assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006969105.1_ASM696910v1	NZ_CP030266	Mycoplasma capricolum subsp. capripneumoniae strain JF6037 chromosome, complete genome	1	249338-249446	1	CRISPRCasFinder	no		DEDDh	Orphan	AAGGAATTTCTGTGTATTTACACACTTTTTCCTTA	35	0	0	NA	NA	NA	1	1	Orphan	DEDDh	NA|233aa|up_8|NZ_CP030266.1_220916_221615_+,NA|175aa|up_4|NZ_CP030266.1_232673_233198_+,NA|122aa|down_3|NZ_CP030266.1_254365_254731_-,NA|65aa|down_4|NZ_CP030266.1_254914_255109_-,NA|146aa|down_5|NZ_CP030266.1_255305_255743_-,NA|104aa|down_6|NZ_CP030266.1_256040_256352_-,NA|127aa|down_7|NZ_CP030266.1_257032_257413_+,NA|383aa|down_8|NZ_CP030266.1_257375_258524_-,NA|289aa|down_9|NZ_CP030266.1_259065_259932_-	NA|1028aa|up_9|NZ_CP030266.1_217165_220249_+	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold	NA|233aa|up_8|NZ_CP030266.1_220916_221615_+	NA	NA|294aa|up_7|NZ_CP030266.1_223501_224383_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|547aa|up_6|NZ_CP030266.1_224416_226057_-	TIGR03490, Uncharacterized_lipoprotein_lpp, mycoides cluster lipoprotein, LppA/P72 family	NA|600aa|up_5|NZ_CP030266.1_226794_228594_-	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins	NA|175aa|up_4|NZ_CP030266.1_232673_233198_+	NA	NA|598aa|up_3|NZ_CP030266.1_244068_245862_-	TIGR00181, Oligoendopeptidase_F_homolog, oligoendopeptidase F	NA|228aa|up_2|NZ_CP030266.1_245861_246545_-	cd17495, RMtype1_S_Cep9333ORF4827P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Crinalium epipsammum S subunit (S	NA|452aa|up_1|NZ_CP030266.1_246561_247917_-	pfam00883, Peptidase_M17, Cytosol aminopeptidase family, catalytic domain	NA|434aa|up_0|NZ_CP030266.1_248032_249334_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|207aa|down_0|NZ_CP030266.1_249570_250191_+	COG2059, ChrA, Chromate transport protein ChrA [Inorganic ion transport and metabolism]	NA|226aa|down_1|NZ_CP030266.1_250190_250868_+	pfam02417, Chromate_transp, Chromate transporter	NA|127aa|down_2|NZ_CP030266.1_251135_251516_+	pfam07751, Abi_2, Abi-like protein	NA|122aa|down_3|NZ_CP030266.1_254365_254731_-	NA	NA|65aa|down_4|NZ_CP030266.1_254914_255109_-	NA	NA|146aa|down_5|NZ_CP030266.1_255305_255743_-	NA	NA|104aa|down_6|NZ_CP030266.1_256040_256352_-	NA	NA|127aa|down_7|NZ_CP030266.1_257032_257413_+	NA	NA|383aa|down_8|NZ_CP030266.1_257375_258524_-	NA	NA|289aa|down_9|NZ_CP030266.1_259065_259932_-	NA
GCF_006969105.1_ASM696910v1	NZ_CP030266	Mycoplasma capricolum subsp. capripneumoniae strain JF6037 chromosome, complete genome	2	358443-358629	1	PILER-CR	no		DEDDh	Orphan	ACCAACCCATTGGTAACTGAGATACTTCAAATGTAACTGATATGCGTTGTAT	52	1	1	358495-358517	NZ_CP030266.1_436802-436824	NA	2	2	Orphan	DEDDh	NA|46aa|up_8|NZ_CP030266.1_352234_352372_+,NA|216aa|up_7|NZ_CP030266.1_352389_353037_+,NA|202aa|up_5|NZ_CP030266.1_353524_354130_+,NA|86aa|up_4|NZ_CP030266.1_354557_354815_+,NA|71aa|up_2|NZ_CP030266.1_355876_356089_+,NA|64aa|up_1|NZ_CP030266.1_357619_357811_+,NA|94aa|up_0|NZ_CP030266.1_357900_358182_+,NA|62aa|down_0|NZ_CP030266.1_359907_360093_+,NA|204aa|down_1|NZ_CP030266.1_361159_361771_+,NA|138aa|down_2|NZ_CP030266.1_361821_362235_+,NA|126aa|down_8|NZ_CP030266.1_366918_367296_+,NA|182aa|down_9|NZ_CP030266.1_367374_367920_+	NA|151aa|up_9|NZ_CP030266.1_351733_352186_+	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|46aa|up_8|NZ_CP030266.1_352234_352372_+	NA	NA|216aa|up_7|NZ_CP030266.1_352389_353037_+	NA	NA|128aa|up_6|NZ_CP030266.1_353062_353446_+	