assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006770385.1_ASM677038v1	NZ_CP021398	Bordetella hinzii strain 14-3425 chromosome, complete genome	1	749413-749623	1	CRT	no		csa3,WYL,DEDDh,DinG	Orphan	CCAGGGCCGCCGCCAGGG	18	3	13	749431-749460|749431-749460|749479-749496|749479-749496|749479-749496|749479-749496|749479-749496|749479-749496|749479-749496|749479-749496|749479-749496|749515-749544|749515-749544	NZ_CP021398.1_749407-749436|NZ_CP021398.1_749395-749424|NZ_CP021398.1_749407-749424|NZ_CP021398.1_749395-749412|NZ_CP021398.1_3319148-3319165|NZ_CP021398.1_3790465-3790482|NZ_CP021398.1_3137578-3137561|NZ_CP021398.1_3231658-3231641|NZ_CP021398.1_3551150-3551133|NZ_CP021398.1_3685490-3685473|NZ_CP021398.1_3786583-3786566|NZ_CP021398.1_749395-749424|NZ_CP021398.1_749407-749436	NA	4	4	Orphan	csa3,WYL,DEDDh,DinG	NA|119aa|up_9|NZ_CP021398.1_743513_743870_-,NA|72aa|up_5|NZ_CP021398.1_745532_745748_-,NA|107aa|up_4|NZ_CP021398.1_745941_746262_+,NA|70aa|down_0|NZ_CP021398.1_749682_749892_+,NA|108aa|down_1|NZ_CP021398.1_750310_750634_+,NA|147aa|down_2|NZ_CP021398.1_750725_751166_+,NA|70aa|down_3|NZ_CP021398.1_751162_751372_+,NA|217aa|down_4|NZ_CP021398.1_751474_752125_+,NA|206aa|down_5|NZ_CP021398.1_752136_752754_+,NA|154aa|down_8|NZ_CP021398.1_754381_754843_+	NA|119aa|up_9|NZ_CP021398.1_743513_743870_-	NA	NA|120aa|up_8|NZ_CP021398.1_743866_744226_-	pfam16786, RecA_dep_nuc, Recombination enhancement, RecA-dependent nuclease	NA|139aa|up_7|NZ_CP021398.1_744359_744776_-	pfam05772, NinB, NinB protein	NA|104aa|up_6|NZ_CP021398.1_744775_745087_-	pfam05269, Phage_CII, Bacteriophage CII protein	NA|72aa|up_5|NZ_CP021398.1_745532_745748_-	NA	NA|107aa|up_4|NZ_CP021398.1_745941_746262_+	NA	NA|73aa|up_3|NZ_CP021398.1_746303_746522_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|126aa|up_2|NZ_CP021398.1_746615_746993_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|269aa|up_1|NZ_CP021398.1_747084_747891_+	pfam10754, DUF2569, Protein of unknown function (DUF2569)	NA|157aa|up_0|NZ_CP021398.1_748510_748981_+	PHA00280, PHA00280, putative NHN endonuclease	NA|70aa|down_0|NZ_CP021398.1_749682_749892_+	NA	NA|108aa|down_1|NZ_CP021398.1_750310_750634_+	NA	NA|147aa|down_2|NZ_CP021398.1_750725_751166_+	NA	NA|70aa|down_3|NZ_CP021398.1_751162_751372_+	NA	NA|217aa|down_4|NZ_CP021398.1_751474_752125_+	NA	NA|206aa|down_5|NZ_CP021398.1_752136_752754_+	NA	NA|113aa|down_6|NZ_CP021398.1_752828_753167_+	pfam13392, HNH_3, HNH endonuclease	NA|169aa|down_7|NZ_CP021398.1_753163_753670_+	pfam05565, Sipho_Gp157, Siphovirus Gp157	NA|154aa|down_8|NZ_CP021398.1_754381_754843_+	NA	NA|339aa|down_9|NZ_CP021398.1_754839_755856_+	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau
GCF_006770385.1_ASM677038v1	NZ_CP021398	Bordetella hinzii strain 14-3425 chromosome, complete genome	2	2822160-2822261	1	CRISPRCasFinder	no		csa3,WYL,DEDDh,DinG	Orphan	CGCCGCCCGCGCCGCCGCCCGCG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,DinG	NA|109aa|up_0|NZ_CP021398.1_2815225_2815552_+,NA	NA|208aa|up_9|NZ_CP021398.1_2804389_2805013_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|410aa|up_8|NZ_CP021398.1_2805086_2806316_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|300aa|up_7|NZ_CP021398.1_2806341_2807241_-	cd01311, PDC_hydrolase, 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM)	