assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006385095.1_ASM638509v1	NZ_CP041029	Riemerella anatipestifer strain WJ4 chromosome, complete genome	1	326675-326745	1	CRISPRCasFinder	no	csa3	csa3,cas3,RT,DEDDh,cas2,cas1,cas9,WYL	Type I-A	AAGGTTTAAAGTTCAAATATTCAAGG	26	1	1	326701-326719	NZ_CP041029.1_1273106-1273088	NA	1	1	Orphan	csa3,cas3,RT,DEDDh,cas2,cas1,cas9,WYL	NA|130aa|up_7|NZ_CP041029.1_320128_320518_+,NA|157aa|up_5|NZ_CP041029.1_321126_321597_+,NA|133aa|down_5|NZ_CP041029.1_338330_338729_+,NA|72aa|down_7|NZ_CP041029.1_340857_341073_+,NA|85aa|down_8|NZ_CP041029.1_341298_341553_+	NA|208aa|up_9|NZ_CP041029.1_319050_319674_+	pfam13568, OMP_b-brl_2, Outer membrane protein beta-barrel domain	NA|142aa|up_8|NZ_CP041029.1_319681_320107_+	pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid attachment site	NA|130aa|up_7|NZ_CP041029.1_320128_320518_+	NA	csa3|111aa|up_6|NZ_CP041029.1_320738_321071_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|157aa|up_5|NZ_CP041029.1_321126_321597_+	NA	NA|206aa|up_4|NZ_CP041029.1_321616_322234_+	cd16345, LMWP_ArsC, Arsenate reductase of the LMWP family	NA|455aa|up_3|NZ_CP041029.1_322309_323674_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|232aa|up_2|NZ_CP041029.1_323740_324436_-	cd18092, SpoU-like_TrmH, SAM-dependent tRNA methylase related to TrmH	NA|282aa|up_1|NZ_CP041029.1_324432_325278_-	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	NA|253aa|up_0|NZ_CP041029.1_325277_326036_-	PRK02101, PRK02101, peroxide stress protein YaaA	NA|128aa|down_0|NZ_CP041029.1_328879_329263_+	pfam18291, HU-HIG, HU domain fused to wHTH, Ig, or Glycine-rich motif	NA|505aa|down_1|NZ_CP041029.1_330219_331734_-	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|942aa|down_2|NZ_CP041029.1_331771_334597_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|315aa|down_3|NZ_CP041029.1_334720_335665_-	cd03407, SPFH_like_u4, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|594aa|down_4|NZ_CP041029.1_335992_337774_+	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	NA|133aa|down_5|NZ_CP041029.1_338330_338729_+	NA	NA|698aa|down_6|NZ_CP041029.1_338745_340839_+	COG5545, COG5545, Predicted P-loop ATPase and inactivated derivatives [General function prediction only]	NA|72aa|down_7|NZ_CP041029.1_340857_341073_+	NA	NA|85aa|down_8|NZ_CP041029.1_341298_341553_+	NA	NA|503aa|down_9|NZ_CP041029.1_341557_343066_+	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD
GCF_006385095.1_ASM638509v1	NZ_CP041029	Riemerella anatipestifer strain WJ4 chromosome, complete genome	2	971960-972775	2,1	CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas9	csa3,cas3,RT,DEDDh,cas2,cas1,cas9,WYL	 Type II-B,Type II-C, or Type II-C?,Type II-A,Type II-B	GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC,GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC	47,47	0	0	NA	NA	NA:NA	10,9	10	TypeII-B,TypeII-C,orTypeII-C?,TypeII-A,TypeII-B	csa3,cas3,RT,DEDDh,cas2,cas1,cas9,WYL	NA|468aa|up_1|NZ_CP041029.1_969755_971159_+,NA|90aa|up_0|NZ_CP041029.1_971508_971778_+,NA	NA|361aa|up_9|NZ_CP041029.1_955625_956708_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|257aa|up_8|NZ_CP041029.1_956793_957564_-	PRK07570, PRK07570, succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated	NA|671aa|up_7|NZ_CP041029.1_957587_959600_-	PRK07573, sdhA, fumarate reductase/succinate dehydrogenase flavoprotein subunit	NA|223aa|up_6|NZ_CP041029.1_959662_960331_-	cd03498, SQR_TypeB_2_TM, Succinate:quinone oxidoreductase (SQR)-like Type B subfamily 2, transmembrane subunit; composed of proteins with similarity to the SQRs of Geobacter metallireducens and Corynebacterium glutamicum	NA|603aa|up_5|NZ_CP041029.1_960455_962264_-	pfam03772, Competence, Competence protein	NA|543aa|up_4|NZ_CP041029.1_962740_964369_-	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain	NA|398aa|up_3|NZ_CP041029.1_964475_965669_-	cd10283, MnuA_DNase1-like, Mycoplasma pulmonis MnuA nuclease-like	NA|936aa|up_2|NZ_CP041029.1_966922_969730_+	cd11308, Peptidase_M14NE-CP-C_like, Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain	NA|468aa|up_1|NZ_CP041029.1_969755_971159_+	NA	NA|90aa|up_0|NZ_CP041029.1_971508_971778_+	NA	cas2|113aa|down_0|NZ_CP041029.1_972882_973221_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|300aa|down_1|NZ_CP041029.1_973210_974110_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1406aa|down_2|NZ_CP041029.1_974122_978340_-	pfam18541, RuvC_III, RuvC endonuclease subdomain 3	NA|312aa|down_3|NZ_CP041029.1_978851_979787_+	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites	NA|110aa|down_4|NZ_CP041029.1_979833_980163_-	PTZ00490, PTZ00490, Ferredoxin superfamily; Provisional	NA|351aa|down_5|NZ_CP041029.1_980168_981221_-	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|249aa|down_6|NZ_CP041029.1_981379_982126_+	pfam11306, DUF3108, Protein of unknown function (DUF3108)	NA|167aa|down_7|NZ_CP041029.1_982155_982656_+	pfam10652, DUF2480, Protein of unknown function (DUF2480)	NA|222aa|down_8|NZ_CP041029.1_982703_983369_+	pfam06078, DUF937, Bacterial protein of unknown function (DUF937)	NA|325aa|down_9|NZ_CP041029.1_983519_984494_+	pfam01916, DS, Deoxyhypusine synthase
