.1_699666_699879_+	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|133aa|up_6|NZ_CP040363.1_700246_700645_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_5|NZ_CP040363.1_700702_701947_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_4|NZ_CP040363.1_702052_702511_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_3|NZ_CP040363.1_702768_704226_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|151aa|up_2|NZ_CP040363.1_704268_704721_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|352aa|up_1|NZ_CP040363.1_704723_705779_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|287aa|up_0|NZ_CP040363.1_705938_706799_+	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins	NA|72aa|down_0|NZ_CP040363.1_707021_707237_-	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|408aa|down_1|NZ_CP040363.1_707239_708463_-	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|199aa|down_2|NZ_CP040363.1_708475_709072_-	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|213aa|down_3|NZ_CP040363.1_709078_709717_-	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|265aa|down_4|NZ_CP040363.1_709709_710504_-	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|413aa|down_5|NZ_CP040363.1_710496_711735_-	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|448aa|down_6|NZ_CP040363.1_711738_713082_-	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|247aa|down_7|NZ_CP040363.1_713493_714234_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_8|NZ_CP040363.1_714204_714972_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|194aa|down_9|NZ_CP040363.1_715046_715628_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase
GCF_006974165.1_ASM697416v1	NZ_CP040363	Klebsiella pneumoniae strain R50 chromosome, complete genome	3	2944476-2944584	2	CRISPRCasFinder	no		DinG,WYL,DEDDh,cas3,csa3	Orphan	TGTCCCACCCTGTACCACTTTTTTTAA	27	0	0	NA	NA	NA	1	1	Orphan	DinG,WYL,DEDDh,cas3,csa3,RT	NA|182aa|up_9|NZ_CP040363.1_2937862_2938408_-,NA|82aa|up_7|NZ_CP040363.1_2939252_2939498_-,NA|69aa|up_6|NZ_CP040363.1_2939895_2940102_-,NA|1268aa|down_2|NZ_CP040363.1_2947402_2951206_-,NA|216aa|down_3|NZ_CP040363.1_2951394_2952042_-	NA|182aa|up_9|NZ_CP040363.1_2937862_2938408_-	NA	NA|150aa|up_8|NZ_CP040363.1_2938429_2938879_-	pfam05069, Phage_tail_S, Phage virion morphogenesis family	NA|82aa|up_7|NZ_CP040363.1_2939252_2939498_-	NA	NA|69aa|up_6|NZ_CP040363.1_2939895_2940102_-	NA	NA|338aa|up_5|NZ_CP040363.1_2940542_2941556_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|327aa|up_4|NZ_CP040363.1_2941566_2942547_-	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism]	NA|125aa|up_3|NZ_CP040363.1_2942543_2942918_-	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism]	NA|174aa|up_2|NZ_CP040363.1_2942914_2943436_-	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism]	NA|95aa|up_1|NZ_CP040363.1_2943548_2943833_-	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding	NA|119aa|up_0|NZ_CP040363.1_2943927_2944284_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|690aa|down_0|NZ_CP040363.1_2944602_2946672_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|72aa|down_1|NZ_CP040363.1_2946707_2946923_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|1268aa|down_2|NZ_CP040363.1_2947402_2951206_-	NA	NA|216aa|down_3|NZ_CP040363.1_2951394_2952042_-	NA	NA|161aa|down_4|NZ_CP040363.1_2953963_2954446_-	PRK05422, smpB, SsrA-binding protein SmpB	NA|159aa|down_5|NZ_CP040363.1_2954556_2955033_+	PRK10724, PRK10724, type II toxin-antitoxin system RatA family toxin	NA|97aa|down_6|NZ_CP040363.1_2955022_2955313_+	PRK01777, PRK01777, RnfH family protein	NA|114aa|down_7|NZ_CP040363.1_2955379_2955721_-	PRK11548, PRK11548, outer membrane protein assembly factor BamE	NA|554aa|down_8|NZ_CP040363.1_2955868_2957530_-	PRK10869, PRK10869, recombination and repair protein; Provisional	NA|293aa|down_9|NZ_CP040363.1_2957616_2958495_-	PRK03378, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional
GCF_006974165.1_ASM697416v1	NZ_CP040363	Klebsiella pneumoniae strain R50 chromosome, complete genome	4	3813616-3813717	3	CRISPRCasFinder	no		DinG,WYL,DEDDh,cas3,csa3	Orphan	TGTAGCCTCGCTAAGCGAAGCGCGAGCGATGAGA	34	0	0	NA	NA	NA	1	1	Orphan	DinG,WYL,DEDDh,cas3,csa3,RT	NA,NA|62aa|down_8|NZ_CP040363.1_3823811_3823997_+	NA|461aa|up_9|NZ_CP040363.1_3799534_3800917_+	PRK10177, PRK10177, YchO/YchP family invasin	NA|217aa|up_8|NZ_CP040363.1_3800913_3801564_-	PRK10651, PRK10651, transcriptional regulator NarL; Provisional	NA|593aa|up_7|NZ_CP040363.1_3801574_3803353_-	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX	NA|463aa|up_6|NZ_CP040363.1_3803664_3805053_+	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional	NA|1248aa|up_5|NZ_CP040363.1_3805458_3809202_+	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion]	NA|512aa|up_4|NZ_CP040363.1_3809198_3810734_+	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|237aa|up_3|NZ_CP040363.1_3810730_3811441_+	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone	NA|226aa|up_2|NZ_CP040363.1_3811440_3812118_+	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain	NA|299aa|up_1|NZ_CP040363.1_3812114_3813011_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|148aa|up_0|NZ_CP040363.1_3813118_3813562_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|281aa|down_0|NZ_CP040363.1_3814641_3815484_-	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|153aa|down_1|NZ_CP040363.1_3815526_3815985_-	PRK01617, PRK01617, hypothetical protein; Provisional	NA|301aa|down_2|NZ_CP040363.1_3816097_3817000_+	PRK10279, PRK10279, patatin-like phospholipase RssA	NA|338aa|down_3|NZ_CP040363.1_3817089_3818103_+	PRK10693, PRK10693, two-component system response regulator RssB	NA|301aa|down_4|NZ_CP040363.1_3818300_3819203_+	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU	NA|136aa|down_5|NZ_CP040363.1_3819324_3819732_-	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS	NA|206aa|down_6|NZ_CP040363.1_3820293_3820911_+	PRK04296, PRK04296, thymidine kinase; Provisional	NA|892aa|down_7|NZ_CP040363.1_3821058_3823734_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|62aa|down_8|NZ_CP040363.1_3823811_3823997_+	NA	NA|216aa|down_9|NZ_CP040363.1_3824210_3824858_+	PRK11111, PRK11111, YchE family NAAT transporter
