assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006517075.1_ASM651707v1	NZ_CP041181	Salmonella enterica subsp. enterica serovar Indiana strain SJTUF13520v2 isolate food chromosome, complete genome	1	585192-585292	1	CRISPRCasFinder	no		cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Orphan	GCTTCAGTGGCGAGCGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	NA,NA|177aa|down_1|NZ_CP041181.1_586810_587341_-	NA|448aa|up_9|NZ_CP041181.1_571269_572613_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_CP041181.1_573240_573693_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_CP041181.1_573720_575223_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_CP041181.1_575247_577926_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_CP041181.1_578147_578549_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP041181.1_578548_579493_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP041181.1_579643_579913_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP041181.1_580154_582290_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP041181.1_582399_583284_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP041181.1_583389_583470_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_CP041181.1_585505_586750_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|177aa|down_1|NZ_CP041181.1_586810_587341_-	NA	NA|240aa|down_2|NZ_CP041181.1_587499_588219_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|336aa|down_3|NZ_CP041181.1_588196_589204_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|down_4|NZ_CP041181.1_589381_590278_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_5|NZ_CP041181.1_590268_591264_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_6|NZ_CP041181.1_591480_592005_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_7|NZ_CP041181.1_591998_592502_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_8|NZ_CP041181.1_592488_592806_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_9|NZ_CP041181.1_592843_593287_+	PRK03467, PRK03467, hypothetical protein; Provisional
GCF_006517075.1_ASM651707v1	NZ_CP041181	Salmonella enterica subsp. enterica serovar Indiana strain SJTUF13520v2 isolate food chromosome, complete genome	2	960508-961574	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	16,17,17	17	TypeI-E	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	NA,NA	NA|179aa|up_9|NZ_CP041181.1_949051_949588_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|NZ_CP041181.1_949584_950055_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|NZ_CP041181.1_950069_950576_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|NZ_CP041181.1_950595_951369_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|NZ_CP041181.1_951381_954081_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|NZ_CP041181.1_954160_954748_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|NZ_CP041181.1_955357_956158_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP041181.1_956385_958023_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP041181.1_958105_959404_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP041181.1_959539_960211_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP041181.1_961671_962469_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP041181.1_962556_962919_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP041181.1_963342_965142_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP041181.1_965141_966854_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP041181.1_966929_967664_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP041181.1_967751_968705_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_6|NZ_CP041181.1_969085_971785_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|down_7|NZ_CP041181.1_972142_973678_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|down_8|NZ_CP041181.1_973694_974297_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|down_9|NZ_CP041181.1_974319_975378_+	pfam09344, Cas_CT1975, CT1975-like protein
GCF_006517075.1_ASM651707v1	NZ_CP041181	Salmonella enterica subsp. enterica serovar Indiana strain SJTUF13520v2 isolate food chromosome, complete genome	3	978115-979180	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	17,17,17	17	TypeI-E	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	NA,NA	NA|245aa|up_9|NZ_CP041181.1_966929_967664_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP041181.1_967751_968705_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|up_7|NZ_CP041181.1_969085_971785_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|up_6|NZ_CP041181.1_972142_973678_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|NZ_CP041181.1_973694_974297_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|up_4|NZ_CP041181.1_974319_975378_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|NZ_CP041181.1_975387_976113_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|NZ_CP041181.1_976112_976817_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|NZ_CP041181.1_976816_977734_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP041181.1_977736_978030_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP041181.1_979194_980241_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP041181.1_980491_981400_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP041181.1_981409_982849_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP041181.1_982835_983441_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP041181.1_983491_983815_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP041181.1_984005_984317_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP041181.1_984335_985046_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP041181.1_985045_985525_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP041181.1_985521_986571_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP041181.1_986551_987313_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
