assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006740705.1_ASM674070v1	NZ_CP035485	Salicibibacter halophilus strain NKC3-5 chromosome, complete genome	1	1042743-1042819	1	CRISPRCasFinder	no		RT,DinG,cas3,DEDDh,csa3,cas14j,WYL,cas9,cas1,cas2	Orphan	CTTGATCGTACCCCTCGATGCAGAT	25	0	0	NA	NA	NA	1	1	Orphan	RT,DinG,cas3,DEDDh,csa3,cas14j,WYL,cas9,cas1,cas2	NA|73aa|up_8|NZ_CP035485.1_1034812_1035031_-,NA|121aa|up_2|NZ_CP035485.1_1041016_1041379_-,NA|137aa|down_0|NZ_CP035485.1_1042903_1043314_-	NA|94aa|up_9|NZ_CP035485.1_1034576_1034858_-	pfam09902, DUF2129, Uncharacterized protein conserved in bacteria (DUF2129)	NA|73aa|up_8|NZ_CP035485.1_1034812_1035031_-	NA	NA|365aa|up_7|NZ_CP035485.1_1035405_1036500_+	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|420aa|up_6|NZ_CP035485.1_1036492_1037752_+	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional	NA|278aa|up_5|NZ_CP035485.1_1037748_1038582_+	PRK07679, PRK07679, pyrroline-5-carboxylate reductase; Reviewed	NA|267aa|up_4|NZ_CP035485.1_1038724_1039525_+	pfam00520, Ion_trans, Ion transport protein	NA|457aa|up_3|NZ_CP035485.1_1039574_1040945_-	PRK09034, PRK09034, aspartate kinase; Reviewed	NA|121aa|up_2|NZ_CP035485.1_1041016_1041379_-	NA	NA|146aa|up_1|NZ_CP035485.1_1041673_1042111_+	cd04643, CBS_pair_bac, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria	NA|147aa|up_0|NZ_CP035485.1_1042157_1042598_-	COG3679, COG3679, Regulatory protein involved in competence development and sporulation [Replication, recombination and repair;    Signal transduction mechanisms]	NA|137aa|down_0|NZ_CP035485.1_1042903_1043314_-	NA	NA|76aa|down_1|NZ_CP035485.1_1043366_1043594_-	pfam14003, YlbE, YlbE-like protein	NA|145aa|down_2|NZ_CP035485.1_1043664_1044099_-	pfam14071, YlbD_coat, Putative coat protein	NA|119aa|down_3|NZ_CP035485.1_1044265_1044622_+	pfam08868, YugN, YugN-like family	NA|183aa|down_4|NZ_CP035485.1_1044683_1045232_-	COG2322, COG2322, Predicted membrane protein [Function unknown]	NA|115aa|down_5|NZ_CP035485.1_1045365_1045710_-	TIGR02908, Cytochrome_c_oxidase_subunit_4B, cytochrome c oxidase, subunit IVB	NA|206aa|down_6|NZ_CP035485.1_1045716_1046334_-	cd02863, Ubiquinol_oxidase_III, Ubiquinol oxidase subunit III subfamily	NA|624aa|down_7|NZ_CP035485.1_1046337_1048209_-	cd01662, Ubiquinol_Oxidase_I, Ubiquinol oxidase subunit I	NA|371aa|down_8|NZ_CP035485.1_1048239_1049352_-	TIGR02866, Heme-copper_oxidase_subunit_2, cytochrome c oxidase, subunit II	NA|312aa|down_9|NZ_CP035485.1_1049472_1050408_-	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional
GCF_006740705.1_ASM674070v1	NZ_CP035485	Salicibibacter halophilus strain NKC3-5 chromosome, complete genome	2	1080760-1080835	2	CRISPRCasFinder	no	DEDDh	RT,DinG,cas3,DEDDh,csa3,cas14j,WYL,cas9,cas1,cas2	Unclear	CAACGCACCCCGATTTCGTGTTCC	24	0	0	NA	NA	NA	1	1	Orphan	RT,DinG,cas3,DEDDh,csa3,cas14j,WYL,cas9,cas1,cas2	NA,NA|90aa|down_5|NZ_CP035485.1_1086155_1086425_-,NA|60aa|down_7|NZ_CP035485.1_1087404_1087584_+	NA|357aa|up_9|NZ_CP035485.1_1071382_1072453_-	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|215aa|up_8|NZ_CP035485.1_1072780_1073425_-	pfam10368, YkyA, Putative cell-wall binding lipoprotein	NA|41aa|up_7|NZ_CP035485.1_1073650_1073773_+	pfam09680, Tiny_TM_bacill, Protein of unknown function (Tiny_TM_bacill)	NA|182aa|up_6|NZ_CP035485.1_1074002_1074548_+	PRK00150, def, peptide deformylase; Reviewed	NA|257aa|up_5|NZ_CP035485.1_1074635_1075406_-	cd07517, HAD_HPP, phosphatase, similar to Bacteroides thetaiotaomicron VPI-5482 BT4131 hexose phosphate phosphatase; belongs to the haloacid dehalogenase-like superfamily	NA|70aa|up_4|NZ_CP035485.1_1076013_1076223_+	pfam07288, DUF1447, Protein of unknown function (DUF1447)	NA|556aa|up_3|NZ_CP035485.1_1076223_1077891_+	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|287aa|up_2|NZ_CP035485.1_1078063_1078924_+	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|95aa|up_1|NZ_CP035485.1_1079279_1079564_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|296aa|up_0|NZ_CP035485.1_1079560_1080448_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|237aa|down_0|NZ_CP035485.1_1080922_1081633_-	cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins	NA|375aa|down_1|NZ_CP035485.1_1081629_1082754_-	cd05670, M20_Acy1_YkuR-like, M20 Peptidase aminoacyclase-1 YkuR-like proteins, including YkuR and Ama/HipO/HyuC proteins	NA|241aa|down_2|NZ_CP035485.1_1083009_1083732_-	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA|369aa|down_3|NZ_CP035485.1_1083807_1084914_-	pfam00924, MS_channel, Mechanosensitive ion channel	NA|265aa|down_4|NZ_CP035485.1_1085108_1085903_-	pfam13427, DUF4111, Domain of unknown function (DUF4111)	NA|90aa|down_5|NZ_CP035485.1_1086155_1086425_-	NA	NA|258aa|down_6|NZ_CP035485.1_1086607_1087381_+	pfam13185, GAF_2, GAF domain	NA|60aa|down_7|NZ_CP035485.1_1087404_1087584_+	NA	NA|205aa|down_8|NZ_CP035485.1_1087639_1088254_-	COG3601, COG3601, Predicted membrane protein [Function unknown]	NA|174aa|down_9|NZ_CP035485.1_1088703_1089225_-	COG1878, COG1878, Kynurenine formamidase [Amino acid transport and metabolism]
GCF_006740705.1_ASM674070v1	NZ_CP035485	Salicibibacter halophilus strain NKC3-5 chromosome, complete genome	3	2034308-2034385	3	CRISPRCasFinder	no		RT,DinG,cas3,DEDDh,csa3,cas14j,WYL,cas9,cas1,cas2	Orphan	TTTTTGCCGTTTCGGGGTGCGTTGG	25	1	1	2034333-2034360	NZ_CP035485.1_2018423-2018396	NA	1	1	Orphan	RT,DinG,cas3,DEDDh,csa3,cas14j,WYL,cas9,cas1,cas2	NA|176aa|up_6|NZ_CP035485.1_2027301_2027829_-,NA|70aa|down_6|NZ_CP035485.1_2043422_2043632_-,NA|61aa|down_7|NZ_CP035485.1_2043600_2043783_-	NA|555aa|up_9|NZ_CP035485.1_2024364_2026029_+	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|268aa|up_8|NZ_CP035485.1_2026154_2026958_+	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|95aa|up_7|NZ_CP035485.1_2027006_2027291_+	pfam12732, YtxH, YtxH-like protein	