assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006874725.1_ASM687472v1	NZ_CP035466	Klebsiella aerogenes strain LU2 chromosome, complete genome	1	390995-391109	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,WYL,DinG	Orphan	GTTGGGTAGCCCGGATAAGGCGTAACCGC	29	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,WYL,DinG	NA|120aa|up_3|NZ_CP035466.1_387445_387805_+,NA	NA|89aa|up_9|NZ_CP035466.1_382125_382392_-	PRK10878, PRK10878, FAD assembly factor SdhE	NA|328aa|up_8|NZ_CP035466.1_382615_383599_+	PRK09559, PRK09559, putative global regulator; Reviewed	NA|220aa|up_7|NZ_CP035466.1_383853_384513_-	PRK15087, PRK15087, hemolysin; Provisional	NA|104aa|up_6|NZ_CP035466.1_384677_384989_-	PRK04980, PRK04980, hypothetical protein; Provisional	NA|245aa|up_5|NZ_CP035466.1_385039_385774_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|478aa|up_4|NZ_CP035466.1_385887_387321_+	PRK15014, PRK15014, 6-phospho-beta-glucosidase BglA; Provisional	NA|120aa|up_3|NZ_CP035466.1_387445_387805_+	NA	NA|670aa|up_2|NZ_CP035466.1_387854_389864_+	COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]	NA|204aa|up_1|NZ_CP035466.1_389865_390477_+	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti	NA|168aa|up_0|NZ_CP035466.1_390466_390970_+	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif	NA|248aa|down_0|NZ_CP035466.1_391165_391909_-	PRK09730, PRK09730, SDR family oxidoreductase	NA|958aa|down_1|NZ_CP035466.1_391969_394843_-	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|130aa|down_2|NZ_CP035466.1_394973_395363_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|365aa|down_3|NZ_CP035466.1_395387_396482_-	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT	NA|401aa|down_4|NZ_CP035466.1_396904_398107_-	PRK08013, PRK08013, oxidoreductase; Provisional	NA|393aa|down_5|NZ_CP035466.1_398117_399296_-	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated	NA|439aa|down_6|NZ_CP035466.1_399292_400609_-	PRK10879, PRK10879, proline aminopeptidase P II; Provisional	NA|193aa|down_7|NZ_CP035466.1_400634_401213_-	PRK01736, PRK01736, hypothetical protein; Reviewed	NA|110aa|down_8|NZ_CP035466.1_401379_401709_+	PRK10972, PRK10972, cell division protein ZapA	NA|199aa|down_9|NZ_CP035466.1_402033_402630_+	PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
GCF_006874725.1_ASM687472v1	NZ_CP035466	Klebsiella aerogenes strain LU2 chromosome, complete genome	2	1731208-1731322	2	CRISPRCasFinder	no		csa3,cas3,DEDDh,WYL,DinG	Orphan	CCCGGATAGCGGCAGGCGCCTTATCCGGG	29	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,WYL,DinG	NA,NA	NA|150aa|up_9|NZ_CP035466.1_1722332_1722782_+	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|312aa|up_8|NZ_CP035466.1_1722927_1723863_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|224aa|up_7|NZ_CP035466.1_1723895_1724567_-	COG3061, OapA, Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane]	NA|207aa|up_6|NZ_CP035466.1_1724776_1725397_+	PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional	NA|468aa|up_5|NZ_CP035466.1_1725704_1727108_+	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional	NA|222aa|up_4|NZ_CP035466.1_1727172_1727838_-	PRK10992, PRK10992, iron-sulfur cluster repair protein YtfE	NA|329aa|up_3|NZ_CP035466.1_1727920_1728907_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|275aa|up_2|NZ_CP035466.1_1728971_1729796_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|283aa|up_1|NZ_CP035466.1_1729876_1730725_-	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs	NA|124aa|up_0|NZ_CP035466.1_1730814_1731186_+	pfam01638, HxlR, HxlR-like helix-turn-helix	NA|648aa|down_0|NZ_CP035466.1_1731380_1733324_-	PRK09420, cpdB, bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase	NA|248aa|down_1|NZ_CP035466.1_1733515_1734259_+	PRK10931, PRK10931, adenosine-3'(2'),5'-bisphosphate nucleotidase; Provisional	NA|186aa|down_2|NZ_CP035466.1_1734248_1734806_-	COG3054, COG3054, Predicted transcriptional regulator [General function prediction only]	NA|69aa|down_3|NZ_CP035466.1_1735125_1735332_+	pfam06526, DUF1107, Protein of unknown function (DUF1107)	NA|451aa|down_4|NZ_CP035466.1_1735395_1736748_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|213aa|down_5|NZ_CP035466.1_1736929_1737568_-	PRK00058, PRK00058, peptide-methionine (S)-S-oxide reductase MsrA	NA|578aa|down_6|NZ_CP035466.1_1737770_1739504_+	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|1259aa|down_7|NZ_CP035466.1_1739500_1743277_+	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown]	NA|114aa|down_8|NZ_CP035466.1_1743279_1743621_+	COG2105, COG2105, Uncharacterized conserved protein [Function unknown]	NA|177aa|down_9|NZ_CP035466.1_1743736_1744267_-	PRK01250, PRK01250, inorganic diphosphatase
GCF_006874725.1_ASM687472v1	NZ_CP035466	Klebsiella aerogenes strain LU2 chromosome, complete genome	3	1946895-1947021	3	CRISPRCasFinder	no		csa3,cas3,DEDDh,WYL,DinG	Orphan	GCGGGTTGTGTAGCCGGGGTAAGGCGCGAAGCGCCGCCAC	40	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,WYL,DinG	NA,NA|60aa|down_1|NZ_CP035466.1_1948297_1948477_-	NA|147aa|up_9|NZ_CP035466.1_1936355_1936796_+	TIGR02337, Homoprotocatechuate_degradative_operon_repressor	NA|421aa|up_8|NZ_CP035466.1_1936799_1938062_-	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]	NA|88aa|up_7|NZ_CP035466.1_1938042_1938306_-	pfam13510, Fer2_4, 2Fe-2S iron-sulfur cluster binding domain	NA|370aa|up_6|NZ_CP035466.1_1938302_1939412_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|316aa|up_5|NZ_CP035466.1_1939408_1940356_-	PRK13970, PRK13970, 4-hydroxyproline epimerase	NA|275aa|up_4|NZ_CP035466.1_1940666_1941491_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|307aa|up_3|NZ_CP035466.1_1941642_1942563_+	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|535aa|up_2|NZ_CP035466.1_1942577_1944182_+	cd07129, ALDH_KGSADH, Alpha-Ketoglutaric Semialdehyde Dehydrogenase	NA|534aa|up_1|NZ_CP035466.1_1944197_1945799_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|339aa|up_0|NZ_CP035466.1_1945810_1946827_+	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase	NA|407aa|down_0|NZ_CP035466.1_1947033_1948254_-	cd06818, PLPDE_III_cryptic_DSD, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase	NA|60aa|down_1|NZ_CP035466.1_1948297_1948477_-	NA	NA|480aa|down_2|NZ_CP035466.1_1948454_1949894_+	cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics	NA|131aa|down_3|NZ_CP035466.1_1949904_1950297_+	cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|496aa|down_4|NZ_CP035466.1_1950484_1951972_+	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain	NA|291aa|down_5|NZ_CP035466.1_1951981_1952854_+	pfam05035, DGOK, 2-keto-3-deoxy-galactonokinase	NA|200aa|down_6|NZ_CP035466.1_1952840_1953440_+	PRK09140, PRK09140, 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed	NA|288aa|down_7|NZ_CP035466.1_1953436_1954300_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|178aa|down_8|NZ_CP035466.1_1954381_1954915_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|272aa|down_9|NZ_CP035466.1_1954947_1955763_+	PRK09491, rimI, ribosomal-protein-alanine N-acetyltransferase; Provisional
GCF_006874725.1_ASM687472v1	NZ_CP035466	Klebsiella aerogenes strain LU2 chromosome, complete genome	4	2051303-2051420	4	CRISPRCasFinder	no		csa3,cas3,DEDDh,WYL,DinG	Orphan	GCCCGGATAAGGCGCAAGCCGCCATCCGGGAA	32	1	1	2051335-2051388	NZ_CP035466.1_741899-741952	NA	1	1	Orphan	csa3,cas3,DEDDh,WYL,DinG	NA|41aa|up_8|NZ_CP035466.1_2040633_2040756_-,NA	NA|313aa|up_9|NZ_CP035466.1_2039698_2040637_-	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|41aa|up_8|NZ_CP035466.1_2040633_2040756_-	NA	NA|352aa|up_7|NZ_CP035466.1_2040903_2041959_+	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|478aa|up_6|NZ_CP035466.1_2042003_2043437_+	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|421aa|up_5|NZ_CP035466.1_2043516_2044779_+	cd01115, SLC13_permease, Permease SLC13 (solute carrier 13)	NA|762aa|up_4|NZ_CP035466.1_2044834_2047120_+	PRK11413, PRK11413, putative hydratase; Provisional	NA|311aa|up_3|NZ_CP035466.1_2047189_2048122_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|210aa|up_2|NZ_CP035466.1_2048214_2048844_+	PLN02961, PLN02961, alanine-tRNA ligase	NA|235aa|up_1|NZ_CP035466.1_2048849_2049554_-	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]	NA|543aa|up_0|NZ_CP035466.1_2049546_2051175_-	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	NA|434aa|down_0|NZ_CP035466.1_2051430_2052732_-	PRK15476, PRK15476, oxaloacetate decarboxylase subunit beta; Provisional	NA|587aa|down_1|NZ_CP035466.1_2052747_2054508_-	PRK14040, PRK14040, oxaloacetate decarboxylase subunit alpha	NA|83aa|down_2|NZ_CP035466.1_2054523_2054772_-	PRK02919, PRK02919, oxaloacetate decarboxylase subunit gamma; Provisional	NA|447aa|down_3|NZ_CP035466.1_2054929_2056270_-	COG3493, CitS, Na+/citrate symporter [Energy production and conversion]	NA|343aa|down_4|NZ_CP035466.1_2056525_2057554_+	TIGR00124, -lyase]_ligase, [citrate (pro-3S)-lyase] ligase	NA|98aa|down_5|NZ_CP035466.1_2057584_2057878_+	PRK13253, PRK13253, citrate lyase subunit gamma; Provisional	NA|290aa|down_6|NZ_CP035466.1_2057874_2058744_+	TIGR01588, Citrate_lyase_subunit_beta, citrate lyase, beta subunit	NA|509aa|down_7|NZ_CP035466.1_2058754_2060281_+	COG3051, CitF, Citrate lyase, alpha subunit [Energy production and conversion]	NA|303aa|down_8|NZ_CP035466.1_2060300_2061209_+	TIGR03125, citrate_citG, triphosphoribosyl-dephospho-CoA synthase CitG	NA|274aa|down_9|NZ_CP035466.1_2061436_2062258_+	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_006874725.1_ASM687472v1	NZ_CP035466	Klebsiella aerogenes strain LU2 chromosome, complete genome	5	2873625-2873698	5	CRISPRCasFinder	no		csa3,cas3,DEDDh,WYL,DinG	Orphan	CGGGTGGCGGCTACGCCTTACCCG	24	1	2	2873649-2873674|2873649-2873674	NZ_CP035466.1_629554-629579|NZ_CP035466.1_2074431-2074406	NA	1	1	Orphan	csa3,cas3,DEDDh,WYL,DinG	NA,NA|63aa|down_9|NZ_CP035466.1_2886700_2886889_+	NA|526aa|up_9|NZ_CP035466.1_2862657_2864235_-	COG2194, COG2194, Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]	NA|42aa|up_8|NZ_CP035466.1_2864503_2864629_-	NF033226, small_MntS, manganase accumulation protein MntS	NA|156aa|up_7|NZ_CP035466.1_2864815_2865283_+	PRK11050, PRK11050, manganese-binding transcriptional regulator MntR	NA|371aa|up_6|NZ_CP035466.1_2865279_2866392_+	cd01117, YbiR_permease, Putative anion permease YbiR	NA|347aa|up_5|NZ_CP035466.1_2866499_2867540_+	cd19091, AKR_PsAKR, Polaromonas Sp	NA|459aa|up_4|NZ_CP035466.1_2867696_2869073_+	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]	NA|239aa|up_3|NZ_CP035466.1_2869133_2869850_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|305aa|up_2|NZ_CP035466.1_2869941_2870856_-	PRK10260, PRK10260, L,D-transpeptidase; Provisional	NA|261aa|up_1|NZ_CP035466.1_2871054_2871837_-	pfam13350, Y_phosphatase3, Tyrosine phosphatase family	NA|531aa|up_0|NZ_CP035466.1_2872016_2873609_+	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional	NA|788aa|down_0|NZ_CP035466.1_2873802_2876166_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|434aa|down_1|NZ_CP035466.1_2876181_2877483_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|358aa|down_2|NZ_CP035466.1_2877779_2878853_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|422aa|down_3|NZ_CP035466.1_2878849_2880115_-	pfam07350, DUF1479, Protein of unknown function (DUF1479)	NA|272aa|down_4|NZ_CP035466.1_2880254_2881070_-	TIGR00099, Uncharacterized_protein_MCAP_0867, Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily	NA|811aa|down_5|NZ_CP035466.1_2881220_2883653_-	TIGR01774, Putative_formate_acetyltransferase_3, glycyl radical enzyme, PFL2/glycerol dehydratase family	NA|300aa|down_6|NZ_CP035466.1_2883656_2884556_-	TIGR02494, PFLE_PFLC, glycyl-radical enzyme activating protein	NA|252aa|down_7|NZ_CP035466.1_2884711_2885467_-	PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional	NA|412aa|down_8|NZ_CP035466.1_2885466_2886702_-	PRK10680, PRK10680, molybdopterin biosynthesis protein MoeA; Provisional	NA|63aa|down_9|NZ_CP035466.1_2886700_2886889_+	NA
GCF_006874725.1_ASM687472v1	NZ_CP035466	Klebsiella aerogenes strain LU2 chromosome, complete genome	6	3356538-3356630	6	CRISPRCasFinder	no		csa3,cas3,DEDDh,WYL,DinG	Orphan	TGTAGCCTCGCTAAGCGAAGCGCG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,WYL,DinG	NA,NA	NA|459aa|up_9|NZ_CP035466.1_3342481_3343858_+	PRK10177, PRK10177, YchO/YchP family invasin	NA|217aa|up_8|NZ_CP035466.1_3343854_3344505_-	PRK10651, PRK10651, transcriptional regulator NarL; Provisional	NA|593aa|up_7|NZ_CP035466.1_3344515_3346294_-	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX	NA|463aa|up_6|NZ_CP035466.1_3346605_3347994_+	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional	NA|1248aa|up_5|NZ_CP035466.1_3348380_3352124_+	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion]	NA|512aa|up_4|NZ_CP035466.1_3352120_3353656_+	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|237aa|up_3|NZ_CP035466.1_3353652_3354363_+	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone	NA|226aa|up_2|NZ_CP035466.1_3354362_3355040_+	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain	NA|299aa|up_1|NZ_CP035466.1_3355036_3355933_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|148aa|up_0|NZ_CP035466.1_3356040_3356484_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|281aa|down_0|NZ_CP035466.1_3357566_3358409_-	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|153aa|down_1|NZ_CP035466.1_3358453_3358912_-	PRK01617, PRK01617, hypothetical protein; Provisional	NA|300aa|down_2|NZ_CP035466.1_3359022_3359922_+	PRK10279, PRK10279, patatin-like phospholipase RssA	NA|338aa|down_3|NZ_CP035466.1_3360011_3361025_+	PRK10693, PRK10693, two-component system response regulator RssB	NA|301aa|down_4|NZ_CP035466.1_3361222_3362125_+	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU	NA|136aa|down_5|NZ_CP035466.1_3362250_3362658_-	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS	NA|207aa|down_6|NZ_CP035466.1_3363207_3363828_+	PRK04296, PRK04296, thymidine kinase; Provisional	NA|893aa|down_7|NZ_CP035466.1_3364010_3366689_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|216aa|down_8|NZ_CP035466.1_3367167_3367815_+	PRK11111, PRK11111, YchE family NAAT transporter	NA|544aa|down_9|NZ_CP035466.1_3368565_3370197_+	PRK15104, PRK15104, oligopeptide ABC transporter substrate-binding protein OppA; Provisional
