assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006970865.1_ASM697086v1	NZ_CP035503	Rhodoferax sp. CHu59-6-5 chromosome, complete genome	1	1412644-1412746	1	CRISPRCasFinder	no		DEDDh,PD-DExK,DinG,WYL,Cas9_archaeal,csa3,RT	Orphan	GGCATCGGCTTTGGCGGCCTTGGCT	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,PD-DExK,DinG,WYL,Cas9_archaeal,csa3,RT	NA|94aa|up_7|NZ_CP035503.1_1401123_1401405_+,NA|51aa|up_6|NZ_CP035503.1_1401394_1401547_-,NA|190aa|down_8|NZ_CP035503.1_1422184_1422754_-	NA|357aa|up_9|NZ_CP035503.1_1399044_1400115_+	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones]	NA|228aa|up_8|NZ_CP035503.1_1400249_1400933_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|94aa|up_7|NZ_CP035503.1_1401123_1401405_+	NA	NA|51aa|up_6|NZ_CP035503.1_1401394_1401547_-	NA	NA|1244aa|up_5|NZ_CP035503.1_1401707_1405439_+	PLN02666, PLN02666, 5-oxoprolinase	NA|179aa|up_4|NZ_CP035503.1_1405523_1406060_+	COG2318, DinB, Uncharacterized protein conserved in bacteria [Function unknown]	NA|307aa|up_3|NZ_CP035503.1_1406007_1406928_-	cd08448, PBP2_LTTR_aromatics_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to regulators involved in the catabolism of aromatic compounds, contains type 2 periplasmic binding fold	NA|582aa|up_2|NZ_CP035503.1_1407025_1408771_+	cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product	NA|325aa|up_1|NZ_CP035503.1_1408857_1409832_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|373aa|up_0|NZ_CP035503.1_1409871_1410990_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|388aa|down_0|NZ_CP035503.1_1413324_1414488_-	PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional	NA|97aa|down_1|NZ_CP035503.1_1414477_1414768_-	pfam06305, LapA_dom, Lipopolysaccharide assembly protein A domain	NA|105aa|down_2|NZ_CP035503.1_1414813_1415128_-	PRK00199, ihfB, integration host factor subunit beta; Reviewed	NA|562aa|down_3|NZ_CP035503.1_1415215_1416901_-	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	NA|670aa|down_4|NZ_CP035503.1_1417079_1419089_-	PRK11860, PRK11860, bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidylate kinase	NA|293aa|down_5|NZ_CP035503.1_1419089_1419968_-	PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional	NA|361aa|down_6|NZ_CP035503.1_1419995_1421078_-	COG0077, PheA, Prephenate dehydratase [Amino acid transport and metabolism]	NA|369aa|down_7|NZ_CP035503.1_1421081_1422188_-	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase	NA|190aa|down_8|NZ_CP035503.1_1422184_1422754_-	NA	NA|882aa|down_9|NZ_CP035503.1_1422750_1425396_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated
GCF_006970865.1_ASM697086v1	NZ_CP035503	Rhodoferax sp. CHu59-6-5 chromosome, complete genome	2	1852277-1852374	2	CRISPRCasFinder	no		DEDDh,PD-DExK,DinG,WYL,Cas9_archaeal,csa3,RT	Orphan	AACGAGACCGAGCCAATGATCTG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,PD-DExK,DinG,WYL,Cas9_archaeal,csa3,RT	NA,NA|107aa|down_8|NZ_CP035503.1_1861117_1861438_-,NA|53aa|down_9|NZ_CP035503.1_1861436_1861595_+	NA|103aa|up_9|NZ_CP035503.1_1844530_1844839_+	PRK12863, PRK12863, YciI-like protein; Reviewed	NA|210aa|up_8|NZ_CP035503.1_1844868_1845498_+	cd05018, CoxG, Carbon monoxide dehydrogenase subunit G (CoxG)	NA|168aa|up_7|NZ_CP035503.1_1845509_1846013_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|267aa|up_6|NZ_CP035503.1_1846021_1846822_+	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|288aa|up_5|NZ_CP035503.1_1846865_1847729_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|251aa|up_4|NZ_CP035503.1_1847725_1848478_+	PRK08245, PRK08245, hypothetical protein; Validated	NA|146aa|up_3|NZ_CP035503.1_1848496_1848934_+	cd02238, cupin_KdgF, pectin degradation protein KdgF and related proteins, cupin domain	NA|269aa|up_2|NZ_CP035503.1_1848989_1849796_+	