pfam01719, Rep_2, Plasmid replication protein	NA|202aa|up_5|NZ_CP030266.1_353524_354130_+	NA	NA|86aa|up_4|NZ_CP030266.1_354557_354815_+	NA	NA|246aa|up_3|NZ_CP030266.1_355139_355877_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|71aa|up_2|NZ_CP030266.1_355876_356089_+	NA	NA|64aa|up_1|NZ_CP030266.1_357619_357811_+	NA	NA|94aa|up_0|NZ_CP030266.1_357900_358182_+	NA	NA|62aa|down_0|NZ_CP030266.1_359907_360093_+	NA	NA|204aa|down_1|NZ_CP030266.1_361159_361771_+	NA	NA|138aa|down_2|NZ_CP030266.1_361821_362235_+	NA	NA|183aa|down_3|NZ_CP030266.1_362802_363351_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|272aa|down_4|NZ_CP030266.1_363404_364220_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|268aa|down_5|NZ_CP030266.1_364274_365078_+	TIGR00635, Holliday_junction_ATP-dependent_DNA_helicase_RuvB, Holliday junction DNA helicase, RuvB subunit	NA|223aa|down_6|NZ_CP030266.1_365078_365747_+	pfam02086, MethyltransfD12, D12 class N6 adenine-specific DNA methyltransferase	NA|157aa|down_7|NZ_CP030266.1_366236_366707_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|126aa|down_8|NZ_CP030266.1_366918_367296_+	NA	NA|182aa|down_9|NZ_CP030266.1_367374_367920_+	NA
GCF_006969105.1_ASM696910v1	NZ_CP030266	Mycoplasma capricolum subsp. capripneumoniae strain JF6037 chromosome, complete genome	3	747607-747747	2	CRISPRCasFinder	no		DEDDh	Orphan	GGTTGTGGTAGATTAGTGGTAGAAATATGGTAGATTAGAATATAAA	46	0	0	NA	NA	NA	1	1	Orphan	DEDDh	NA|478aa|up_5|NZ_CP030266.1_737627_739061_-,NA|190aa|up_2|NZ_CP030266.1_741584_742154_-,NA|155aa|up_1|NZ_CP030266.1_742372_742837_-,NA|318aa|down_2|NZ_CP030266.1_753506_754460_+,NA|62aa|down_4|NZ_CP030266.1_761701_761887_-	NA|431aa|up_9|NZ_CP030266.1_729162_730455_-	cd17933, DEXSc_RecD-like, DEXS-box helicase domain of RecD and similar proteins	NA|282aa|up_8|NZ_CP030266.1_732913_733759_-	cd00947, TBP_aldolase_IIB, Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases	NA|245aa|up_7|NZ_CP030266.1_733962_734697_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|314aa|up_6|NZ_CP030266.1_736605_737547_+	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|478aa|up_5|NZ_CP030266.1_737627_739061_-	NA	NA|316aa|up_4|NZ_CP030266.1_740127_741075_-	COG0507, RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]	NA|178aa|up_3|NZ_CP030266.1_741040_741574_-	cd17934, DEXXQc_Upf1-like, DEXXQ-box helicase domain of Upf1-like helicase	NA|190aa|up_2|NZ_CP030266.1_741584_742154_-	NA	NA|155aa|up_1|NZ_CP030266.1_742372_742837_-	NA	NA|471aa|up_0|NZ_CP030266.1_746130_747543_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|485aa|down_0|NZ_CP030266.1_749804_751259_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|614aa|down_1|NZ_CP030266.1_751593_753435_+	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|318aa|down_2|NZ_CP030266.1_753506_754460_+	NA	NA|222aa|down_3|NZ_CP030266.1_760531_761197_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|62aa|down_4|NZ_CP030266.1_761701_761887_-	NA	NA|142aa|down_5|NZ_CP030266.1_761841_762267_+	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|405aa|down_6|NZ_CP030266.1_762344_763559_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|339aa|down_7|NZ_CP030266.1_763687_764704_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|312aa|down_8|NZ_CP030266.1_764796_765732_-	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|395aa|down_9|NZ_CP030266.1_765741_766926_-	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]