NA|176aa|up_6|NZ_CP035485.1_2027301_2027829_-	NA	NA|430aa|up_5|NZ_CP035485.1_2028207_2029497_+	TIGR01814, kynureninase, kynureninase	NA|236aa|up_4|NZ_CP035485.1_2029468_2030176_+	TIGR03035, trp_arylform, arylformamidase	NA|280aa|up_3|NZ_CP035485.1_2030150_2030990_+	TIGR03036, trp_2_3_diox, tryptophan 2,3-dioxygenase	NA|483aa|up_2|NZ_CP035485.1_2031127_2032576_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|95aa|up_1|NZ_CP035485.1_2032795_2033080_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|296aa|up_0|NZ_CP035485.1_2033076_2033964_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|334aa|down_0|NZ_CP035485.1_2034464_2035466_-	pfam08378, NERD, Nuclease-related domain	NA|555aa|down_1|NZ_CP035485.1_2035558_2037223_-	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|385aa|down_2|NZ_CP035485.1_2037300_2038455_-	cd02932, OYE_YqiM_FMN, Old yellow enzyme (OYE) YqjM-like FMN binding domain	NA|307aa|down_3|NZ_CP035485.1_2040423_2041344_-	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|252aa|down_4|NZ_CP035485.1_2041340_2042096_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|274aa|down_5|NZ_CP035485.1_2042561_2043383_-	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B	NA|70aa|down_6|NZ_CP035485.1_2043422_2043632_-	NA	NA|61aa|down_7|NZ_CP035485.1_2043600_2043783_-	NA	NA|73aa|down_8|NZ_CP035485.1_2043718_2043937_-	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism]	NA|301aa|down_9|NZ_CP035485.1_2043989_2044892_+	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
GCF_006740705.1_ASM674070v1	NZ_CP035485	Salicibibacter halophilus strain NKC3-5 chromosome, complete genome	4	2711966-2712066	4	CRISPRCasFinder	no		RT,DinG,cas3,DEDDh,csa3,cas14j,WYL,cas9,cas1,cas2	Orphan	AAAACCATGCAACAACCTTACACCA	25	0	0	NA	NA	NA	1	1	Orphan	RT,DinG,cas3,DEDDh,csa3,cas14j,WYL,cas9,cas1,cas2	NA|157aa|up_8|NZ_CP035485.1_2701045_2701516_+,NA|95aa|up_5|NZ_CP035485.1_2705930_2706215_+,NA|212aa|up_3|NZ_CP035485.1_2706586_2707222_+,NA|203aa|up_1|NZ_CP035485.1_2710504_2711113_+,NA|85aa|down_0|NZ_CP035485.1_2712264_2712519_+,NA|148aa|down_2|NZ_CP035485.1_2713700_2714144_+,NA|96aa|down_3|NZ_CP035485.1_2714411_2714699_+	NA|370aa|up_9|NZ_CP035485.1_2699921_2701031_+	TIGR01917, subunit_of_Protein_B_sticklandii, glycine reductase, selenoprotein B	NA|157aa|up_8|NZ_CP035485.1_2701045_2701516_+	NA	NA|855aa|up_7|NZ_CP035485.1_2701539_2704104_+	pfam12696, TraG-D_C, TraM recognition site of TraD and TraG	NA|548aa|up_6|NZ_CP035485.1_2704341_2705985_+	pfam15240, Pro-rich, Proline-rich	NA|95aa|up_5|NZ_CP035485.1_2705930_2706215_+	NA	NA|103aa|up_4|NZ_CP035485.1_2706281_2706590_+	pfam17332, pXO2-11, Uncharacterized protein pXO2-11	NA|212aa|up_3|NZ_CP035485.1_2706586_2707222_+	NA	NA|643aa|up_2|NZ_CP035485.1_2707242_2709171_+	TIGR02746, hypothetical_protein, type-IV secretion system protein TraC	NA|203aa|up_1|NZ_CP035485.1_2710504_2711113_+	NA	NA|284aa|up_0|NZ_CP035485.1_2711109_2711961_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|85aa|down_0|NZ_CP035485.1_2712264_2712519_+	NA	NA|393aa|down_1|NZ_CP035485.1_2712515_2713694_+	pfam18555, MobL, MobL relaxases	NA|148aa|down_2|NZ_CP035485.1_2713700_2714144_+	NA	NA|96aa|down_3|NZ_CP035485.1_2714411_2714699_+	NA	NA|611aa|down_4|NZ_CP035485.1_2714676_2716509_+	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|327aa|down_5|NZ_CP035485.1_2716586_2717567_+	pfam13155, Toprim_2, Toprim-like	NA|228aa|down_6|NZ_CP035485.1_2717632_2718316_+	pfam04471, Mrr_cat, Restriction endonuclease	NA|354aa|down_7|NZ_CP035485.1_2719199_2720261_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|582aa|down_8|NZ_CP035485.1_2720503_2722249_-	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|175aa|down_9|NZ_CP035485.1_2722440_2722965_-	pfam14026, DUF4242, Protein of unknown function (DUF4242)
GCF_006740705.1_ASM674070v1	NZ_CP035485	Salicibibacter halophilus strain NKC3-5 chromosome, complete genome	5	2971432-2972523	1,5,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2	RT,DinG,cas3,DEDDh,csa3,cas14j,WYL,cas9,cas1,cas2	 or Type II-C?, Type II-B,Type II-B,Type II-C,Type II-A	GTTTTAGCACTCTGCAGTTTTAGGTAGGTATGAGAC,GTTTTAGCACTCTGCAGTTTTAGGTAGGTATGAGAC,GTTTTAGCACTCTGCAGTTTTAGGTAGGTATGAGAC	36,36,36	0	0	NA	NA	NA:NA:NA	15,16,16	16	orTypeII-C?,TypeII-B,TypeII-B,TypeII-C,TypeII-A	RT,DinG,cas3,DEDDh,csa3,cas14j,WYL,cas9,cas1,cas2	NA|110aa|up_6|NZ_CP035485.1_2965867_2966197_+,NA|335aa|up_0|NZ_CP035485.1_2970410_2971415_+,NA|244aa|down_9|NZ_CP035485.1_2981934_2982666_-	cas9|155aa|up_9|NZ_CP035485.1_2961996_2962461_+	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	NA|416aa|up_8|NZ_CP035485.1_2962601_2963849_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas9|612aa|up_7|NZ_CP035485.1_2963963_2965799_+	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	NA|110aa|up_6|NZ_CP035485.1_2965867_2966197_+	NA	NA|118aa|up_5|NZ_CP035485.1_2966190_2966544_+	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|526aa|up_4|NZ_CP035485.1_2966611_2968189_+	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|282aa|up_3|NZ_CP035485.1_2968321_2969167_+	pfam18061, CRISPR_Cas9_WED, CRISPR-Cas9 WED domain	cas1|300aa|up_2|NZ_CP035485.1_2969178_2970078_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|98aa|up_1|NZ_CP035485.1_2970097_2970391_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|335aa|up_0|NZ_CP035485.1_2970410_2971415_+	NA	NA|217aa|down_0|NZ_CP035485.1_2972574_2973225_-	cd01987, USP_OKCHK, USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family	NA|315aa|down_1|NZ_CP035485.1_2973382_2974327_+	PRK09379, PRK09379, LytR family transcriptional regulator	NA|638aa|down_2|NZ_CP035485.1_2974347_2976261_-	pfam02687, FtsX, FtsX-like permease family	NA|260aa|down_3|NZ_CP035485.1_2976235_2977015_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|355aa|down_4|NZ_CP035485.1_2977119_2978184_-	cd16948, HATPase_BceS-YxdK-YvcQ-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Bacillus