assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006766145.1_ASM676614v1	NZ_CP041344	Enterococcus faecalis strain DM01 chromosome, complete genome	1	1543143-1543904	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9,cas3	WYL,DEDDh,csa3,cas3,cas14j,DinG,csn2,cas2,cas1,cas9	Type II-B,Type II-A,Type II-C	GTTTTACTGATAAGAAATTATTGAGAGTACAAAAAC,GTTTTACTGATAAGAAATTATTGAGAGTACAAAAAC,GTTTTACTGATAAGAAATTATTGAGAGTACAAAAAC	36,36,36	0	0	NA	NA	NA:NA:NA	11,11,9	11	TypeII-B,TypeII-A,TypeII-C	WYL,DEDDh,csa3,cas3,cas14j,DinG,csn2,cas2,cas1,cas9	NA,NA|68aa|down_8|NZ_CP041344.1_1555779_1555983_+	NA|321aa|up_9|NZ_CP041344.1_1534237_1535200_+	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|119aa|up_8|NZ_CP041344.1_1535235_1535592_-	pfam04020, Phage_holin_4_2, Mycobacterial 4 TMS phage holin, superfamily IV	NA|108aa|up_7|NZ_CP041344.1_1535591_1535915_-	pfam04024, PspC, PspC domain	NA|534aa|up_6|NZ_CP041344.1_1535989_1537591_-	COG3595, COG3595, Uncharacterized conserved protein [Function unknown]	NA|226aa|up_5|NZ_CP041344.1_1537800_1538478_-	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|253aa|up_4|NZ_CP041344.1_1538492_1539251_-	PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional	NA|270aa|up_3|NZ_CP041344.1_1539261_1540071_-	PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional	NA|295aa|up_2|NZ_CP041344.1_1540087_1540972_-	COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]	NA|307aa|up_1|NZ_CP041344.1_1540971_1541892_-	COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]	NA|285aa|up_0|NZ_CP041344.1_1542014_1542869_-	TIGR02136, ptsS_2, phosphate binding protein	csn2|353aa|down_0|NZ_CP041344.1_1543981_1545040_-	cd12217, Stu0660_Csn2, Stu0660-like CRISPR/Cas system-associated protein Csn2	cas2|103aa|down_1|NZ_CP041344.1_1545039_1545348_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|307aa|down_2|NZ_CP041344.1_1545359_1546280_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1151aa|down_3|NZ_CP041344.1_1546485_1549938_-	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	NA|295aa|down_4|NZ_CP041344.1_1550386_1551271_-	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning]	NA|229aa|down_5|NZ_CP041344.1_1551263_1551950_-	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	NA|368aa|down_6|NZ_CP041344.1_1552055_1553160_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|846aa|down_7|NZ_CP041344.1_1553233_1555771_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|68aa|down_8|NZ_CP041344.1_1555779_1555983_+	NA	NA|184aa|down_9|NZ_CP041344.1_1556026_1556578_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
GCF_006766145.1_ASM676614v1	NZ_CP041344	Enterococcus faecalis strain DM01 chromosome, complete genome	2	1751654-1751822	2,2	CRISPRCasFinder,PILER-CR	no		WYL,DEDDh,csa3,cas3,cas14j,DinG,csn2,cas2,cas1,cas9	Orphan	GTTTTGGTGCCATTCTAAACAACAT,GTTTTGGTACCATTCTAAACAACATGACTCTAAAACG	25,37	0	0	NA	NA	II-A,II-B:II-A,II-B	2,2	2	Orphan	WYL,DEDDh,csa3,cas3,cas14j,DinG,csn2,cas2,cas1,cas9	NA|44aa|up_9|NZ_CP041344.1_1741716_1741848_-,NA|33aa|up_1|NZ_CP041344.1_1751340_1751439_-,NA|67aa|up_0|NZ_CP041344.1_1751435_1751636_-,NA|50aa|down_6|NZ_CP041344.1_1758047_1758197_-	NA|44aa|up_9|NZ_CP041344.1_1741716_1741848_-	NA	NA|404aa|up_8|NZ_CP041344.1_1741924_1743136_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|302aa|up_7|NZ_CP041344.1_1743164_1744070_-	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated	NA|327aa|up_6|NZ_CP041344.1_1744191_1745172_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|589aa|up_5|NZ_CP041344.1_1745251_1747018_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|578aa|up_4|NZ_CP041344.1_1747014_1748748_-	TIGR02857, transport_ATP-binding_protein, thiol reductant ABC exporter, CydD subunit	NA|338aa|up_3|NZ_CP041344.1_1748752_1749766_-	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|473aa|up_2|NZ_CP041344.1_1749762_1751181_-	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|33aa|up_1|NZ_CP041344.1_1751340_1751439_-	NA	NA|67aa|up_0|NZ_CP041344.1_1751435_1751636_-	NA	NA|288aa|down_0|NZ_CP041344.1_1751978_1752842_-	smart00871, AraC_E_bind, Bacterial transcription activator, effector binding domain	NA|694aa|down_1|NZ_CP041344.1_1752926_1755008_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|122aa|down_2|NZ_CP041344.1_1755138_1755504_-	pfam06279, DUF1033, Protein of unknown function (DUF1033)	NA|190aa|down_3|NZ_CP041344.1_1755601_1756171_-	pfam13305, WHG, WHG domain	NA|172aa|down_4|NZ_CP041344.1_1756303_1756819_+	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|413aa|down_5|NZ_CP041344.1_1756835_1758074_+	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|50aa|down_6|NZ_CP041344.1_1758047_1758197_-	NA	NA|375aa|down_7|NZ_CP041344.1_1758253_1759378_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|115aa|down_8|NZ_CP041344.1_1759603_1759948_-	pfam08866, DUF1831, Putative amino acid metabolism	NA|382aa|down_9|NZ_CP041344.1_1760015_1761161_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
GCF_006766145.1_ASM676614v1	NZ_CP041344	Enterococcus faecalis strain DM01 chromosome, complete genome	3	1945980-1946093	3	CRISPRCasFinder	no	csa3	WYL,DEDDh,csa3,cas3,cas14j,DinG,csn2,cas2,cas1,cas9	Type I-A	ACAACGTTCCCTTTGGTCACCTTGTGCTGTTC	32	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,cas14j,DinG,csn2,cas2,cas1,cas9	NA|46aa|up_4|NZ_CP041344.1_1941388_1941526_-,NA	NA|294aa|up_9|NZ_CP041344.1_1937833_1938715_-	PRK09377, tsf, elongation factor Ts; Provisional	NA|262aa|up_8|NZ_CP041344.1_1938820_1939606_-	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|146aa|up_7|NZ_CP041344.1_1939789_1940227_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	NA|259aa|up_6|NZ_CP041344.1_1940246_1941023_-	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|92aa|up_5|NZ_CP041344.1_1941129_1941405_+	COG1254, AcyP, Acylphosphatases [Energy production and conversion]	NA|46aa|up_4|NZ_CP041344.1_1941388_1941526_-	NA	NA|311aa|up_3|NZ_CP041344.1_1941571_1942504_+	PRK02463, PRK02463, OxaA-like protein precursor; Provisional	NA|64aa|up_2|NZ_CP041344.1_1942537_1942729_-	PRK07758, PRK07758, hypothetical protein; Provisional	NA|695aa|up_1|NZ_CP041344.1_1942768_1944853_-	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated	NA|303aa|up_0|NZ_CP041344.1_1944854_1945763_-	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated	NA|263aa|down_0|NZ_CP041344.1_1946409_1947198_-	TIGR00613, DNA_repair_protein_RecO, DNA repair protein RecO	NA|301aa|down_1|NZ_CP041344.1_1947280_1948183_-	PRK00089, era, GTPase Era; Reviewed	NA|136aa|down_2|NZ_CP041344.1_1948196_1948604_-	cd14265, UDPK_IM_like, Integral membrane undecaprenol kinase and similar enzymes	NA|160aa|down_3|NZ_CP041344.1_1948581_1949061_-	PRK00016, PRK00016, metal-binding heat shock protein; Provisional	NA|733aa|down_4|NZ_CP041344.1_1949060_1951259_-	COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only]	NA|325aa|down_5|NZ_CP041344.1_1951287_1952262_-	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]	NA|150aa|down_6|NZ_CP041344.1_1952444_1952894_-	pfam09424, YqeY, Yqey-like protein	NA|59aa|down_7|NZ_CP041344.1_1952919_1953096_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|145aa|down_8|NZ_CP041344.1_1953261_1953696_-	cd07153, Fur_like, Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators	NA|277aa|down_9|NZ_CP041344.1_1953827_1954658_+	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase
GCF_006766145.1_ASM676614v1	NZ_CP041344	Enterococcus faecalis strain DM01 chromosome, complete genome	4	2603017-2603090	4	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,cas14j,DinG,csn2,cas2,cas1,cas9	Orphan	ATAGTTGGCGAGCAACAGAAAAAC	24	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,cas14j,DinG,csn2,cas2,cas1,cas9	NA,NA	NA|289aa|up_9|NZ_CP041344.1_2591354_2592221_-	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]	NA|435aa|up_8|NZ_CP041344.1_2592388_2593693_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|423aa|up_7|NZ_CP041344.1_2593685_2594954_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|150aa|up_6|NZ_CP041344.1_2595162_2595612_+	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL	NA|239aa|up_5|NZ_CP041344.1_2595652_2596369_-	pfam13731, WxL, WxL domain surface cell wall-binding	NA|237aa|up_4|NZ_CP041344.1_2596466_2597177_-	pfam13731, WxL, WxL domain surface cell wall-binding	NA|233aa|up_3|NZ_CP041344.1_2597260_2597959_-	pfam13731, WxL, WxL domain surface cell wall-binding	NA|238aa|up_2|NZ_CP041344.1_2598357_2599071_-	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|915aa|up_1|NZ_CP041344.1_2599332_2602077_+	COG1554, ATH1, Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]	NA|217aa|up_0|NZ_CP041344.1_2602091_2602742_+	TIGR01990, bPGM, beta-phosphoglucomutase	NA|148aa|down_0|NZ_CP041344.1_2603306_2603750_+	pfam18813, PBECR4, phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4	NA|51aa|down_1|NZ_CP041344.1_2603990_2604143_-	pfam16935, Hol_Tox, Putative Holin-like Toxin (Hol-Tox)	NA|178aa|down_2|NZ_CP041344.1_2604950_2605484_+	pfam02517, Abi, CAAX protease self-immunity	NA|324aa|down_3|NZ_CP041344.1_2605537_2606509_-	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|146aa|down_4|NZ_CP041344.1_2606683_2607121_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|185aa|down_5|NZ_CP041344.1_2607253_2607808_-	cd00555, Maf, Nucleotide binding protein Maf	NA|711aa|down_6|NZ_CP041344.1_2607832_2609965_-	COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]	NA|859aa|down_7|NZ_CP041344.1_2609996_2612573_-	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|124aa|down_8|NZ_CP041344.1_2612573_2612945_-	COG4550, COG4550, Predicted membrane protein [Function unknown]	NA|266aa|down_9|NZ_CP041344.1_2613033_2613831_-	pfam13277, YmdB, YmdB-like protein
