assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006874785.1_ASM687478v1	NZ_CP015853	Escherichia coli strain ATCC 43889 chromosome, complete genome	1	222471-222620	1	CRISPRCasFinder	no	DEDDh	DEDDh,DinG,cas3,PrimPol,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Unclear	TACCAGAGATAGCGAACCGTAGGTCGGAAAAGGCGCTCGCGCCGCATCCGACA	53	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,PrimPol,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|22aa|up_2|NZ_CP015853.1_220558_220624_+,NA	NA|273aa|up_9|NZ_CP015853.1_214525_215344_-	PRK10302, PRK10302, hypothetical protein; Provisional	NA|189aa|up_8|NZ_CP015853.1_215340_215907_-	PRK11440, PRK11440, putative hydrolase; Provisional	NA|591aa|up_7|NZ_CP015853.1_216216_217989_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|151aa|up_6|NZ_CP015853.1_218106_218559_+	PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional	NA|247aa|up_5|NZ_CP015853.1_218587_219328_+	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator	NA|174aa|up_4|NZ_CP015853.1_219362_219884_+	TIGR00228, Crossover_junction_endodeoxyribonuclease_RuvC, crossover junction endodeoxyribonuclease RuvC	NA|201aa|up_3|NZ_CP015853.1_219885_220488_-	PRK11470, PRK11470, YebB family permuted papain-like enzyme	NA|22aa|up_2|NZ_CP015853.1_220558_220624_+	NA	NA|204aa|up_1|NZ_CP015853.1_220762_221374_+	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|337aa|up_0|NZ_CP015853.1_221382_222393_+	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|262aa|down_0|NZ_CP015853.1_222638_223424_-	PRK09543, znuB, zinc ABC transporter permease subunit ZnuB	NA|252aa|down_1|NZ_CP015853.1_223420_224176_-	PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed	NA|311aa|down_2|NZ_CP015853.1_224254_225187_+	PRK09545, znuA, zinc ABC transporter substrate-binding protein ZnuA	NA|441aa|down_3|NZ_CP015853.1_225202_226525_+	PRK11649, PRK11649, putative peptidase; Provisional	NA|324aa|down_4|NZ_CP015853.1_226644_227616_+	PRK08943, PRK08943, lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated	NA|481aa|down_5|NZ_CP015853.1_227746_229189_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|290aa|down_6|NZ_CP015853.1_229316_230186_-	PRK11302, PRK11302, DNA-binding transcriptional regulator HexR; Provisional	NA|492aa|down_7|NZ_CP015853.1_230523_231999_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|604aa|down_8|NZ_CP015853.1_232233_234045_+	PRK09054, PRK09054, phosphogluconate dehydratase; Validated	NA|214aa|down_9|NZ_CP015853.1_234081_234723_+	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
GCF_006874785.1_ASM687478v1	NZ_CP015853	Escherichia coli strain ATCC 43889 chromosome, complete genome	2	422381-422504	2	CRISPRCasFinder	no	DEDDh	DEDDh,DinG,cas3,PrimPol,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,PrimPol,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|30aa|down_7|NZ_CP015853.1_431400_431490_+	NA|471aa|up_9|NZ_CP015853.1_411834_413247_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP015853.1_413803_414013_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP015853.1_414468_415095_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP015853.1_415115_417218_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP015853.1_417221_417869_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP015853.1_417932_418601_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP015853.1_418597_419383_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP015853.1_419386_420199_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP015853.1_420210_421815_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP015853.1_421940_422246_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP015853.1_422818_424075_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP015853.1_424115_425489_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP015853.1_425703_426345_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP015853.1_426384_427533_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP015853.1_427823_429035_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP015853.1_429147_430080_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP015853.1_430076_431102_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP015853.1_431400_431490_+	NA	NA|390aa|down_8|NZ_CP015853.1_431655_432825_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP015853.1_432970_433552_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_006874785.1_ASM687478v1	NZ_CP015853	Escherichia coli strain ATCC 43889 chromosome, complete genome	3	2627274-2627408	3	CRISPRCasFinder	no		DEDDh,DinG,cas3,PrimPol,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GGCCTACACGCTGCAATTTTGTAGGCCGGATAAGCAACGCGCATCCGGCA	50	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,PrimPol,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|190aa|up_7|NZ_CP015853.1_2617662_2618232_-,NA	NA|44aa|up_9|NZ_CP015853.1_2615555_2615687_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|553aa|up_8|NZ_CP015853.1_2615775_2617434_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|190aa|up_7|NZ_CP015853.1_2617662_2618232_-	NA	NA|328aa|up_6|NZ_CP015853.1_2618603_2619587_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|NZ_CP015853.1_2619562_2621173_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|NZ_CP015853.1_2621156_2621855_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|NZ_CP015853.1_2621941_2622706_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|NZ_CP015853.1_2622791_2623670_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|NZ_CP015853.1_2624008_2625709_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|NZ_CP015853.1_2625719_2627222_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|NZ_CP015853.1_2627421_2628117_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|NZ_CP015853.1_2628191_2630543_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|NZ_CP015853.1_2630706_2633613_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|NZ_CP015853.1_2633624_2634284_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|256aa|down_4|NZ_CP015853.1_2634701_2635469_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|272aa|down_5|NZ_CP015853.1_2635763_2636579_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_6|NZ_CP015853.1_2636833_2639188_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_7|NZ_CP015853.1_2639240_2640527_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_8|NZ_CP015853.1_2640526_2641516_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_9|NZ_CP015853.1_2641512_2642334_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA
GCF_006874785.1_ASM687478v1	NZ_CP015853	Escherichia coli strain ATCC 43889 chromosome, complete genome	4	2652190-2652326	1	PILER-CR	no		DEDDh,DinG,cas3,PrimPol,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TGAATCACCAATATTGAAAAT	21	0	0	NA	NA	NA	2	2	Orphan	DEDDh,DinG,cas3,PrimPol,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|105aa|up_9|NZ_CP015853.1_2643565_2643880_-	pfam01845, CcdB, CcdB protein	NA|78aa|up_8|NZ_CP015853.1_2643882_2644116_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP015853.1_2644201_2644681_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP015853.1_2644872_2646735_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP015853.1_2646727_2647258_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP015853.1_2647365_2648697_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP015853.1_2648754_2649042_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP015853.1_2649038_2650325_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP015853.1_2650375_2651317_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP015853.1_2651331_2652102_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP015853.1_2652575_2654090_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP015853.1_2654120_2655263_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP015853.1_2655391_2656609_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP015853.1_2656682_2658236_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP015853.1_2658344_2659130_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP015853.1_2659135_2659726_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP015853.1_2659844_2660240_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP015853.1_2660500_2663722_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP015853.1_2663739_2664888_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP015853.1_2665343_2666165_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_006874785.1_ASM687478v1	NZ_CP015853	Escherichia coli strain ATCC 43889 chromosome, complete genome	5	2857337-2857486	4	CRISPRCasFinder	no		DEDDh,DinG,cas3,PrimPol,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,PrimPol,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|579aa|down_6|NZ_CP015853.1_2864583_2866320_-	NA|156aa|up_9|NZ_CP015853.1_2844310_2844778_+	COG4333, COG4333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|up_8|NZ_CP015853.1_2845780_2846113_+	pfam07978, NIPSNAP, NIPSNAP	NA|126aa|up_7|NZ_CP015853.1_2846234_2846612_+	pfam13711, DUF4160, Domain of unknown function (DUF4160)	NA|405aa|up_6|NZ_CP015853.1_2846794_2848008_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|650aa|up_5|NZ_CP015853.1_2848207_2850157_-	