GCF_006969105.1_ASM696910v1	NZ_CP030266	Mycoplasma capricolum subsp. capripneumoniae strain JF6037 chromosome, complete genome	4	896431-896605	3	CRISPRCasFinder	no		DEDDh	Orphan	AATCAAGATTTATCAAAATGAGAT	24	0	0	NA	NA	NA	2	2	Orphan	DEDDh	NA|95aa|up_8|NZ_CP030266.1_882153_882438_-,NA|179aa|up_7|NZ_CP030266.1_883768_884305_-,NA	NA|438aa|up_9|NZ_CP030266.1_880797_882111_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|95aa|up_8|NZ_CP030266.1_882153_882438_-	NA	NA|179aa|up_7|NZ_CP030266.1_883768_884305_-	NA	NA|468aa|up_6|NZ_CP030266.1_884972_886376_+	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|221aa|up_5|NZ_CP030266.1_886377_887040_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|245aa|up_4|NZ_CP030266.1_888155_888890_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|184aa|up_3|NZ_CP030266.1_891104_891656_-	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|436aa|up_2|NZ_CP030266.1_891678_892986_-	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1	NA|433aa|up_1|NZ_CP030266.1_892969_894268_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|267aa|up_0|NZ_CP030266.1_894552_895353_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|490aa|down_0|NZ_CP030266.1_897261_898731_-	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|320aa|down_1|NZ_CP030266.1_898733_899693_-	COG1466, HolA, DNA polymerase III, delta subunit [DNA replication, recombination, and repair]	NA|672aa|down_2|NZ_CP030266.1_899951_901967_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|947aa|down_3|NZ_CP030266.1_901975_904816_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|370aa|down_4|NZ_CP030266.1_904808_905918_+	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|225aa|down_5|NZ_CP030266.1_905945_906620_+	TIGR04518, conserved_hypothetical_protein, ECF transporter S component, folate family	NA|527aa|down_6|NZ_CP030266.1_907654_909235_+	COG0682, Lgt, Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane]	NA|311aa|down_7|NZ_CP030266.1_909218_910151_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|477aa|down_8|NZ_CP030266.1_910159_911590_+	pfam01790, LGT, Prolipoprotein diacylglyceryl transferase	NA|310aa|down_9|NZ_CP030266.1_911601_912531_+	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_006969105.1_ASM696910v1	NZ_CP030266	Mycoplasma capricolum subsp. capripneumoniae strain JF6037 chromosome, complete genome	5	896743-896991	4	CRISPRCasFinder	no		DEDDh	Orphan	AATCAAGATTTATCAAAATGAGAT	24	0	0	NA	NA	NA	3	3	Orphan	DEDDh	NA|95aa|up_8|NZ_CP030266.1_882153_882438_-,NA|179aa|up_7|NZ_CP030266.1_883768_884305_-,NA	NA|438aa|up_9|NZ_CP030266.1_880797_882111_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|95aa|up_8|NZ_CP030266.1_882153_882438_-	NA	NA|179aa|up_7|NZ_CP030266.1_883768_884305_-	NA	NA|468aa|up_6|NZ_CP030266.1_884972_886376_+	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|221aa|up_5|NZ_CP030266.1_886377_887040_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|245aa|up_4|NZ_CP030266.1_888155_888890_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|184aa|up_3|NZ_CP030266.1_891104_891656_-	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|436aa|up_2|NZ_CP030266.1_891678_892986_-	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1	NA|433aa|up_1|NZ_CP030266.1_892969_894268_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|267aa|up_0|NZ_CP030266.1_894552_895353_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|490aa|down_0|NZ_CP030266.1_897261_898731_-	