assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006349345.1_ASM634934v1	NZ_CP040898	Enterococcus faecalis strain HA-1 chromosome, complete genome	1	281282-281355	1	CRISPRCasFinder	no		WYL,DEDDh,csa3,DinG,cas3,cas14j,csn2,cas2,cas1,cas9	Orphan	GTTTTTCTGTTGCTCACCAACTAT	24	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,DinG,cas3,cas14j,csn2,cas2,cas1,cas9	NA|44aa|up_8|NZ_CP040898.1_269540_269672_+,NA|71aa|down_9|NZ_CP040898.1_292362_292575_+	NA|349aa|up_9|NZ_CP040898.1_268424_269471_+	PRK09354, recA, recombinase A; Provisional	NA|44aa|up_8|NZ_CP040898.1_269540_269672_+	NA	NA|519aa|up_7|NZ_CP040898.1_269867_271424_+	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|266aa|up_6|NZ_CP040898.1_271583_272381_+	pfam13277, YmdB, YmdB-like protein	NA|124aa|up_5|NZ_CP040898.1_272468_272840_+	COG4550, COG4550, Predicted membrane protein [Function unknown]	NA|859aa|up_4|NZ_CP040898.1_272840_275417_+	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|711aa|up_3|NZ_CP040898.1_275448_277581_+	COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]	NA|185aa|up_2|NZ_CP040898.1_277605_278160_+	cd00555, Maf, Nucleotide binding protein Maf	NA|146aa|up_1|NZ_CP040898.1_278292_278730_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|324aa|up_0|NZ_CP040898.1_278904_279876_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|217aa|down_0|NZ_CP040898.1_281677_282328_-	TIGR01990, bPGM, beta-phosphoglucomutase	NA|915aa|down_1|NZ_CP040898.1_282342_285087_-	COG1554, ATH1, Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]	NA|238aa|down_2|NZ_CP040898.1_285347_286061_+	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|227aa|down_3|NZ_CP040898.1_286456_287137_+	pfam13731, WxL, WxL domain surface cell wall-binding	NA|236aa|down_4|NZ_CP040898.1_287232_287940_+	pfam13731, WxL, WxL domain surface cell wall-binding	NA|150aa|down_5|NZ_CP040898.1_287980_288430_-	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL	NA|423aa|down_6|NZ_CP040898.1_288638_289907_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|435aa|down_7|NZ_CP040898.1_289899_291204_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|289aa|down_8|NZ_CP040898.1_291371_292238_+	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]	NA|71aa|down_9|NZ_CP040898.1_292362_292575_+	NA
GCF_006349345.1_ASM634934v1	NZ_CP040898	Enterococcus faecalis strain HA-1 chromosome, complete genome	2	1098132-1098242	2	CRISPRCasFinder	no		WYL,DEDDh,csa3,DinG,cas3,cas14j,csn2,cas2,cas1,cas9	Orphan	CGAAGGGCAAGTTGTGTCATTTGCACGAA	29	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,DinG,cas3,cas14j,csn2,cas2,cas1,cas9	NA|97aa|up_4|NZ_CP040898.1_1093861_1094152_+,NA|322aa|up_3|NZ_CP040898.1_1094327_1095293_+,NA|64aa|up_2|NZ_CP040898.1_1095380_1095572_-,NA|69aa|up_0|NZ_CP040898.1_1097505_1097712_-,NA|36aa|down_4|NZ_CP040898.1_1102687_1102795_+	NA|184aa|up_9|NZ_CP040898.1_1086825_1087377_+	PRK13661, PRK13661, ECF-type riboflavin transporter substrate-binding protein	NA|569aa|up_8|NZ_CP040898.1_1087477_1089184_+	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|278aa|up_7|NZ_CP040898.1_1089180_1090014_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|603aa|up_6|NZ_CP040898.1_1090456_1092265_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|427aa|up_5|NZ_CP040898.1_1092533_1093814_+	pfam02388, FemAB, FemAB family	NA|97aa|up_4|NZ_CP040898.1_1093861_1094152_+	NA	NA|322aa|up_3|NZ_CP040898.1_1094327_1095293_+	NA	NA|64aa|up_2|NZ_CP040898.1_1095380_1095572_-	NA	NA|497aa|up_1|NZ_CP040898.1_1095773_1097264_-	pfam14264, Glucos_trans_II, Glucosyl transferase GtrII	NA|69aa|up_0|NZ_CP040898.1_1097505_1097712_-	NA	NA|357aa|down_0|NZ_CP040898.1_1098742_1099813_+	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional	NA|227aa|down_1|NZ_CP040898.1_1099831_1100512_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|278aa|down_2|NZ_CP040898.1_1100531_1101365_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|398aa|down_3|NZ_CP040898.1_1101379_1102573_+	cd08019, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|36aa|down_4|NZ_CP040898.1_1102687_1102795_+	NA	NA|513aa|down_5|NZ_CP040898.1_1102942_1104481_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|309aa|down_6|NZ_CP040898.1_1104535_1105462_-	cd01137, PsaA, Metal binding protein PsaA	NA|290aa|down_7|NZ_CP040898.1_1105448_1106318_-	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|250aa|down_8|NZ_CP040898.1_1106314_1107064_-	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|325aa|down_9|NZ_CP040898.1_1107276_1108251_+	PRK02458, PRK02458, ribose-phosphate pyrophosphokinase; Provisional
GCF_006349345.1_ASM634934v1	NZ_CP040898	Enterococcus faecalis strain HA-1 chromosome, complete genome	3	1117748-1118179	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no		WYL,DEDDh,csa3,DinG,cas3,cas14j,csn2,cas2,cas1,cas9	Orphan	GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC,GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC,GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	5,6,5	6	Orphan	WYL,DEDDh,csa3,DinG,cas3,cas14j,csn2,cas2,cas1,cas9	NA|50aa|up_6|NZ_CP040898.1_1111371_1111521_+,NA|33aa|down_0|NZ_CP040898.1_1118327_1118426_+,NA|44aa|down_8|NZ_CP040898.1_1127918_1128050_+	NA|382aa|up_9|NZ_CP040898.1_1108407_1109553_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|115aa|up_8|NZ_CP040898.1_1109620_1109965_+	pfam08866, DUF1831, Putative amino acid metabolism	NA|375aa|up_7|NZ_CP040898.1_1110190_1111315_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|50aa|up_6|NZ_CP040898.1_1111371_1111521_+	NA	NA|413aa|up_5|NZ_CP040898.1_1111494_1112733_-	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|172aa|up_4|NZ_CP040898.1_1112749_1113265_-	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|190aa|up_3|NZ_CP040898.1_1113397_1113967_+	pfam13305, WHG, WHG domain	NA|122aa|up_2|NZ_CP040898.1_1114064_1114430_+	pfam06279, DUF1033, Protein of unknown function (DUF1033)	NA|694aa|up_1|NZ_CP040898.1_1114560_1116642_+	PRK07726, PRK07726, DNA topoisomerase 3	NA|288aa|up_0|NZ_CP040898.1_1116726_1117590_+	smart00871, AraC_E_bind, Bacterial transcription activator, effector binding domain	NA|33aa|down_0|NZ_CP040898.1_1118327_1118426_+	NA	NA|473aa|down_1|NZ_CP040898.1_1118585_1120004_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|338aa|down_2|NZ_CP040898.1_1120000_1121014_+	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|578aa|down_3|NZ_CP040898.1_1121018_1122752_+	TIGR02857, transport_ATP-binding_protein, thiol reductant ABC exporter, CydD subunit	NA|589aa|down_4|NZ_CP040898.1_1122748_1124515_+	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|327aa|down_5|NZ_CP040898.1_1124594_1125575_-	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|302aa|down_6|NZ_CP040898.1_1125696_1126602_+	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated	NA|404aa|down_7|NZ_CP040898.1_1126630_1127842_+	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|44aa|down_8|NZ_CP040898.1_1127918_1128050_+	NA	NA|808aa|down_9|NZ_CP040898.1_1128155_1130579_+	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
GCF_006349345.1_ASM634934v1	NZ_CP040898	Enterococcus faecalis strain HA-1 chromosome, complete genome	4	2432244-2432875	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	WYL,DEDDh,csa3,DinG,cas3,cas14j,csn2,cas2,cas1,cas9	Type II-A,Type II-B,Type II-C	GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC,GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC,GTGTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACTTATGAAA	36,36,46	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	9,9,2	9	TypeII-A,TypeII-B,TypeII-C	WYL,DEDDh,csa3,DinG,cas3,cas14j,csn2,cas2,cas1,cas9	NA|76aa|up_0|NZ_CP040898.1_2431543_2431771_-,NA|78aa|down_4|NZ_CP040898.1_2439307_2439541_-	NA|114aa|up_9|NZ_CP040898.1_2421070_2421412_-	PRK13676, PRK13676, YlbF/YmcA family competence regulator	NA|729aa|up_8|NZ_CP040898.1_2421474_2423661_-	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|284aa|up_7|NZ_CP040898.1_2424014_2424866_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|185aa|up_6|NZ_CP040898.1_2424989_2425544_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|507aa|up_5|NZ_CP040898.1_2425554_2427075_-	PLN02371, PLN02371, phosphoglucosamine mutase family protein	NA|152aa|up_4|NZ_CP040898.1_2427108_2427564_-	COG1438, ArgR, Arginine repressor [Transcription]	NA|506aa|up_3|NZ_CP040898.1_2427705_2429223_-	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|318aa|up_2|NZ_CP040898.1_2429223_2430177_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|338aa|up_1|NZ_CP040898.1_2430412_2431426_+	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]	NA|76aa|up_0|NZ_CP040898.1_2431543_2431771_-	NA	csn2|220aa|down_0|NZ_CP040898.1_2432968_2433628_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|110aa|down_1|NZ_CP040898.1_2433628_2433958_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|NZ_CP040898.1_2433954_2434821_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1338aa|down_3|NZ_CP040898.1_2434821_2438835_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|78aa|down_4|NZ_CP040898.1_2439307_2439541_-	NA	NA|472aa|down_5|NZ_CP040898.1_2439684_2441100_-	TIGR01886, Beta-Ala-Xaa_dipeptidase, dipeptidase PepV	NA|258aa|down_6|NZ_CP040898.1_2441233_2442007_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|550aa|down_7|NZ_CP040898.1_2442076_2443726_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|509aa|down_8|NZ_CP040898.1_2443929_2445456_+	PRK14022, PRK14022, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase	NA|191aa|down_9|NZ_CP040898.1_2445522_2446095_-	COG0400, COG0400, Predicted esterase [General function prediction only]
GCF_006349345.1_ASM634934v1	NZ_CP040897	Enterococcus faecalis strain HA-1 plasmid punnamed	1	33632-33763	1,1	CRISPRCasFinder,PILER-CR	no			Orphan	TTTCGAAAGTGGGAAAAACCAAC,TTCGTTCGAAAGTGGGAAAAACCAACC	23,27	0	0	NA	NA	NA:NA	2,2	2	Orphan	WYL,DEDDh,csa3,DinG,cas3,cas14j,csn2,cas2,cas1,cas9	NA|75aa|up_9|NZ_CP040897.1_27754_27979_+,NA|83aa|up_8|NZ_CP040897.1_28000_28249_+,NA|101aa|up_7|NZ_CP040897.1_28260_28563_+,NA|117aa|up_5|NZ_CP040897.1_30314_30665_+,NA|71aa|up_4|NZ_CP040897.1_30621_30834_+,NA|37aa|up_3|NZ_CP040897.1_30915_31026_+,NA|99aa|up_2|NZ_CP040897.1_31265_31562_+,NA|119aa|up_0|NZ_CP040897.1_32590_32947_+,NA|119aa|down_3|NZ_CP040897.1_38929_39286_+,NA|102aa|down_4|NZ_CP040897.1_39867_40173_+	NA|75aa|up_9|NZ_CP040897.1_27754_27979_+	NA	NA|83aa|up_8|NZ_CP040897.1_28000_28249_+	NA	NA|101aa|up_7|NZ_CP040897.1_28260_28563_+	NA	NA|443aa|up_6|NZ_CP040897.1_28989_30318_+	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V	NA|117aa|up_5|NZ_CP040897.1_30314_30665_+	NA	NA|71aa|up_4|NZ_CP040897.1_30621_30834_+	NA	NA|37aa|up_3|NZ_CP040897.1_30915_31026_+	NA	NA|99aa|up_2|NZ_CP040897.1_31265_31562_+	NA	NA|261aa|up_1|NZ_CP040897.1_31815_32598_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|119aa|up_0|NZ_CP040897.1_32590_32947_+	NA	NA|546aa|down_0|NZ_CP040897.1_34372_36010_+	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold	NA|385aa|down_1|NZ_CP040897.1_36020_37175_+	COG1916, COG1916, Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]	NA|318aa|down_2|NZ_CP040897.1_37207_38161_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|119aa|down_3|NZ_CP040897.1_38929_39286_+	NA	NA|102aa|down_4|NZ_CP040897.1_39867_40173_+	NA	NA|892aa|down_5|NZ_CP040897.1_40183_42859_+	TIGR04320, hypothetical_protein, SEC10/PgrA surface exclusion domain	NA|93aa|down_6|NZ_CP040897.1_42878_43157_+	TIGR01981, UPF0051_protein_Rv1462/MT1509, FeS assembly protein SufD	NA|112aa|down_7|NZ_CP040897.1_43616_43952_+	pfam17400, DUF5406, Family of unknown function (DUF5406)	NA|1309aa|down_8|NZ_CP040897.1_44258_48185_+	pfam08363, GbpC, Glucan-binding protein C	NA|119aa|down_9|NZ_CP040897.1_48245_48602_+	pfam09627, PrgU, PrgU-like protein