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|340aa|up_4|NZ_CP015853.1_2850527_2851547_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|501aa|up_3|NZ_CP015853.1_2851676_2853179_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP015853.1_2853339_2854422_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP015853.1_2854421_2855522_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP015853.1_2855788_2857300_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP015853.1_2857653_2858097_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP015853.1_2858096_2860952_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP015853.1_2861006_2862203_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP015853.1_2862395_2862899_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP015853.1_2862944_2863361_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP015853.1_2863522_2864527_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|579aa|down_6|NZ_CP015853.1_2864583_2866320_-	NA	NA|151aa|down_7|NZ_CP015853.1_2866442_2866895_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|NZ_CP015853.1_2867039_2867633_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|238aa|down_9|NZ_CP015853.1_2867703_2868417_+	PRK12742, PRK12742, SDR family oxidoreductase
GCF_006874785.1_ASM687478v1	NZ_CP015853	Escherichia coli strain ATCC 43889 chromosome, complete genome	6	4559503-4559591	5	CRISPRCasFinder	no	cas3	DEDDh,DinG,cas3,PrimPol,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACC	28	0	0	NA	NA	I-E	1	1	Unclear	DEDDh,DinG,cas3,PrimPol,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|745aa|up_9|NZ_CP015853.1_4547668_4549903_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_8|NZ_CP015853.1_4549980_4550229_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_7|NZ_CP015853.1_4550228_4550564_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_6|NZ_CP015853.1_4550634_4551426_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_5|NZ_CP015853.1_4551653_4553291_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_4|NZ_CP015853.1_4553378_4554677_+	PRK00077, eno, enolase; Provisional	NA|383aa|up_3|NZ_CP015853.1_4555646_4556795_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|225aa|up_2|NZ_CP015853.1_4557028_4557703_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|207aa|up_1|NZ_CP015853.1_4557716_4558337_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|NZ_CP015853.1_4558491_4559163_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP015853.1_4560225_4561704_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP015853.1_4561730_4563008_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP015853.1_4563325_4564111_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP015853.1_4564180_4565635_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|260aa|down_4|NZ_CP015853.1_4567042_4567822_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|192aa|down_5|NZ_CP015853.1_4568826_4569402_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_6|NZ_CP015853.1_4569418_4569679_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_7|NZ_CP015853.1_4569669_4570941_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|down_8|NZ_CP015853.1_4571018_4571384_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_9|NZ_CP015853.1_4571699_4573499_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit
GCF_006874785.1_ASM687478v1	NZ_CP015853	Escherichia coli strain ATCC 43889 chromosome, complete genome	7	4585281-4585493	2,1,6	PILER-CR,CRT,CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,DinG,cas3,PrimPol,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	TGTGTTCCCCGCGCCAGCGGGGATAAACCG,TGTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	30,30,29	0	0	NA	NA	I-E:I-E:I-E	2,3,3	3	TypeI-E	DEDDh,DinG,cas3,PrimPol,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|245aa|up_9|NZ_CP015853.1_4575284_4576019_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP015853.1_4576282_4576435_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP015853.1_4576626_4579326_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP015853.1_4579423_4580986_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP015853.1_4580982_4581519_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_CP015853.1_4581530_4582586_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP015853.1_4582596_4583343_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP015853.1_4583324_4583975_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP015853.1_4583971_4584895_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP015853.1_4584891_4585185_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP015853.1_4585574_4586612_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP015853.1_4586863_4587772_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP015853.1_4587773_4589201_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP015853.1_4589200_4589806_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP015853.1_4589855_4590179_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP015853.1_4590372_4590684_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP015853.1_4590702_4591413_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP015853.1_4591412_4591892_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP015853.1_4591888_4592938_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP015853.1_4592918_4593680_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_006874785.1_ASM687478v1	NZ_CP015853	Escherichia coli strain ATCC 43889 chromosome, complete genome	8	5177315-5177420	7	CRISPRCasFinder	no		DEDDh,DinG,cas3,PrimPol,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CCGAGCCGTAGGCCGGATTAGGCGTT	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,PrimPol,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|357aa|up_5|NZ_CP015853.1_5171294_5172365_-,NA	NA|420aa|up_9|NZ_CP015853.1_5165481_5166741_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_8|NZ_CP015853.1_5166730_5168359_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_7|NZ_CP015853.1_5168631_5169990_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_6|NZ_CP015853.1_5169994_5171071_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|357aa|up_5|NZ_CP015853.1_5171294_5172365_-	NA	NA|293aa|up_4|NZ_CP015853.1_5172828_5173707_-	cd05466, PBP2_LTTR_substrate, The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily	NA|397aa|up_3|NZ_CP015853.1_5173858_5175049_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|217aa|up_2|NZ_CP015853.1_5175129_5175780_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP015853.1_5175833_5176088_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP015853.1_5176087_5177218_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP015853.1_5177444_5179730_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP015853.1_5180425_5184178_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP015853.1_5184318_5185041_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP015853.1_5185187_5187815_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|543aa|down_4|NZ_CP015853.1_5188022_5189651_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP015853.1_5189647_5190271_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP015853.1_5190414_5194809_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|259aa|down_7|NZ_CP015853.1_5196463_5197240_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|950aa|down_8|NZ_CP015853.1_5197514_5200364_+	PRK10841, PRK10841, two-component system sensor histidine kinase RcsC	NA|217aa|down_9|NZ_CP015853.1_5200563_5201214_-	PRK10840, PRK10840, transcriptional regulator RcsB; Provisional
GCF_006874785.1_ASM687478v1	NZ_CP015853	Escherichia coli strain ATCC 43889 chromosome, complete genome	9	5317911-5318023	3	PILER-CR	no		DEDDh,DinG,cas3,PrimPol,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TTTACCCGAATCAGGTAAA	19	2	2	5317930-5317958|5317978-5318005	NZ_CP015853.1_1143503-1143475|NZ_CP015853.1_1143455-1143428	NA	2	2	Orphan	DEDDh,DinG,cas3,PrimPol,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|354aa|up_3|NZ_CP015853.1_5314697_5315759_-,NA|101aa|down_1|NZ_CP015853.1_5319183_5319486_+,NA|36aa|down_3|NZ_CP015853.1_5319977_5320085_+,NA|34aa|down_7|NZ_CP015853.1_5323608_5323710_+	NA|61aa|up_9|NZ_CP015853.1_5311636_5311819_-	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|226aa|up_8|NZ_CP015853.1_5311818_5312496_-	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|262aa|up_7|NZ_CP015853.1_5312492_5313278_-	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|99aa|up_6|NZ_CP015853.1_5313283_5313580_-	pfam06064, Gam, Host-nuclease inhibitor protein Gam	NA|69aa|up_5|NZ_CP015853.1_5313655_5313862_-	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|126aa|up_4|NZ_CP015853.1_5314342_5314720_-	COG4933, COG4933, Uncharacterized conserved protein [Function unknown]	NA|354aa|up_3|NZ_CP015853.1_5314697_5315759_-	NA	NA|230aa|up_2|NZ_CP015853.1_5315839_5316529_-	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|77aa|up_1|NZ_CP015853.1_5316633_5316864_+	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|180aa|up_0|NZ_CP015853.1_5316933_5317473_+	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|234aa|down_0|NZ_CP015853.1_5318485_5319187_+	pfam06992, Phage_lambda_P, Replication protein P	NA|101aa|down_1|NZ_CP015853.1_5319183_5319486_+	NA	NA|111aa|down_2|NZ_CP015853.1_5319553_5319886_+	PRK09541, emrE, EmrE family multidrug efflux SMR transporter	NA|36aa|down_3|NZ_CP015853.1_5319977_5320085_+	NA	NA|509aa|down_4|NZ_CP015853.1_5320142_5321669_+	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|184aa|down_5|NZ_CP015853.1_5322133_5322685_+	PRK09818, PRK09818, kinase inhibitor	NA|266aa|down_6|NZ_CP015853.1_5322694_5323492_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|34aa|down_7|NZ_CP015853.1_5323608_5323710_+	NA	NA|152aa|down_8|NZ_CP015853.1_5323706_5324162_+	PRK09741, PRK09741, hypothetical protein; Provisional	NA|57aa|down_9|NZ_CP015853.1_5324161_5324332_+	PRK09689, PRK09689, prophage protein NinE; Provisional