cd02064, FAD_synthetase_N, FAD synthetase, N-terminal domain of the bifunctional enzyme	NA|260aa|up_1|NZ_CP035503.1_1850016_1850796_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|253aa|up_0|NZ_CP035503.1_1850792_1851551_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|321aa|down_0|NZ_CP035503.1_1852532_1853495_-	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|223aa|down_1|NZ_CP035503.1_1853662_1854331_-	PRK06953, PRK06953, SDR family oxidoreductase	NA|528aa|down_2|NZ_CP035503.1_1854401_1855985_-	cd16028, PMH, Phosphonate monoester hydrolase/phosphodiesterase	NA|163aa|down_3|NZ_CP035503.1_1856113_1856602_+	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]	NA|329aa|down_4|NZ_CP035503.1_1856773_1857760_+	cd13576, PBP2_BugD_Asp, Aspartic acid transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|731aa|down_5|NZ_CP035503.1_1857847_1860040_+	smart01080, CHASE2, CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are parts of signal transduction pathways in bacteria	NA|202aa|down_6|NZ_CP035503.1_1860057_1860663_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|145aa|down_7|NZ_CP035503.1_1860659_1861094_-	COG4254, COG4254, Uncharacterized protein conserved in bacteria [Function unknown]	NA|107aa|down_8|NZ_CP035503.1_1861117_1861438_-	NA	NA|53aa|down_9|NZ_CP035503.1_1861436_1861595_+	NA
GCF_006970865.1_ASM697086v1	NZ_CP035503	Rhodoferax sp. CHu59-6-5 chromosome, complete genome	3	4336849-4336967	3	CRISPRCasFinder	no		DEDDh,PD-DExK,DinG,WYL,Cas9_archaeal,csa3,RT	Orphan	ATGGCCCCCACGCTTGTCACTTCGTGTACGGCGCT	35	1	2	4336884-4336932|4336884-4336932	NZ_CP035503.1_3702007-3702055|NZ_CP035503.1_32872-32920	NA	1	1	Orphan	DEDDh,PD-DExK,DinG,WYL,Cas9_archaeal,csa3,RT	NA,NA	NA|776aa|up_9|NZ_CP035503.1_4325519_4327847_-	pfam02738, Ald_Xan_dh_C2, Molybdopterin-binding domain of aldehyde dehydrogenase	NA|141aa|up_8|NZ_CP035503.1_4328014_4328437_+	cd08357, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) familyprotein, glyoxalase I, and type I ring-cleaving dioxygenases	NA|487aa|up_7|NZ_CP035503.1_4328449_4329910_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|156aa|up_6|NZ_CP035503.1_4329976_4330444_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|532aa|up_5|NZ_CP035503.1_4330440_4332036_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|318aa|up_4|NZ_CP035503.1_4332105_4333059_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_3|NZ_CP035503.1_4333076_4334354_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|290aa|up_2|NZ_CP035503.1_4334359_4335229_-	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|358aa|up_1|NZ_CP035503.1_4335225_4336299_-	COG2309, AmpS, Leucyl aminopeptidase (aminopeptidase T) [Amino acid transport and metabolism]	NA|169aa|up_0|NZ_CP035503.1_4336339_4336846_+	smart00903, Flavin_Reduct, Flavin reductase like domain	NA|140aa|down_0|NZ_CP035503.1_4336973_4337393_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|165aa|down_1|NZ_CP035503.1_4337389_4337884_+	pfam04972, BON, BON domain	NA|300aa|down_2|NZ_CP035503.1_4337898_4338798_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|181aa|down_3|NZ_CP035503.1_4338879_4339422_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|373aa|down_4|NZ_CP035503.1_4339529_4340648_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|58aa|down_5|NZ_CP035503.1_4340647_4340821_+	COG1773, COG1773, Rubredoxin [Energy production and conversion]	NA|275aa|down_6|NZ_CP035503.1_4340823_4341648_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|406aa|down_7|NZ_CP035503.1_4341659_4342877_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|250aa|down_8|NZ_CP035503.1_4342962_4343712_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|673aa|down_9|NZ_CP035503.1_4343733_4345752_-	PRK03584, PRK03584, acetoacetate--CoA ligase