subtilis BceS, YxdK, and Bacillus thuringiensis YvcQ	NA|238aa|down_5|NZ_CP035485.1_2978180_2978894_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|205aa|down_6|NZ_CP035485.1_2979441_2980056_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|354aa|down_7|NZ_CP035485.1_2980052_2981114_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|229aa|down_8|NZ_CP035485.1_2981251_2981938_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|244aa|down_9|NZ_CP035485.1_2981934_2982666_-	NA
GCF_006740705.1_ASM674070v1	NZ_CP035485	Salicibibacter halophilus strain NKC3-5 chromosome, complete genome	6	3544685-3544760	6	CRISPRCasFinder	no		RT,DinG,cas3,DEDDh,csa3,cas14j,WYL,cas9,cas1,cas2	Orphan	TTTTGGGGTACGATTTCTTTTTTA	24	0	0	NA	NA	NA	1	1	Orphan	RT,DinG,cas3,DEDDh,csa3,cas14j,WYL,cas9,cas1,cas2	NA|55aa|up_6|NZ_CP035485.1_3537754_3537919_-,NA|134aa|up_5|NZ_CP035485.1_3538174_3538576_+,NA|116aa|down_4|NZ_CP035485.1_3548319_3548667_-,NA|222aa|down_6|NZ_CP035485.1_3549454_3550120_+	NA|178aa|up_9|NZ_CP035485.1_3535823_3536357_+	pfam01625, PMSR, Peptide methionine sulfoxide reductase	NA|148aa|up_8|NZ_CP035485.1_3536357_3536801_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|290aa|up_7|NZ_CP035485.1_3536867_3537737_+	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|55aa|up_6|NZ_CP035485.1_3537754_3537919_-	NA	NA|134aa|up_5|NZ_CP035485.1_3538174_3538576_+	NA	NA|262aa|up_4|NZ_CP035485.1_3538653_3539439_+	pfam18846, baeRF_family5, Bacterial archaeo-eukaryotic release factor family 5	NA|272aa|up_3|NZ_CP035485.1_3539493_3540309_-	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|466aa|up_2|NZ_CP035485.1_3540407_3541805_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|600aa|up_1|NZ_CP035485.1_3541895_3543695_-	PRK09633, ligD, DNA ligase D	NA|279aa|up_0|NZ_CP035485.1_3543811_3544648_+	cd00789, KU_like, Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku	NA|129aa|down_0|NZ_CP035485.1_3544919_3545306_+	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]	NA|264aa|down_1|NZ_CP035485.1_3545431_3546223_+	pfam14167, YfkD, YfkD-like protein	NA|373aa|down_2|NZ_CP035485.1_3546246_3547365_-	TIGR04478, radical_SAM_superfamily_domain_protein, radical SAM/CxCxxxxC motif protein YfkAB	NA|251aa|down_3|NZ_CP035485.1_3547573_3548326_+	TIGR02884, spore_pdaA, delta-lactam-biosynthetic de-N-acetylase	NA|116aa|down_4|NZ_CP035485.1_3548319_3548667_-	NA	NA|170aa|down_5|NZ_CP035485.1_3548855_3549365_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|222aa|down_6|NZ_CP035485.1_3549454_3550120_+	NA	NA|129aa|down_7|NZ_CP035485.1_3550173_3550560_-	PRK13290, ectC, L-ectoine synthase; Reviewed	NA|423aa|down_8|NZ_CP035485.1_3550678_3551947_-	PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate transaminase	NA|170aa|down_9|NZ_CP035485.1_3552003_3552513_-	TIGR02406, L-24-diaminobutyric_acid_acetyltransferase, diaminobutyrate acetyltransferase
