assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006742785.1_ASM674278v1	NZ_AP019755	Nitrosomonas stercoris strain KYUHI-S chromosome 1	1	856478-857430	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10	csa3,PD-DExK,DEDDh,RT,cas2,cas1,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,TnsE_C,cas3,cas5,cas7,cas6e,cse2gr11,cas8e,cas3HD,DinG	Type III-A,Type III-C,Type III-B,Type III-D	GTCTCAATCCCTTTGAAATCAGGGCATTAGTGTCAC,GTCTCAATCCCTTTGAAATCAGGGCATTAGTGTCAC,GTCTCAATCCCTTTGAAATCAGGGCATTAGTGTCAC	36,36,36	0	0	NA	NA	NA:NA:NA	13,13,12	13	TypeIII-A,TypeIII-C,TypeIII-B,TypeIII-D	csa3,PD-DExK,DEDDh,RT,cas2,cas1,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,TnsE_C,cas3,cas5,cas7,cas6e,cse2gr11,cas8e,cas3HD,DinG	NA,NA	NA|644aa|up_9|NZ_AP019755.1_843649_845581_+	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|216aa|up_8|NZ_AP019755.1_845555_846203_+	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|256aa|up_7|NZ_AP019755.1_846242_847010_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|278aa|up_6|NZ_AP019755.1_847233_848067_+	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|460aa|up_5|NZ_AP019755.1_848339_849719_-	PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional	NA|381aa|up_4|NZ_AP019755.1_850030_851173_-	PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit beta; Validated	NA|949aa|up_3|NZ_AP019755.1_851224_854071_-	PRK07207, PRK07207, ribonucleoside-diphosphate reductase subunit alpha	NA|164aa|up_2|NZ_AP019755.1_854450_854942_+	cd09319, TDT_like_1, The Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|266aa|up_1|NZ_AP019755.1_854924_855723_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|207aa|up_0|NZ_AP019755.1_855791_856412_+	cd09319, TDT_like_1, The Tellurite-resistance/Dicarboxylate Transporter (TDT) family	cas2|95aa|down_0|NZ_AP019755.1_857664_857949_-	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas1|329aa|down_1|NZ_AP019755.1_857958_858945_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|96aa|down_2|NZ_AP019755.1_858956_859244_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	csx1|375aa|down_3|NZ_AP019755.1_859737_860862_-	TIGR02584, hypothetical_protein_NE0113, CRISPR-associated protein, NE0113 family	csx1|390aa|down_4|NZ_AP019755.1_860913_862083_-	TIGR02221, CRISPR-associated_protein_Csx1_2, CRISPR-associated protein, TM1812 family	csx16|99aa|down_5|NZ_AP019755.1_862079_862376_-	TIGR02620, hypothetical_protein, putative CRISPR-associated protein, VVA1548 family	cas6|319aa|down_6|NZ_AP019755.1_862372_863329_-	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	NA|134aa|down_7|NZ_AP019755.1_863325_863727_-	cd18682, PIN_VapC-like, Uncharacterized subfamily of the VapC (virulence-associated protein C)-like family of the PIN domain superfamily	NA|86aa|down_8|NZ_AP019755.1_863723_863981_-	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain	csm5gr7|534aa|down_9|NZ_AP019755.1_864027_865629_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]
GCF_006742785.1_ASM674278v1	NZ_AP019755	Nitrosomonas stercoris strain KYUHI-S chromosome 1	2	871927-872939	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10	csa3,PD-DExK,DEDDh,RT,cas2,cas1,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,TnsE_C,cas3,cas5,cas7,cas6e,cse2gr11,cas8e,cas3HD,DinG	Type III-A,Type III-C,Type III-B,Type III-D	GTCTCAATCCCTTTGAAATCAGGGCATTAGTGTCAC,GTGACACTAATGCCCTGATTTCAAAGGGATTGAGAC,GTGACACTAATGCCCTGATTTCAAAGGGATTGAGAC	36,36,36	0	0	NA	NA	NA:NA:NA	14,14,14	14	TypeIII-A,TypeIII-C,TypeIII-B,TypeIII-D	csa3,PD-DExK,DEDDh,RT,cas2,cas1,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,TnsE_C,cas3,cas5,cas7,cas6e,cse2gr11,cas8e,cas3HD,DinG	NA|285aa|up_0|NZ_AP019755.1_870668_871523_-,NA|49aa|down_2|NZ_AP019755.1_876352_876499_+,NA|254aa|down_5|NZ_AP019755.1_881495_882257_-	csx16|99aa|up_9|NZ_AP019755.1_862079_862376_-	TIGR02620, hypothetical_protein, putative CRISPR-associated protein, VVA1548 family	cas6|319aa|up_8|NZ_AP019755.1_862372_863329_-	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	NA|134aa|up_7|NZ_AP019755.1_863325_863727_-	cd18682, PIN_VapC-like, Uncharacterized subfamily of the VapC (virulence-associated protein C)-like family of the PIN domain superfamily	NA|86aa|up_6|NZ_AP019755.1_863723_863981_-	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain	csm5gr7|534aa|up_5|NZ_AP019755.1_864027_865629_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|318aa|up_4|NZ_AP019755.1_865625_866579_-	TIGR01903, Hypothetical_protein	csm3gr7|239aa|up_3|NZ_AP019755.1_866582_867299_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|129aa|up_2|NZ_AP019755.1_867357_867744_-	cd09647, Csm2_III-A, CRISPR/Cas system-associated protein Csm2	cas10|859aa|up_1|NZ_AP019755.1_867814_870391_-	TIGR02578, CRISPR-associated_protein_Cas10/Csm1, CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE	NA|285aa|up_0|NZ_AP019755.1_870668_871523_-	NA	NA|599aa|down_0|NZ_AP019755.1_873252_875049_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|406aa|down_1|NZ_AP019755.1_875070_876288_+	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|49aa|down_2|NZ_AP019755.1_876352_876499_+	NA	NA|321aa|down_3|NZ_AP019755.1_879504_880467_-	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|136aa|down_4|NZ_AP019755.1_880466_880874_-	pfam02675, AdoMet_dc, S-adenosylmethionine decarboxylase	NA|254aa|down_5|NZ_AP019755.1_881495_882257_-	NA	NA|665aa|down_6|NZ_AP019755.1_882256_884251_-	NF033449, BREX_PglZ_3, BREX-3 system phosphatase PglZ	NA|966aa|down_7|NZ_AP019755.1_884247_887145_-	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA	NA|436aa|down_8|NZ_AP019755.1_887200_888508_-	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]	NA|704aa|down_9|NZ_AP019755.1_888507_890619_-	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]
GCF_006742785.1_ASM674278v1	NZ_AP019755	Nitrosomonas stercoris strain KYUHI-S chromosome 1	3	1468436-1469562	3,3,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3,cas3HD	csa3,PD-DExK,DEDDh,RT,cas2,cas1,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,TnsE_C,cas3,cas5,cas7,cas6e,cse2gr11,cas8e,cas3HD,DinG	Type I-E	AGAAACACCCCCACGGTCGTGGGGAAGAC,GAAACACCCCCACGGTCGTGGGGAAGAC,GAAACACCCCCACGGTCGTGGGGAAGAC	29,28,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	18,18,11	18	TypeI-E	csa3,PD-DExK,DEDDh,RT,cas2,cas1,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,TnsE_C,cas3,cas5,cas7,cas6e,cse2gr11,cas8e,cas3HD,DinG	NA,NA	NA|209aa|up_9|NZ_AP019755.1_1457754_1458381_+	PRK01222, PRK01222, phosphoribosylanthranilate isomerase	NA|401aa|up_8|NZ_AP019755.1_1458367_1459570_+	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|276aa|up_7|NZ_AP019755.1_1459593_1460421_+	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional	NA|297aa|up_6|NZ_AP019755.1_1460424_1461315_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|435aa|up_5|NZ_AP019755.1_1461383_1462688_+	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|221aa|up_4|NZ_AP019755.1_1462690_1463353_+	COG3147, DedD, Uncharacterized protein conserved in bacteria [Function unknown]	NA|165aa|up_3|NZ_AP019755.1_1463349_1463844_+	pfam02674, Colicin_V, Colicin V production protein	NA|506aa|up_2|NZ_AP019755.1_1464008_1465526_+	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional	NA|392aa|up_1|NZ_AP019755.1_1465542_1466718_+	PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated	NA|504aa|up_0|NZ_AP019755.1_1466764_1468276_+	PRK09224, PRK09224, threonine ammonia-lyase IlvA	cas2|95aa|down_0|NZ_AP019755.1_1469612_1469897_-	TIGR01873, CRISPR-associated_endoribonuclease_Cas2, CRISPR-associated endoribonuclease Cas2, subtype I-E/ECOLI	cas1|295aa|down_1|NZ_AP019755.1_1469874_1470759_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas5|237aa|down_2|NZ_AP019755.1_1470754_1471465_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|346aa|down_3|NZ_AP019755.1_1471473_1472511_-	pfam09344, Cas_CT1975, CT1975-like protein	cas6e|215aa|down_4|NZ_AP019755.1_1472546_1473191_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cse2gr11|181aa|down_5|NZ_AP019755.1_1473187_1473730_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|500aa|down_6|NZ_AP019755.1_1473729_1475229_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|668aa|down_7|NZ_AP019755.1_1475246_1477250_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|266aa|down_8|NZ_AP019755.1_1477223_1478022_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas3HD|234aa|down_9|NZ_AP019755.1_1477982_1478684_-	pfam18019, HD_6, HD domain
GCF_006742785.1_ASM674278v1	NZ_AP019756	Nitrosomonas stercoris strain KYUHI-S plasmid plasmid 1, complete sequence	1	6742-6867	1	CRISPRCasFinder	no			Orphan	GGTTTTAACTGAAATGTTCGCCAGGCGAACATC	33	0	0	NA	NA	NA	1	1	Orphan	csa3,PD-DExK,DEDDh,RT,cas2,cas1,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,TnsE_C,cas3,cas5,cas7,cas6e,cse2gr11,cas8e,cas3HD,DinG	NA|136aa|up_5|NZ_AP019756.1_1431_1839_-,NA|235aa|up_4|NZ_AP019756.1_1831_2536_-,NA|162aa|up_3|NZ_AP019756.1_2513_2999_-,NA|121aa|up_2|NZ_AP019756.1_3384_3747_+,NA|66aa|up_0|NZ_AP019756.1_6497_6695_+,NA|221aa|down_3|NZ_AP019756.1_9663_10326_+,NA|136aa|down_4|NZ_AP019756.1_10875_11283_+,NA|182aa|down_5|NZ_AP019756.1_11347_11893_+,NA|88aa|down_6|NZ_AP019756.1_12184_12448_+,NA|75aa|down_8|NZ_AP019756.1_12996_13221_+	NA|NA	NA	NA|NA	NA	NA|95aa|up_7|NZ_AP019756.1_225_510_-	pfam04956, TrbC, TrbC/VIRB2 family	NA|223aa|up_6|NZ_AP019756.1_512_1181_-	cd16892, LT_VirB1-like, VirB1-like subfamily	NA|136aa|up_5|NZ_AP019756.1_1431_1839_-	NA	NA|235aa|up_4|NZ_AP019756.1_1831_2536_-	NA	NA|162aa|up_3|NZ_AP019756.1_2513_2999_-	NA	NA|121aa|up_2|NZ_AP019756.1_3384_3747_+	NA	NA|918aa|up_1|NZ_AP019756.1_3730_6484_+	PRK13878, PRK13878, conjugal transfer relaxase TraI; Provisional	NA|66aa|up_0|NZ_AP019756.1_6497_6695_+	NA	NA|201aa|down_0|NZ_AP019756.1_7026_7629_-	PRK13893, PRK13893, conjugal transfer protein TrbM; Provisional	NA|268aa|down_1|NZ_AP019756.1_7790_8594_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|347aa|down_2|NZ_AP019756.1_8610_9651_+	cd16393, SPO0J_N, Thermus thermophilus stage 0 sporulation protein J-like N-terminal domain, ParB family member	NA|221aa|down_3|NZ_AP019756.1_9663_10326_+	NA	NA|136aa|down_4|NZ_AP019756.1_10875_11283_+	NA	NA|182aa|down_5|NZ_AP019756.1_11347_11893_+	NA	NA|88aa|down_6|NZ_AP019756.1_12184_12448_+	NA	NA|147aa|down_7|NZ_AP019756.1_12538_12979_+	pfam02643, DUF192, Uncharacterized ACR, COG1430	NA|75aa|down_8|NZ_AP019756.1_12996_13221_+	NA	NA|174aa|down_9|NZ_AP019756.1_13391_13913_+	PRK00024, PRK00024, DNA repair protein RadC
