assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006338685.1_ASM633868v1	NZ_CP032471	Helicobacter pylori strain 479-C2-EK2 chromosome, complete genome	1	270504-270573	1	CRISPRCasFinder	no		csx1,cas4,cas3,DEDDh	Orphan	TTTCTTTTTAAGGGATTTCTTTTT	24	1	5	270528-270549|270528-270549|270528-270549|270528-270549|270528-270549	NZ_CP032471.1_270560-270581|NZ_CP032471.1_615800-615821|NZ_CP032471.1_270799-270820|NZ_CP032471.1_616067-616088|NZ_CP032471.1_1198623-1198644	NA	1	1	Orphan	csx1,cas4,cas3,DEDDh	NA,NA|159aa|down_3|NZ_CP032471.1_274890_275367_+,NA|154aa|down_9|NZ_CP032471.1_281318_281780_+	NA|596aa|up_9|NZ_CP032471.1_258983_260771_+	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|349aa|up_8|NZ_CP032471.1_260767_261814_+	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|196aa|up_7|NZ_CP032471.1_261822_262410_+	smart00287, SH3b, Bacterial SH3 domain homologues	NA|264aa|up_6|NZ_CP032471.1_262417_263209_+	TIGR00507, Shikimate_dehydrogenase, shikimate dehydrogenase	NA|645aa|up_5|NZ_CP032471.1_263208_265143_+	COG0557, VacB, Exoribonuclease R [Transcription]	NA|341aa|up_4|NZ_CP032471.1_265132_266155_+	PRK08487, PRK08487, DNA polymerase III subunit delta; Validated	NA|143aa|up_3|NZ_CP032471.1_266307_266736_+	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|182aa|up_2|NZ_CP032471.1_266745_267291_+	PRK08486, PRK08486, single-stranded DNA-binding protein; Provisional	NA|86aa|up_1|NZ_CP032471.1_267313_267571_+	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|713aa|up_0|NZ_CP032471.1_268287_270426_+	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain	NA|77aa|down_0|NZ_CP032471.1_271321_271552_-	COG2841, COG2841, Uncharacterized protein conserved in bacteria [Function unknown]	NA|845aa|down_1|NZ_CP032471.1_271671_274206_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|191aa|down_2|NZ_CP032471.1_274207_274780_+	PRK04056, PRK04056, septum formation inhibitor Maf	NA|159aa|down_3|NZ_CP032471.1_274890_275367_+	NA	NA|335aa|down_4|NZ_CP032471.1_275841_276846_-	PRK13287, amiF, formamidase; Provisional	NA|376aa|down_5|NZ_CP032471.1_277012_278140_-	COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]	NA|184aa|down_6|NZ_CP032471.1_278139_278691_-	COG2952, COG2952, Uncharacterized protein conserved in bacteria [Function unknown]	NA|416aa|down_7|NZ_CP032471.1_278769_280017_-	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase	NA|299aa|down_8|NZ_CP032471.1_280020_280917_-	pfam00892, EamA, EamA-like transporter family	NA|154aa|down_9|NZ_CP032471.1_281318_281780_+	NA
GCF_006338685.1_ASM633868v1	NZ_CP032471	Helicobacter pylori strain 479-C2-EK2 chromosome, complete genome	2	421347-421432	2	CRISPRCasFinder	no		csx1,cas4,cas3,DEDDh	Orphan	GTTCTTGAACCACTACTTCTCGCATG	26	0	0	NA	NA	NA	1	1	Orphan	csx1,cas4,cas3,DEDDh	NA|217aa|up_9|NZ_CP032471.1_409705_410356_+,NA|436aa|up_0|NZ_CP032471.1_418824_420132_-,NA|512aa|down_8|NZ_CP032471.1_430231_431767_-	NA|217aa|up_9|NZ_CP032471.1_409705_410356_+	NA	NA|659aa|up_8|NZ_CP032471.1_410406_412383_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|278aa|up_7|NZ_CP032471.1_412379_413213_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|441aa|up_6|NZ_CP032471.1_413277_414600_-	PRK08470, PRK08470, adenylosuccinate lyase; Provisional	NA|315aa|up_5|NZ_CP032471.1_414708_415653_-	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria	NA|408aa|up_4|NZ_CP032471.1_415665_416889_-	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha	NA|131aa|up_3|NZ_CP032471.1_416898_417291_-	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed	NA|187aa|up_2|NZ_CP032471.1_417306_417867_-	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated	NA|221aa|up_1|NZ_CP032471.1_418155_418818_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|436aa|up_0|NZ_CP032471.1_418824_420132_-	NA	NA|349aa|down_0|NZ_CP032471.1_421610_422657_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|337aa|down_1|NZ_CP032471.1_422826_423837_-	TIGR00749, Glucokinase_Glucose_kinase	NA|228aa|down_2|NZ_CP032471.1_423823_424507_-	TIGR01198, 6-phosphogluconolactonase_6PGL	NA|426aa|down_3|NZ_CP032471.1_424517_425795_-	COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]	NA|609aa|down_4|NZ_CP032471.1_425860_427687_+	TIGR01196, Phosphogluconate_dehydratase, 6-phosphogluconate dehydratase	NA|209aa|down_5|NZ_CP032471.1_427705_428332_+	TIGR01182, KHG/KDPG_aldolase_	NA|291aa|down_6|NZ_CP032471.1_428401_429274_+	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|251aa|down_7|NZ_CP032471.1_429457_430210_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|512aa|down_8|NZ_CP032471.1_430231_431767_-	NA	NA|345aa|down_9|NZ_CP032471.1_432589_433624_+	TIGR01179, UDP-glucose_4-epimerase, UDP-glucose-4-epimerase GalE
GCF_006338685.1_ASM633868v1	NZ_CP032471	Helicobacter pylori strain 479-C2-EK2 chromosome, complete genome	3	582880-583077	3	CRISPRCasFinder	no		csx1,cas4,cas3,DEDDh	Orphan	ATTAAAATTATAAGTCCCTTGATTGAA	27	0	0	NA	NA	I-B	3	3	Orphan	csx1,cas4,cas3,DEDDh	NA|220aa|up_8|NZ_CP032471.1_569555_570215_-,NA	NA|201aa|up_9|NZ_CP032471.1_568951_569554_-	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism]	NA|220aa|up_8|NZ_CP032471.1_569555_570215_-	NA	NA|268aa|up_7|NZ_CP032471.1_570211_571015_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|304aa|up_6|NZ_CP032471.1_571011_571923_-	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|181aa|up_5|NZ_CP032471.1_571938_572481_-	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I	NA|327aa|up_4|NZ_CP032471.1_572481_573462_-	PRK02870, PRK02870, heat shock protein HtpX; Provisional	NA|382aa|up_3|NZ_CP032471.1_573400_574546_-	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family	NA|194aa|up_2|NZ_CP032471.1_574542_575124_-	TIGR00615, Recombination_protein_RecR, recombination protein RecR	NA|69aa|up_1|NZ_CP032471.1_575252_575459_+	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme	NA|368aa|up_0|NZ_CP032471.1_575510_576614_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|333aa|down_0|NZ_CP032471.1_583936_584935_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|231aa|down_1|NZ_CP032471.1_585079_585772_+	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|1086aa|down_2|NZ_CP032471.1_585870_589128_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|144aa|down_3|NZ_CP032471.1_589132_589564_+	pfam01300, Sua5_yciO_yrdC, Telomere recombination	NA|814aa|down_4|NZ_CP032471.1_589825_592267_+	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|515aa|down_5|NZ_CP032471.1_592522_594067_+	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|521aa|down_6|NZ_CP032471.1_594760_596323_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|508aa|down_7|NZ_CP032471.1_596344_597868_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|679aa|down_8|NZ_CP032471.1_598697_600734_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|380aa|down_9|NZ_CP032471.1_600737_601877_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]
GCF_006338685.1_ASM633868v1	NZ_CP032471	Helicobacter pylori strain 479-C2-EK2 chromosome, complete genome	4	615744-615813	4	CRISPRCasFinder	no		csx1,cas4,cas3,DEDDh	Orphan	TTTCTTTTTAAGGGATTTCTTTTT	24	1	5	615768-615789|615768-615789|615768-615789|615768-615789|615768-615789	NZ_CP032471.1_270560-270581|NZ_CP032471.1_615800-615821|NZ_CP032471.1_270799-270820|NZ_CP032471.1_616067-616088|NZ_CP032471.1_1198623-1198644	NA	1	1	Orphan	csx1,cas4,cas3,DEDDh	NA|41aa|up_4|NZ_CP032471.1_610224_610347_+,NA|131aa|down_0|NZ_CP032471.1_616231_616624_+,NA|615aa|down_7|NZ_CP032471.1_627449_629294_+,NA|129aa|down_9|NZ_CP032471.1_630548_630935_+	NA|312aa|up_9|NZ_CP032471.1_604358_605294_-	PRK05842, flgD, flagellar hook assembly protein FlgD	NA|514aa|up_8|NZ_CP032471.1_605344_606886_-	pfam02120, Flg_hook, Flagellar hook-length control protein FliK	NA|337aa|up_7|NZ_CP032471.1_607024_608035_+	COG0857, Pta, BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]	NA|294aa|up_6|NZ_CP032471.1_608627_609509_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|100aa|up_5|NZ_CP032471.1_609914_610214_+	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain	NA|41aa|up_4|NZ_CP032471.1_610224_610347_+	NA	NA|243aa|up_3|NZ_CP032471.1_610463_611192_+	TIGR00073, nickel_incorporation_protein_HypB, hydrogenase accessory protein HypB	NA|79aa|up_2|NZ_CP032471.1_611191_611428_+	COG0298, HypC, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]	NA|371aa|up_1|NZ_CP032471.1_611446_612559_+	TIGR00075, Hydrogenase_isoenzymes_formation_protein_HypD, hydrogenase expression/formation protein HypD	NA|694aa|up_0|NZ_CP032471.1_613584_615666_+	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain	NA|131aa|down_0|NZ_CP032471.1_616231_616624_+	NA	NA|175aa|down_1|NZ_CP032471.1_617083_617608_-	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|285aa|down_2|NZ_CP032471.1_617747_618602_+	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs	NA|327aa|down_3|NZ_CP032471.1_618594_619575_+	pfam01032, FecCD, FecCD transport family	NA|256aa|down_4|NZ_CP032471.1_619574_620342_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|466aa|down_5|NZ_CP032471.1_624498_625896_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|487aa|down_6|NZ_CP032471.1_625896_627357_-	pfam03023, MVIN, MviN-like protein	NA|615aa|down_7|NZ_CP032471.1_627449_629294_+	NA	NA|184aa|down_8|NZ_CP032471.1_629319_629871_+	TIGR00084, Holliday_junction_ATP-dependent_DNA_helicase_RuvA, Holliday junction DNA helicase, RuvA subunit	NA|129aa|down_9|NZ_CP032471.1_630548_630935_+	NA
GCF_006338685.1_ASM633868v1	NZ_CP032471	Helicobacter pylori strain 479-C2-EK2 chromosome, complete genome	5	1180143-1180286	5	CRISPRCasFinder	no		csx1,cas4,cas3,DEDDh	Orphan	AATTCTTCTAGTTTTTTTGAAATAATCTCTTCAGTAACGCTAGAGAGCCTTTCT	54	0	0	NA	NA	NA	1	1	Orphan	csx1,cas4,cas3,DEDDh	NA|261aa|up_3|NZ_CP032471.1_1176930_1177713_-,NA|68aa|up_2|NZ_CP032471.1_1177936_1178140_-,NA|262aa|up_1|NZ_CP032471.1_1178123_1178909_-,NA|87aa|up_0|NZ_CP032471.1_1179596_1179857_-,NA|102aa|down_0|NZ_CP032471.1_1180664_1180970_-	NA|344aa|up_9|NZ_CP032471.1_1169146_1170178_-	TIGR00207, Flagellar_motor_switch_protein_FliG, flagellar motor switch protein FliG	NA|568aa|up_8|NZ_CP032471.1_1170195_1171899_-	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)	NA|223aa|up_7|NZ_CP032471.1_1171942_1172611_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|539aa|up_6|NZ_CP032471.1_1172865_1174482_+	PRK05380, pyrG, CTP synthetase; Validated	NA|517aa|up_5|NZ_CP032471.1_1174490_1176041_+	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|299aa|up_4|NZ_CP032471.1_1176040_1176937_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|261aa|up_3|NZ_CP032471.1_1176930_1177713_-	NA	NA|68aa|up_2|NZ_CP032471.1_1177936_1178140_-	NA	NA|262aa|up_1|NZ_CP032471.1_1178123_1178909_-	NA	NA|87aa|up_0|NZ_CP032471.1_1179596_1179857_-	NA	NA|102aa|down_0|NZ_CP032471.1_1180664_1180970_-	NA	NA|153aa|down_1|NZ_CP032471.1_1181095_1181554_-	sd00010, SLR, Sel1-like repeat	NA|135aa|down_2|NZ_CP032471.1_1181661_1182066_-	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|267aa|down_3|NZ_CP032471.1_1182062_1182863_-	TIGR00732, Protein_smf, DNA protecting protein DprA	NA|78aa|down_4|NZ_CP032471.1_1182869_1183103_-	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE	NA|269aa|down_5|NZ_CP032471.1_1183099_1183906_-	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|331aa|down_6|NZ_CP032471.1_1183929_1184922_-	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|261aa|down_7|NZ_CP032471.1_1185179_1185962_+	PRK13980, PRK13980, NAD synthetase; Provisional	NA|313aa|down_8|NZ_CP032471.1_1185958_1186897_+	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]	NA|181aa|down_9|NZ_CP032471.1_1186829_1187372_-	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase
