assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006338945.1_ASM633894v1	NZ_CP032898	Helicobacter pylori strain 479-C-EK2 chromosome, complete genome	1	270430-270499	1	CRISPRCasFinder	no		csx1,cas4,cas3,DEDDh	Orphan	TTTCTTTTTAAGGGATTTCTTTTT	24	1	6	270454-270475|270454-270475|270454-270475|270454-270475|270454-270475|270454-270475	NZ_CP032898.1_615865-615886|NZ_CP032898.1_270486-270507|NZ_CP032898.1_615897-615918|NZ_CP032898.1_1198189-1198210|NZ_CP032898.1_270823-270844|NZ_CP032898.1_616038-616059	NA	1	1	Orphan	csx1,cas4,cas3,DEDDh	NA,NA|159aa|down_3|NZ_CP032898.1_274913_275390_+,NA|154aa|down_9|NZ_CP032898.1_281341_281803_+	NA|596aa|up_9|NZ_CP032898.1_259006_260794_+	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|349aa|up_8|NZ_CP032898.1_260790_261837_+	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|196aa|up_7|NZ_CP032898.1_261845_262433_+	smart00287, SH3b, Bacterial SH3 domain homologues	NA|264aa|up_6|NZ_CP032898.1_262440_263232_+	TIGR00507, Shikimate_dehydrogenase, shikimate dehydrogenase	NA|645aa|up_5|NZ_CP032898.1_263231_265166_+	COG0557, VacB, Exoribonuclease R [Transcription]	NA|341aa|up_4|NZ_CP032898.1_265155_266178_+	PRK08487, PRK08487, DNA polymerase III subunit delta; Validated	NA|143aa|up_3|NZ_CP032898.1_266330_266759_+	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|182aa|up_2|NZ_CP032898.1_266768_267314_+	PRK08486, PRK08486, single-stranded DNA-binding protein; Provisional	NA|86aa|up_1|NZ_CP032898.1_267336_267594_+	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|713aa|up_0|NZ_CP032898.1_268213_270352_+	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain	NA|77aa|down_0|NZ_CP032898.1_271345_271576_-	COG2841, COG2841, Uncharacterized protein conserved in bacteria [Function unknown]	NA|845aa|down_1|NZ_CP032898.1_271695_274230_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|191aa|down_2|NZ_CP032898.1_274231_274804_+	PRK04056, PRK04056, septum formation inhibitor Maf	NA|159aa|down_3|NZ_CP032898.1_274913_275390_+	NA	NA|335aa|down_4|NZ_CP032898.1_275864_276869_-	PRK13287, amiF, formamidase; Provisional	NA|376aa|down_5|NZ_CP032898.1_277035_278163_-	COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]	NA|184aa|down_6|NZ_CP032898.1_278162_278714_-	COG2952, COG2952, Uncharacterized protein conserved in bacteria [Function unknown]	NA|416aa|down_7|NZ_CP032898.1_278792_280040_-	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase	NA|299aa|down_8|NZ_CP032898.1_280043_280940_-	pfam00892, EamA, EamA-like transporter family	NA|154aa|down_9|NZ_CP032898.1_281341_281803_+	NA
GCF_006338945.1_ASM633894v1	NZ_CP032898	Helicobacter pylori strain 479-C-EK2 chromosome, complete genome	2	421297-421382	2	CRISPRCasFinder	no		csx1,cas4,cas3,DEDDh	Orphan	GTTCTTGAACCACTACTTCTCGCATG	26	0	0	NA	NA	NA	1	1	Orphan	csx1,cas4,cas3,DEDDh	NA|217aa|up_9|NZ_CP032898.1_409654_410305_+,NA|436aa|up_0|NZ_CP032898.1_418773_420081_-,NA|512aa|down_8|NZ_CP032898.1_430181_431717_-,NA|74aa|down_9|NZ_CP032898.1_431819_432041_+	NA|217aa|up_9|NZ_CP032898.1_409654_410305_+	NA	NA|659aa|up_8|NZ_CP032898.1_410355_412332_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|278aa|up_7|NZ_CP032898.1_412328_413162_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|441aa|up_6|NZ_CP032898.1_413226_414549_-	PRK08470, PRK08470, adenylosuccinate lyase; Provisional	NA|315aa|up_5|NZ_CP032898.1_414657_415602_-	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria	NA|408aa|up_4|NZ_CP032898.1_415614_416838_-	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha	NA|131aa|up_3|NZ_CP032898.1_416847_417240_-	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed	NA|187aa|up_2|NZ_CP032898.1_417255_417816_-	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated	NA|221aa|up_1|NZ_CP032898.1_418104_418767_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|436aa|up_0|NZ_CP032898.1_418773_420081_-	NA	NA|349aa|down_0|NZ_CP032898.1_421560_422607_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|337aa|down_1|NZ_CP032898.1_422776_423787_-	TIGR00749, Glucokinase_Glucose_kinase	NA|228aa|down_2|NZ_CP032898.1_423773_424457_-	TIGR01198, 6-phosphogluconolactonase_6PGL	NA|426aa|down_3|NZ_CP032898.1_424467_425745_-	COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]	NA|609aa|down_4|NZ_CP032898.1_425810_427637_+	TIGR01196, Phosphogluconate_dehydratase, 6-phosphogluconate dehydratase	NA|209aa|down_5|NZ_CP032898.1_427655_428282_+	TIGR01182, KHG/KDPG_aldolase_	NA|291aa|down_6|NZ_CP032898.1_428351_429224_+	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|251aa|down_7|NZ_CP032898.1_429407_430160_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|512aa|down_8|NZ_CP032898.1_430181_431717_-	NA	NA|74aa|down_9|NZ_CP032898.1_431819_432041_+	NA
GCF_006338945.1_ASM633894v1	NZ_CP032898	Helicobacter pylori strain 479-C-EK2 chromosome, complete genome	3	582860-583057	3	CRISPRCasFinder	no		csx1,cas4,cas3,DEDDh	Orphan	ATTAAAATTATAAGTCCCTTGATTGAA	27	0	0	NA	NA	I-B	3	3	Orphan	csx1,cas4,cas3,DEDDh	NA|220aa|up_8|NZ_CP032898.1_569535_570195_-,NA	NA|201aa|up_9|NZ_CP032898.1_568931_569534_-	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism]	NA|220aa|up_8|NZ_CP032898.1_569535_570195_-	NA	NA|268aa|up_7|NZ_CP032898.1_570191_570995_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|304aa|up_6|NZ_CP032898.1_570991_571903_-	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|181aa|up_5|NZ_CP032898.1_571918_572461_-	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I	NA|327aa|up_4|NZ_CP032898.1_572461_573442_-	PRK02870, PRK02870, heat shock protein HtpX; Provisional	NA|382aa|up_3|NZ_CP032898.1_573380_574526_-	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family	NA|194aa|up_2|NZ_CP032898.1_574522_575104_-	TIGR00615, Recombination_protein_RecR, recombination protein RecR	NA|69aa|up_1|NZ_CP032898.1_575232_575439_+	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme	NA|368aa|up_0|NZ_CP032898.1_575490_576594_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|333aa|down_0|NZ_CP032898.1_583916_584915_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|231aa|down_1|NZ_CP032898.1_585059_585752_+	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|1086aa|down_2|NZ_CP032898.1_585850_589108_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|144aa|down_3|NZ_CP032898.1_589112_589544_+	pfam01300, Sua5_yciO_yrdC, Telomere recombination	NA|814aa|down_4|NZ_CP032898.1_589805_592247_+	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|515aa|down_5|NZ_CP032898.1_592498_594043_+	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|521aa|down_6|NZ_CP032898.1_594735_596298_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|508aa|down_7|NZ_CP032898.1_596319_597843_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|679aa|down_8|NZ_CP032898.1_598676_600713_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|380aa|down_9|NZ_CP032898.1_600716_601856_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]
GCF_006338945.1_ASM633894v1	NZ_CP032898	Helicobacter pylori strain 479-C-EK2 chromosome, complete genome	4	1179658-1179801	4	CRISPRCasFinder	no		csx1,cas4,cas3,DEDDh	Orphan	AATTCTTCTAGTTTTTTTGAAATAATCTCTTCAGTAACGCTAGAGAGCCTTTCT	54	0	0	NA	NA	NA	1	1	Orphan	csx1,cas4,cas3,DEDDh	NA|261aa|up_3|NZ_CP032898.1_1176449_1177232_-,NA|68aa|up_2|NZ_CP032898.1_1177455_1177659_-,NA|262aa|up_1|NZ_CP032898.1_1177642_1178428_-,NA|87aa|up_0|NZ_CP032898.1_1179111_1179372_-,NA|102aa|down_0|NZ_CP032898.1_1180179_1180485_-	NA|344aa|up_9|NZ_CP032898.1_1168661_1169693_-	TIGR00207, Flagellar_motor_switch_protein_FliG, flagellar motor switch protein FliG	NA|568aa|up_8|NZ_CP032898.1_1169710_1171414_-	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)	NA|223aa|up_7|NZ_CP032898.1_1171457_1172126_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|539aa|up_6|NZ_CP032898.1_1172384_1174001_+	PRK05380, pyrG, CTP synthetase; Validated	NA|517aa|up_5|NZ_CP032898.1_1174009_1175560_+	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|299aa|up_4|NZ_CP032898.1_1175559_1176456_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|261aa|up_3|NZ_CP032898.1_1176449_1177232_-	NA	NA|68aa|up_2|NZ_CP032898.1_1177455_1177659_-	NA	NA|262aa|up_1|NZ_CP032898.1_1177642_1178428_-	NA	NA|87aa|up_0|NZ_CP032898.1_1179111_1179372_-	NA	NA|102aa|down_0|NZ_CP032898.1_1180179_1180485_-	NA	NA|153aa|down_1|NZ_CP032898.1_1180610_1181069_-	sd00010, SLR, Sel1-like repeat	NA|135aa|down_2|NZ_CP032898.1_1181177_1181582_-	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|267aa|down_3|NZ_CP032898.1_1181578_1182379_-	TIGR00732, Protein_smf, DNA protecting protein DprA	NA|78aa|down_4|NZ_CP032898.1_1182385_1182619_-	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE	NA|269aa|down_5|NZ_CP032898.1_1182615_1183422_-	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|331aa|down_6|NZ_CP032898.1_1183445_1184438_-	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|261aa|down_7|NZ_CP032898.1_1184695_1185478_+	PRK13980, PRK13980, NAD synthetase; Provisional	NA|313aa|down_8|NZ_CP032898.1_1185474_1186413_+	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]	NA|181aa|down_9|NZ_CP032898.1_1186345_1186888_-	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase
