assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006770685.1_ASM677068v1	NZ_CP023654	Pediococcus acidilactici strain JQII-5 chromosome, complete genome	1	446407-447169	1,1,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2	csa3,cas9,cas1,cas2,csn2,DEDDh,DinG,cas3	Type II-B,Type II-C,Type II-A	GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC,GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC,GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATCN,GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATCA	36,36,37,37	0	0	NA	NA	NA:NA:NA:NA	9,11,11,9	11	TypeII-B,TypeII-C,TypeII-A	csa3,cas9,cas1,cas2,csn2,DEDDh,DinG,cas3	NA|148aa|up_9|NZ_CP023654.1_432679_433123_-,NA	NA|148aa|up_9|NZ_CP023654.1_432679_433123_-	NA	NA|250aa|up_8|NZ_CP023654.1_433189_433939_-	cd15778, Lreu_0056_like, Proteins similar to Lactobacillus reuteri ORF 0056	NA|215aa|up_7|NZ_CP023654.1_434412_435057_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|470aa|up_6|NZ_CP023654.1_435248_436658_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|845aa|up_5|NZ_CP023654.1_436684_439219_+	cd09601, M1_APN-Q_like, Peptidase M1 aminopeptidase N catalytic domain family which includes aminopeptidase N (APN), aminopeptidase Q (APQ), tricorn interacting factor F3, and endoplasmic reticulum aminopeptidase 1 (ERAP1)	NA|192aa|up_4|NZ_CP023654.1_439446_440022_-	pfam10351, Apt1, Golgi-body localization protein domain	cas9|1367aa|up_3|NZ_CP023654.1_440205_444306_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|302aa|up_2|NZ_CP023654.1_444521_445427_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_1|NZ_CP023654.1_445404_445710_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|224aa|up_0|NZ_CP023654.1_445706_446378_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|216aa|down_0|NZ_CP023654.1_447817_448465_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|down_1|NZ_CP023654.1_448654_448939_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|541aa|down_2|NZ_CP023654.1_448961_450584_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|611aa|down_3|NZ_CP023654.1_450883_452716_+	pfam13520, AA_permease_2, Amino acid permease	NA|392aa|down_4|NZ_CP023654.1_452937_454113_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|213aa|down_5|NZ_CP023654.1_454180_454819_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|440aa|down_6|NZ_CP023654.1_454850_456170_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|129aa|down_7|NZ_CP023654.1_456454_456841_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|185aa|down_8|NZ_CP023654.1_456969_457524_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|788aa|down_9|NZ_CP023654.1_457672_460036_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed
GCF_006770685.1_ASM677068v1	NZ_CP023654	Pediococcus acidilactici strain JQII-5 chromosome, complete genome	2	655948-656051	2	CRISPRCasFinder	no		csa3,cas9,cas1,cas2,csn2,DEDDh,DinG,cas3	Orphan	TTAGCTCAGTTGGGAGAGCATCTG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas9,cas1,cas2,csn2,DEDDh,DinG,cas3	NA|85aa|up_9|NZ_CP023654.1_639335_639590_+,NA|63aa|up_6|NZ_CP023654.1_643832_644021_+,NA|244aa|down_0|NZ_CP023654.1_657981_658713_-	NA|85aa|up_9|NZ_CP023654.1_639335_639590_+	NA	NA|326aa|up_8|NZ_CP023654.1_640207_641185_+	PRK05458, PRK05458, guanosine 5'-monophosphate oxidoreductase; Provisional	NA|736aa|up_7|NZ_CP023654.1_641409_643617_-	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|63aa|up_6|NZ_CP023654.1_643832_644021_+	NA	NA|89aa|up_5|NZ_CP023654.1_644163_644430_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|575aa|up_4|NZ_CP023654.1_644429_646154_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|258aa|up_3|NZ_CP023654.1_646226_647000_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|396aa|up_2|NZ_CP023654.1_647085_648273_+	cd03817, GT4_UGDG-like, UDP-Glc:1,2-diacylglycerol 3-a-glucosyltransferase and similar proteins	NA|338aa|up_1|NZ_CP023654.1_648303_649317_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|335aa|up_0|NZ_CP023654.1_649366_650371_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|244aa|down_0|NZ_CP023654.1_657981_658713_-	NA	NA|397aa|down_1|NZ_CP023654.1_658884_660075_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|490aa|down_2|NZ_CP023654.1_660250_661720_+	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|188aa|down_3|NZ_CP023654.1_661799_662363_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|212aa|down_4|NZ_CP023654.1_662355_662991_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|806aa|down_5|NZ_CP023654.1_663396_665814_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|561aa|down_6|NZ_CP023654.1_666070_667753_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|240aa|down_7|NZ_CP023654.1_667764_668484_+	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|277aa|down_8|NZ_CP023654.1_668590_669421_-	cd01171, YXKO-related, B	NA|154aa|down_9|NZ_CP023654.1_669546_670008_+	pfam00582, Usp, Universal stress protein family
GCF_006770685.1_ASM677068v1	NZ_CP023654	Pediococcus acidilactici strain JQII-5 chromosome, complete genome	3	1528424-1528580	3	PILER-CR	no		csa3,cas9,cas1,cas2,csn2,DEDDh,DinG,cas3	Orphan	ATCTCTTCGTCGCCTAGCTCCTCGACATTACTGTGAC	37	0	0	NA	NA	NA	2	2	Orphan	csa3,cas9,cas1,cas2,csn2,DEDDh,DinG,cas3	NA,NA|30aa|down_0|NZ_CP023654.1_1529131_1529221_+	NA|121aa|up_9|NZ_CP023654.1_1518284_1518647_-	pfam07843, DUF1634, Protein of unknown function (DUF1634)	NA|282aa|up_8|NZ_CP023654.1_1518647_1519493_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|723aa|up_7|NZ_CP023654.1_1519657_1521826_-	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|523aa|up_6|NZ_CP023654.1_1521929_1523498_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|135aa|up_5|NZ_CP023654.1_1523564_1523969_-	cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate cytidylyltransferase	NA|377aa|up_4|NZ_CP023654.1_1524044_1525175_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|185aa|up_3|NZ_CP023654.1_1525255_1525810_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|272aa|up_2|NZ_CP023654.1_1525902_1526718_-	PRK14135, recX, recombination regulator RecX; Provisional	NA|153aa|up_1|NZ_CP023654.1_1526770_1527229_+	PRK07308, PRK07308, flavodoxin; Validated	NA|209aa|up_0|NZ_CP023654.1_1527431_1528058_-	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|30aa|down_0|NZ_CP023654.1_1529131_1529221_+	NA	NA|162aa|down_1|NZ_CP023654.1_1529368_1529854_+	cd17255, RMtype1_S_Fco49512ORF2615P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Flavobacterium columnare S subunit (S	NA|310aa|down_2|NZ_CP023654.1_1529850_1530780_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|155aa|down_3|NZ_CP023654.1_1530797_1531262_-	cd16961, RMtype1_S_TRD-CR_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR) and similar domains	NA|1032aa|down_4|NZ_CP023654.1_1531327_1534423_-	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|386aa|down_5|NZ_CP023654.1_1534485_1535643_-	cd17494, RMtype1_S_Sma198ORF994P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Streptococcus macedonicus ACA-DC 198 S subunit (S1	NA|860aa|down_6|NZ_CP023654.1_1535642_1538222_-	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|74aa|down_7|NZ_CP023654.1_1538238_1538460_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|872aa|down_8|NZ_CP023654.1_1538473_1541089_-	COG1204, COG1204, Superfamily II helicase [General function prediction only]	NA|440aa|down_9|NZ_CP023654.1_1541093_1542413_-	pfam08878, DUF1837, Domain of unknown function (DUF1837)