NA|744aa|up_6|NZ_CP021398.1_2807365_2809597_-	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|341aa|up_5|NZ_CP021398.1_2809812_2810835_-	PRK09774, PRK09774, fec operon regulator FecR; Reviewed	NA|168aa|up_4|NZ_CP021398.1_2810831_2811335_-	PRK12528, PRK12528, RNA polymerase sigma factor; Provisional	NA|462aa|up_3|NZ_CP021398.1_2811454_2812840_-	TIGR00782, di-heme_cytochrome_cp, cytochrome c oxidase, cbb3-type, subunit III	NA|552aa|up_2|NZ_CP021398.1_2812839_2814495_-	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|184aa|up_1|NZ_CP021398.1_2814494_2815046_-	pfam12318, FAD-SLDH, Membrane bound FAD containing D-sorbitol dehydrogenase	NA|109aa|up_0|NZ_CP021398.1_2815225_2815552_+	NA	NA|200aa|down_0|NZ_CP021398.1_2823178_2823778_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|289aa|down_1|NZ_CP021398.1_2823896_2824763_-	PRK11752, PRK11752, putative S-transferase; Provisional	NA|515aa|down_2|NZ_CP021398.1_2825448_2826993_+	cd08508, PBP2_NikA_DppA_OppA_like_1, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|306aa|down_3|NZ_CP021398.1_2826979_2827897_-	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold	NA|368aa|down_4|NZ_CP021398.1_2827988_2829092_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|99aa|down_5|NZ_CP021398.1_2829072_2829369_+	pfam13510, Fer2_4, 2Fe-2S iron-sulfur cluster binding domain	NA|487aa|down_6|NZ_CP021398.1_2829365_2830826_+	TIGR01372, sarcosine_oxidase_alpha_subunit, sarcosine oxidase, alpha subunit family, heterotetrameric form	NA|375aa|down_7|NZ_CP021398.1_2830822_2831947_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|314aa|down_8|NZ_CP021398.1_2831943_2832885_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|289aa|down_9|NZ_CP021398.1_2832881_2833748_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
GCF_006770385.1_ASM677038v1	NZ_CP021398	Bordetella hinzii strain 14-3425 chromosome, complete genome	3	2822340-2822471	2	CRISPRCasFinder	no		csa3,WYL,DEDDh,DinG	Orphan	CGCCGCCCGCGCCGCCGCCCGCG	23	1	1	2822363-2822378	NZ_CP021398.1_3806407-3806422	NA	2	2	Orphan	csa3,WYL,DEDDh,DinG	NA|109aa|up_0|NZ_CP021398.1_2815225_2815552_+,NA	NA|208aa|up_9|NZ_CP021398.1_2804389_2805013_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|410aa|up_8|NZ_CP021398.1_2805086_2806316_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|300aa|up_7|NZ_CP021398.1_2806341_2807241_-	cd01311, PDC_hydrolase, 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM)	NA|744aa|up_6|NZ_CP021398.1_2807365_2809597_-	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|341aa|up_5|NZ_CP021398.1_2809812_2810835_-	PRK09774, PRK09774, fec operon regulator FecR; Reviewed	NA|168aa|up_4|NZ_CP021398.1_2810831_2811335_-	PRK12528, PRK12528, RNA polymerase sigma factor; Provisional	NA|462aa|up_3|NZ_CP021398.1_2811454_2812840_-	TIGR00782, di-heme_cytochrome_cp, cytochrome c oxidase, cbb3-type, subunit III	NA|552aa|up_2|NZ_CP021398.1_2812839_2814495_-	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|184aa|up_1|NZ_CP021398.1_2814494_2815046_-	pfam12318, FAD-SLDH, Membrane bound FAD containing D-sorbitol dehydrogenase	NA|109aa|up_0|NZ_CP021398.1_2815225_2815552_+	NA	NA|200aa|down_0|NZ_CP021398.1_2823178_2823778_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|289aa|down_1|NZ_CP021398.1_2823896_2824763_-	PRK11752, PRK11752, putative S-transferase; Provisional	NA|515aa|down_2|NZ_CP021398.1_2825448_2826993_+	cd08508, PBP2_NikA_DppA_OppA_like_1, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|306aa|down_3|NZ_CP021398.1_2826979_2827897_-	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold	NA|368aa|down_4|NZ_CP021398.1_2827988_2829092_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|99aa|down_5|NZ_CP021398.1_2829072_2829369_+	pfam13510, Fer2_4, 2Fe-2S iron-sulfur cluster binding domain	NA|487aa|down_6|NZ_CP021398.1_2829365_2830826_+	TIGR01372, sarcosine_oxidase_alpha_subunit, sarcosine oxidase, alpha subunit family, heterotetrameric form	NA|375aa|down_7|NZ_CP021398.1_2830822_2831947_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|314aa|down_8|NZ_CP021398.1_2831943_2832885_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|289aa|down_9|NZ_CP021398.1_2832881_2833748_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
GCF_006770385.1_ASM677038v1	NZ_CP021398	Bordetella hinzii strain 14-3425 chromosome, complete genome	4	2822565-2822794	3	CRISPRCasFinder	no		csa3,WYL,DEDDh,DinG	Orphan	CGCCGCCCGCGCCGCCGCCCGCG	23	0	0	NA	NA	NA	4	4	Orphan	csa3,WYL,DEDDh,DinG	NA|109aa|up_0|NZ_CP021398.1_2815225_2815552_+,NA	NA|208aa|up_9|NZ_CP021398.1_2804389_2805013_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|410aa|up_8|NZ_CP021398.1_2805086_2806316_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|300aa|up_7|NZ_CP021398.1_2806341_2807241_-	cd01311, PDC_hydrolase, 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM)	NA|744aa|up_6|NZ_CP021398.1_2807365_2809597_-	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|341aa|up_5|NZ_CP021398.1_2809812_2810835_-	PRK09774, PRK09774, fec operon regulator FecR; Reviewed	NA|168aa|up_4|NZ_CP021398.1_2810831_2811335_-	PRK12528, PRK12528, RNA polymerase sigma factor; Provisional	NA|462aa|up_3|NZ_CP021398.1_2811454_2812840_-	TIGR00782, di-heme_cytochrome_cp, cytochrome c oxidase, cbb3-type, subunit III	NA|552aa|up_2|NZ_CP021398.1_2812839_2814495_-	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|184aa|up_1|NZ_CP021398.1_2814494_2815046_-	pfam12318, FAD-SLDH, Membrane bound FAD containing D-sorbitol dehydrogenase	NA|109aa|up_0|NZ_CP021398.1_2815225_2815552_+	NA	NA|200aa|down_0|NZ_CP021398.1_2823178_2823778_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|289aa|down_1|NZ_CP021398.1_2823896_2824763_-	PRK11752, PRK11752, putative S-transferase; Provisional	NA|515aa|down_2|NZ_CP021398.1_2825448_2826993_+	cd08508, PBP2_NikA_DppA_OppA_like_1, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|306aa|down_3|NZ_CP021398.1_2826979_2827897_-	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold	NA|368aa|down_4|NZ_CP021398.1_2827988_2829092_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|99aa|down_5|NZ_CP021398.1_2829072_2829369_+	pfam13510, Fer2_4, 2Fe-2S iron-sulfur cluster binding domain	NA|487aa|down_6|NZ_CP021398.1_2829365_2830826_+	TIGR01372, sarcosine_oxidase_alpha_subunit, sarcosine oxidase, alpha subunit family, heterotetrameric form	NA|375aa|down_7|NZ_CP021398.1_2830822_2831947_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|314aa|down_8|NZ_CP021398.1_2831943_2832885_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|289aa|down_9|NZ_CP021398.1_2832881_2833748_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
