assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006351985.2_ASM635198v2	NZ_CP038030	Rhodococcus ruber strain R1 chromosome, complete genome	1	132452-132527	1	CRISPRCasFinder	no		c2c9_V-U4,Cas9_archaeal,csa3,cas3,WYL,DEDDh,DinG,cas4	Orphan	GGCACTCAAGGGCCCGCGAGTAGAA	25	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,Cas9_archaeal,csa3,cas3,WYL,DEDDh,DinG,cas4,RT	NA|153aa|up_8|NZ_CP038030.2_119239_119698_-,NA|221aa|up_6|NZ_CP038030.2_121535_122198_-,NA|585aa|up_5|NZ_CP038030.2_122636_124391_+,NA|235aa|up_4|NZ_CP038030.2_124491_125196_+,NA|298aa|up_2|NZ_CP038030.2_127295_128189_+,NA|216aa|up_0|NZ_CP038030.2_130485_131133_-,NA|121aa|down_7|NZ_CP038030.2_140127_140490_+,NA|88aa|down_9|NZ_CP038030.2_141489_141753_+	NA|379aa|up_9|NZ_CP038030.2_117997_119134_+	COG1112, COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]	NA|153aa|up_8|NZ_CP038030.2_119239_119698_-	NA	NA|243aa|up_7|NZ_CP038030.2_120056_120785_-	pfam00571, CBS, CBS domain	NA|221aa|up_6|NZ_CP038030.2_121535_122198_-	NA	NA|585aa|up_5|NZ_CP038030.2_122636_124391_+	NA	NA|235aa|up_4|NZ_CP038030.2_124491_125196_+	NA	NA|472aa|up_3|NZ_CP038030.2_125742_127158_+	cd00719, GIY-YIG_SF, GIY-YIG nuclease domain superfamily	NA|298aa|up_2|NZ_CP038030.2_127295_128189_+	NA	NA|366aa|up_1|NZ_CP038030.2_128448_129546_+	pfam04471, Mrr_cat, Restriction endonuclease	NA|216aa|up_0|NZ_CP038030.2_130485_131133_-	NA	NA|163aa|down_0|NZ_CP038030.2_133447_133936_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|260aa|down_1|NZ_CP038030.2_133937_134717_-	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|445aa|down_2|NZ_CP038030.2_134736_136071_-	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|487aa|down_3|NZ_CP038030.2_136116_137577_-	TIGR01813, Fumarate_reductase_flavoprotein_subunit, flavocytochrome c	NA|280aa|down_4|NZ_CP038030.2_137706_138546_-	PRK07231, FabG-like, SDR family oxidoreductase	NA|144aa|down_5|NZ_CP038030.2_138603_139035_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|248aa|down_6|NZ_CP038030.2_139130_139874_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|121aa|down_7|NZ_CP038030.2_140127_140490_+	NA	NA|86aa|down_8|NZ_CP038030.2_140443_140701_-	pfam01527, HTH_Tnp_1, Transposase	NA|88aa|down_9|NZ_CP038030.2_141489_141753_+	NA
GCF_006351985.2_ASM635198v2	NZ_CP038030	Rhodococcus ruber strain R1 chromosome, complete genome	2	3083055-3083131	2	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,Cas9_archaeal,csa3,cas3,WYL,DEDDh,DinG,cas4	Unclear	CCGCCGAGTCCGCCGCCGCGATC	23	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,Cas9_archaeal,csa3,cas3,WYL,DEDDh,DinG,cas4,RT	NA|136aa|up_7|NZ_CP038030.2_3073844_3074252_-,NA|72aa|down_2|NZ_CP038030.2_3086353_3086569_-	NA|92aa|up_9|NZ_CP038030.2_3072375_3072651_+	pfam01037, AsnC_trans_reg, Lrp/AsnC ligand binding domain	NA|349aa|up_8|NZ_CP038030.2_3072705_3073752_-	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|136aa|up_7|NZ_CP038030.2_3073844_3074252_-	NA	NA|204aa|up_6|NZ_CP038030.2_3074428_3075040_+	COG1845, CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Energy production and conversion]	NA|278aa|up_5|NZ_CP038030.2_3075139_3075973_+	COG2010, CccA, Cytochrome c, mono- and diheme variants [Energy production and conversion]	NA|376aa|up_4|NZ_CP038030.2_3075969_3077097_+	COG0723, QcrA, Rieske Fe-S protein [Energy production and conversion]	NA|550aa|up_3|NZ_CP038030.2_3077093_3078743_+	pfam13631, Cytochrom_B_N_2, Cytochrome b(N-terminal)/b6/petB	NA|292aa|up_2|NZ_CP038030.2_3078881_3079757_-	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)	NA|139aa|up_1|NZ_CP038030.2_3080338_3080755_-	pfam12270, Cyt_c_ox_IV, Cytochrome c oxidase subunit IV	NA|355aa|up_0|NZ_CP038030.2_3080786_3081851_-	COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]	NA|117aa|down_0|NZ_CP038030.2_3085115_3085466_-	COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]	NA|222aa|down_1|NZ_CP038030.2_3085611_3086277_+	pfam11241, DUF3043, Protein of unknown function (DUF3043)	NA|72aa|down_2|NZ_CP038030.2_3086353_3086569_-	NA	NA|368aa|down_3|NZ_CP038030.2_3086703_3087807_+	PRK00105, cobT, nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Reviewed	NA|251aa|down_4|NZ_CP038030.2_3087806_3088559_+	PRK00235, cobS, cobalamin synthase; Reviewed	NA|368aa|down_5|NZ_CP038030.2_3088574_3089678_-	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional	NA|367aa|down_6|NZ_CP038030.2_3089711_3090812_-	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT	NA|503aa|down_7|NZ_CP038030.2_3090886_3092395_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|588aa|down_8|NZ_CP038030.2_3092652_3094416_+	TIGR02927, putative_dihydrolipoamide_acyltransferase, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase	NA|297aa|down_9|NZ_CP038030.2_3094527_3095418_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_006351985.2_ASM635198v2	NZ_CP038030	Rhodococcus ruber strain R1 chromosome, complete genome	3	3610244-3610332	3	CRISPRCasFinder	no		c2c9_V-U4,Cas9_archaeal,csa3,cas3,WYL,DEDDh,DinG,cas4	Orphan	CGGTCGTTGCCCGCGGCGAGGGC	23	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,Cas9_archaeal,csa3,cas3,WYL,DEDDh,DinG,cas4,RT	NA,NA|116aa|down_7|NZ_CP038030.2_3690814_3691162_-	NA|102aa|up_9|NZ_CP038030.2_3594244_3594550_-	PRK05738, rplW, 50S ribosomal protein L23; Reviewed	NA|228aa|up_8|NZ_CP038030.2_3594546_3595230_-	PRK05319, rplD, 50S ribosomal protein L4; Provisional	NA|218aa|up_7|NZ_CP038030.2_3595226_3595880_-	PRK00001, rplC, 50S ribosomal protein L3; Validated	NA|102aa|up_6|NZ_CP038030.2_3595925_3596231_-	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed	NA|505aa|up_5|NZ_CP038030.2_3596666_3598181_-	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|232aa|up_4|NZ_CP038030.2_3598473_3599169_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|334aa|up_3|NZ_CP038030.2_3599300_3600302_+	TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit	NA|284aa|up_2|NZ_CP038030.2_3600298_3601150_+	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|286aa|up_1|NZ_CP038030.2_3601157_3602015_+	TIGR01248, drrC, daunorubicin resistance protein C	NA|343aa|up_0|NZ_CP038030.2_3603202_3604231_-	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|1952aa|down_0|NZ_CP038030.2_3613699_3619555_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|4032aa|down_1|NZ_CP038030.2_3620093_3632189_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|2467aa|down_2|NZ_CP038030.2_3632405_3639806_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|7446aa|down_3|NZ_CP038030.2_3640012_3662350_-	PRK12316, PRK12316, peptide synthase; Provisional	NA|2425aa|down_4|NZ_CP038030.2_3662286_3669561_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|3951aa|down_5|NZ_CP038030.2_3669704_3681557_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|2612aa|down_6|NZ_CP038030.2_3682690_3690526_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|116aa|down_7|NZ_CP038030.2_3690814_3691162_-	NA	NA|654aa|down_8|NZ_CP038030.2_3691239_3693201_-	PRK03584, PRK03584, acetoacetate--CoA ligase	NA|162aa|down_9|NZ_CP038030.2_3694043_3694529_-	cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes
GCF_006351985.2_ASM635198v2	NZ_CP038030	Rhodococcus ruber strain R1 chromosome, complete genome	4	5090979-5091075	4	CRISPRCasFinder	no		c2c9_V-U4,Cas9_archaeal,csa3,cas3,WYL,DEDDh,DinG,cas4	Orphan	GCGCGGTTCAGCCGGCGCGCACAGCGCGGT	30	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,Cas9_archaeal,csa3,cas3,WYL,DEDDh,DinG,cas4,RT	NA,NA	NA|247aa|up_9|NZ_CP038030.2_5085136_5085877_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|207aa|up_8|NZ_CP038030.2_5085958_5086579_+	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|235aa|up_7|NZ_CP038030.2_5086587_5087292_+	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|252aa|up_6|NZ_CP038030.2_5087288_5088044_+	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|66aa|up_5|NZ_CP038030.2_5088179_5088377_+	pfam04324, Fer2_BFD, BFD-like [2Fe-2S] binding domain	NA|159aa|up_4|NZ_CP038030.2_5088423_5088900_+	cd00907, Bacterioferritin, Bacterioferritin, ferritin-like diiron-binding domain	NA|155aa|up_3|NZ_CP038030.2_5088896_5089361_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|154aa|up_2|NZ_CP038030.2_5089405_5089867_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|97aa|up_1|NZ_CP038030.2_5089884_5090175_+	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase	NA|260aa|up_0|NZ_CP038030.2_5090198_5090978_+	TIGR03704, PrmC_rel_meth, putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific	NA|174aa|down_0|NZ_CP038030.2_5091825_5092347_+	pfam09350, DUF1992, Domain of unknown function (DUF1992)	NA|303aa|down_1|NZ_CP038030.2_5092580_5093489_+	cd07750, PolyPPase_VTC_like, Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, -3 and- 4, and similar proteins	NA|226aa|down_2|NZ_CP038030.2_5093531_5094209_+	pfam16316, DUF4956, Domain of unknown function (DUF4956)	NA|482aa|down_3|NZ_CP038030.2_5094304_5095750_+	COG5337, CotH, Spore coat assembly protein [Cell envelope biogenesis, outer membrane]	NA|194aa|down_4|NZ_CP038030.2_5096000_5096582_+	pfam13671, AAA_33, AAA domain	NA|139aa|down_5|NZ_CP038030.2_5096809_5097226_+	PRK09648, PRK09648, RNA polymerase sigma factor ShbA	NA|247aa|down_6|NZ_CP038030.2_5097433_5098174_+	pfam11139, SfLAP, Sap, sulfolipid-1-addressing protein	NA|394aa|down_7|NZ_CP038030.2_5098272_5099454_+	pfam13191, AAA_16, AAA ATPase domain	NA|395aa|down_8|NZ_CP038030.2_5099459_5100644_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|488aa|down_9|NZ_CP038030.2_5100812_5102276_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated