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|320aa|down_1|NZ_CP030266.1_898733_899693_-	COG1466, HolA, DNA polymerase III, delta subunit [DNA replication, recombination, and repair]	NA|672aa|down_2|NZ_CP030266.1_899951_901967_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|947aa|down_3|NZ_CP030266.1_901975_904816_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|370aa|down_4|NZ_CP030266.1_904808_905918_+	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|225aa|down_5|NZ_CP030266.1_905945_906620_+	TIGR04518, conserved_hypothetical_protein, ECF transporter S component, folate family	NA|527aa|down_6|NZ_CP030266.1_907654_909235_+	COG0682, Lgt, Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane]	NA|311aa|down_7|NZ_CP030266.1_909218_910151_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|477aa|down_8|NZ_CP030266.1_910159_911590_+	pfam01790, LGT, Prolipoprotein diacylglyceryl transferase	NA|310aa|down_9|NZ_CP030266.1_911601_912531_+	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_006969105.1_ASM696910v1	NZ_CP030266	Mycoplasma capricolum subsp. capripneumoniae strain JF6037 chromosome, complete genome	6	980139-980240	5	CRISPRCasFinder	no		DEDDh	Orphan	AATCAAAATATAAATAATTCAAAT	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh	NA|100aa|up_0|NZ_CP030266.1_979515_979815_-,NA|61aa|down_0|NZ_CP030266.1_982024_982207_+,NA|327aa|down_7|NZ_CP030266.1_989867_990848_-	NA|243aa|up_9|NZ_CP030266.1_964852_965581_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|276aa|up_8|NZ_CP030266.1_972507_973335_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|103aa|up_7|NZ_CP030266.1_973346_973655_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|501aa|up_6|NZ_CP030266.1_973767_975270_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|325aa|up_5|NZ_CP030266.1_975272_976247_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|105aa|up_4|NZ_CP030266.1_976248_976563_-	pfam08921, DUF1904, Domain of unknown function (DUF1904)	NA|423aa|up_3|NZ_CP030266.1_976668_977937_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|276aa|up_2|NZ_CP030266.1_978017_978845_-	COG2364, COG2364, Predicted membrane protein [Function unknown]	NA|195aa|up_1|NZ_CP030266.1_978912_979497_-	TIGR04522, EcfS_MSC_0063, putative energy coupling factor transporter S component, MSC_0063 family	NA|100aa|up_0|NZ_CP030266.1_979515_979815_-	NA	NA|61aa|down_0|NZ_CP030266.1_982024_982207_+	NA	NA|581aa|down_1|NZ_CP030266.1_982250_983993_-	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component	NA|150aa|down_2|NZ_CP030266.1_984100_984550_+	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of  thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides	NA|697aa|down_3|NZ_CP030266.1_984698_986789_+	pfam01732, DUF31, Putative peptidase (DUF31)	NA|302aa|down_4|NZ_CP030266.1_987525_988431_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|150aa|down_5|NZ_CP030266.1_988484_988934_+	pfam13518, HTH_28, Helix-turn-helix domain	NA|218aa|down_6|NZ_CP030266.1_988981_989635_-	cd09006, PNP_EcPNPI-like, purine nucleoside phosphorylases similar to Escherichia coli PNP-I (DeoD) and Trichomonas vaginalis PNP	NA|327aa|down_7|NZ_CP030266.1_989867_990848_-	NA	NA|312aa|down_8|NZ_CP030266.1_991701_992637_+	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|630aa|down_9|NZ_CP030266.1_996994_998884_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG
