assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006741505.1_ASM674150v1	NZ_AP019692	Salmonella enterica subsp. enterica serovar Senftenberg strain SL180013	1	84173-84267	1	CRISPRCasFinder	no	cas3	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Unclear	ACCGGGTCTACTGGCTCAGGGTCTAC	26	0	0	NA	NA	NA	1	1	Unclear	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA|31aa|up_5|NZ_AP019692.1_79249_79342_+,NA|160aa|up_4|NZ_AP019692.1_79542_80022_+,NA|38aa|up_2|NZ_AP019692.1_81549_81663_+,NA|155aa|up_0|NZ_AP019692.1_82583_83048_+,NA|284aa|down_6|NZ_AP019692.1_97199_98051_+	NA|314aa|up_9|NZ_AP019692.1_73195_74137_+	PRK09956, PRK09956, ISNCY family transposase	NA|301aa|up_8|NZ_AP019692.1_74179_75082_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|232aa|up_7|NZ_AP019692.1_75587_76283_+	PRK15385, PRK15385, MgtC family protein	NA|909aa|up_6|NZ_AP019692.1_76501_79228_+	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional	NA|31aa|up_5|NZ_AP019692.1_79249_79342_+	NA	NA|160aa|up_4|NZ_AP019692.1_79542_80022_+	NA	NA|227aa|up_3|NZ_AP019692.1_80250_80931_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|38aa|up_2|NZ_AP019692.1_81549_81663_+	NA	NA|286aa|up_1|NZ_AP019692.1_81715_82573_+	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|155aa|up_0|NZ_AP019692.1_82583_83048_+	NA	NA|206aa|down_0|NZ_AP019692.1_86069_86687_-	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|461aa|down_1|NZ_AP019692.1_88727_90110_+	PRK11462, PRK11462, putative transporter; Provisional	NA|773aa|down_2|NZ_AP019692.1_90121_92440_+	PRK10658, PRK10658, putative alpha-glucosidase; Provisional	NA|570aa|down_3|NZ_AP019692.1_92542_94252_-	pfam05170, AsmA, AsmA family	NA|464aa|down_4|NZ_AP019692.1_94372_95764_-	TIGR00801, Uric_acid_permease, uracil-xanthine permease	NA|402aa|down_5|NZ_AP019692.1_95991_97197_+	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	NA|284aa|down_6|NZ_AP019692.1_97199_98051_+	NA	cas3|694aa|down_7|NZ_AP019692.1_98053_100135_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|230aa|down_8|NZ_AP019692.1_100140_100830_-	PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional	NA|704aa|down_9|NZ_AP019692.1_100834_102946_-	PRK11092, PRK11092, bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
GCF_006741505.1_ASM674150v1	NZ_AP019692	Salmonella enterica subsp. enterica serovar Senftenberg strain SL180013	2	1000888-1003296	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	38,39,39	39	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|179aa|up_9|NZ_AP019692.1_989436_989973_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|NZ_AP019692.1_989969_990440_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|NZ_AP019692.1_990454_990961_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|NZ_AP019692.1_990980_991754_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|NZ_AP019692.1_991766_994466_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|NZ_AP019692.1_994545_995133_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|NZ_AP019692.1_995737_996538_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_AP019692.1_996765_998403_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_AP019692.1_998485_999784_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_AP019692.1_999919_1000591_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_AP019692.1_1003393_1004191_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_AP019692.1_1004280_1004643_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_AP019692.1_1005066_1006866_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_AP019692.1_1006865_1008578_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_AP019692.1_1008653_1009388_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_AP019692.1_1009600_1010554_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_6|NZ_AP019692.1_1010937_1013637_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|down_7|NZ_AP019692.1_1013994_1015530_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|down_8|NZ_AP019692.1_1015546_1016149_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|down_9|NZ_AP019692.1_1016171_1017230_+	pfam09344, Cas_CT1975, CT1975-like protein
GCF_006741505.1_ASM674150v1	NZ_AP019692	Salmonella enterica subsp. enterica serovar Senftenberg strain SL180013	3	1019967-1022012	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	32,33,33	33	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|245aa|up_9|NZ_AP019692.1_1008653_1009388_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_AP019692.1_1009600_1010554_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|up_7|NZ_AP019692.1_1010937_1013637_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|up_6|NZ_AP019692.1_1013994_1015530_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|NZ_AP019692.1_1015546_1016149_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|up_4|NZ_AP019692.1_1016171_1017230_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|NZ_AP019692.1_1017239_1017965_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|NZ_AP019692.1_1017964_1018669_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|NZ_AP019692.1_1018668_1019586_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_AP019692.1_1019588_1019882_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_AP019692.1_1022026_1023073_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_AP019692.1_1023323_1024232_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_AP019692.1_1024241_1025681_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_AP019692.1_1025667_1026273_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_AP019692.1_1026323_1026647_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_AP019692.1_1026837_1027149_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_AP019692.1_1027167_1027878_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_AP019692.1_1027877_1028357_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_AP019692.1_1028353_1029403_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_AP019692.1_1029383_1030145_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
