assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006337025.1_ASM633702v1	NZ_CP040886	Escherichia coli strain K71-77 chromosome, complete genome	1	318272-318363	1	CRISPRCasFinder	no		cas3,DinG,DEDDh,WYL,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,WYL,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4	NA,NA	NA|503aa|up_9|NZ_CP040886.1_305856_307365_-	PRK15419, PRK15419, sodium/proline symporter PutP	NA|1321aa|up_8|NZ_CP040886.1_307786_311749_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP040886.1_311788_312427_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP040886.1_312714_313806_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP040886.1_313805_314498_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP040886.1_314509_314896_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP040886.1_314903_315704_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP040886.1_315713_316304_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP040886.1_316314_316809_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP040886.1_316829_318158_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP040886.1_318786_319383_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP040886.1_319403_319631_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP040886.1_319668_320910_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|420aa|down_3|NZ_CP040886.1_321201_322461_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP040886.1_322720_323641_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP040886.1_323640_323946_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP040886.1_324038_324638_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP040886.1_324634_327181_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP040886.1_327180_328353_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP040886.1_328482_329175_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_006337025.1_ASM633702v1	NZ_CP040886	Escherichia coli strain K71-77 chromosome, complete genome	2	623114-623258	2	CRISPRCasFinder	no		cas3,DinG,DEDDh,WYL,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,WYL,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4	NA|94aa|up_7|NZ_CP040886.1_618499_618781_+,NA|201aa|up_5|NZ_CP040886.1_619311_619914_-,NA|62aa|up_4|NZ_CP040886.1_620038_620224_-,NA|56aa|up_3|NZ_CP040886.1_620156_620324_+,NA	NA|61aa|up_9|NZ_CP040886.1_618142_618325_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|up_8|NZ_CP040886.1_618297_618489_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|up_7|NZ_CP040886.1_618499_618781_+	NA	NA|74aa|up_6|NZ_CP040886.1_618879_619101_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|201aa|up_5|NZ_CP040886.1_619311_619914_-	NA	NA|62aa|up_4|NZ_CP040886.1_620038_620224_-	NA	NA|56aa|up_3|NZ_CP040886.1_620156_620324_+	NA	NA|73aa|up_2|NZ_CP040886.1_620363_620582_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_CP040886.1_620559_621630_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP040886.1_621764_623048_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP040886.1_623281_625543_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP040886.1_625725_627159_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP040886.1_627234_628287_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP040886.1_628470_629424_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP040886.1_629464_630460_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP040886.1_630614_631433_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP040886.1_631433_632492_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP040886.1_632494_633184_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP040886.1_633183_633957_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP040886.1_634123_634273_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_006337025.1_ASM633702v1	NZ_CP040886	Escherichia coli strain K71-77 chromosome, complete genome	3	1120034-1120187	3	CRISPRCasFinder	no		cas3,DinG,DEDDh,WYL,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4	Orphan	CGCCTTATCCGGCCTACCGATCCAGCACAGGTTTGTAGGCATGATAAGACGCG	53	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,WYL,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4	NA,NA|150aa|down_8|NZ_CP040886.1_1129764_1130214_-	NA|352aa|up_9|NZ_CP040886.1_1109859_1110915_+	PRK10159, PRK10159, phosphoporin PhoE	NA|134aa|up_8|NZ_CP040886.1_1110953_1111355_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_7|NZ_CP040886.1_1111412_1112657_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_6|NZ_CP040886.1_1112748_1113207_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_5|NZ_CP040886.1_1113467_1114925_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|89aa|up_4|NZ_CP040886.1_1115281_1115548_-	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|151aa|up_3|NZ_CP040886.1_1115854_1116307_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|352aa|up_2|NZ_CP040886.1_1116303_1117359_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|257aa|up_1|NZ_CP040886.1_1117429_1118200_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|580aa|up_0|NZ_CP040886.1_1118159_1119899_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|NZ_CP040886.1_1120216_1120714_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|253aa|down_1|NZ_CP040886.1_1120889_1121648_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|247aa|down_2|NZ_CP040886.1_1121939_1122680_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_3|NZ_CP040886.1_1122650_1123418_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_4|NZ_CP040886.1_1123623_1124202_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_5|NZ_CP040886.1_1124441_1126886_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_6|NZ_CP040886.1_1126928_1127402_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_7|NZ_CP040886.1_1127555_1128326_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional	NA|150aa|down_8|NZ_CP040886.1_1129764_1130214_-	NA	NA|1020aa|down_9|NZ_CP040886.1_1130225_1133285_-	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane]
GCF_006337025.1_ASM633702v1	NZ_CP040886	Escherichia coli strain K71-77 chromosome, complete genome	4	1309366-1309481	4	CRISPRCasFinder	no		cas3,DinG,DEDDh,WYL,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4	Orphan	AACGCCTGATGCGACGCTGACGCGTCTTATC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,WYL,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4	NA,NA	NA|393aa|up_9|NZ_CP040886.1_1297381_1298560_-	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter	NA|44aa|up_8|NZ_CP040886.1_1298661_1298793_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|552aa|up_7|NZ_CP040886.1_1298881_1300537_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|328aa|up_6|NZ_CP040886.1_1300700_1301684_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|NZ_CP040886.1_1301659_1303270_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|NZ_CP040886.1_1303253_1303952_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|NZ_CP040886.1_1304065_1304830_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|NZ_CP040886.1_1304915_1305794_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|NZ_CP040886.1_1306132_1307833_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|NZ_CP040886.1_1307843_1309346_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|NZ_CP040886.1_1309545_1310241_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|NZ_CP040886.1_1310315_1312667_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|NZ_CP040886.1_1312831_1315738_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|NZ_CP040886.1_1315749_1316409_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|272aa|down_4|NZ_CP040886.1_1316525_1317341_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_5|NZ_CP040886.1_1317595_1319950_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_6|NZ_CP040886.1_1320002_1321289_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_7|NZ_CP040886.1_1321288_1322278_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_8|NZ_CP040886.1_1322274_1323096_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_9|NZ_CP040886.1_1323098_1323476_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed
GCF_006337025.1_ASM633702v1	NZ_CP040886	Escherichia coli strain K71-77 chromosome, complete genome	5	1332394-1332526	1	PILER-CR	no		cas3,DinG,DEDDh,WYL,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,DEDDh,WYL,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4	NA,NA	NA|126aa|up_9|NZ_CP040886.1_1323098_1323476_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP040886.1_1323482_1324325_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP040886.1_1324402_1324882_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP040886.1_1325073_1326936_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP040886.1_1326928_1327459_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP040886.1_1327566_1328898_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP040886.1_1328955_1329243_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP040886.1_1329239_1330526_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP040886.1_1330576_1331518_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP040886.1_1331532_1332303_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP040886.1_1332776_1334291_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP040886.1_1334321_1335464_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP040886.1_1335592_1336810_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP040886.1_1336883_1338437_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP040886.1_1338545_1339331_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP040886.1_1339336_1339927_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP040886.1_1340012_1340408_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP040886.1_1340668_1343890_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP040886.1_1343907_1345056_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP040886.1_1345511_1346333_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_006337025.1_ASM633702v1	NZ_CP040886	Escherichia coli strain K71-77 chromosome, complete genome	6	2926033-2926172	5	CRISPRCasFinder	no		cas3,DinG,DEDDh,WYL,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4	Orphan	TTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCA	49	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,WYL,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4	NA,NA	NA|336aa|up_9|NZ_CP040886.1_2918498_2919506_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|293aa|up_8|NZ_CP040886.1_2919711_2920590_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|up_7|NZ_CP040886.1_2920598_2921594_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|up_6|NZ_CP040886.1_2921802_2922327_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|up_5|NZ_CP040886.1_2922320_2922824_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|101aa|up_4|NZ_CP040886.1_2922810_2923113_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|up_3|NZ_CP040886.1_2923163_2923607_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|173aa|up_2|NZ_CP040886.1_2923586_2924105_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|212aa|up_1|NZ_CP040886.1_2924232_2924868_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|347aa|up_0|NZ_CP040886.1_2924940_2925981_+	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|192aa|down_0|NZ_CP040886.1_2926185_2926761_-	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|197aa|down_1|NZ_CP040886.1_2926770_2927361_-	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional	NA|132aa|down_2|NZ_CP040886.1_2927380_2927776_-	TIGR00252, UPF0102_protein_HI_1656, TIGR00252 family protein	NA|679aa|down_3|NZ_CP040886.1_2927733_2929770_-	COG3107, LppC, Putative lipoprotein [General function prediction only]	NA|287aa|down_4|NZ_CP040886.1_2929834_2930695_+	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional	NA|364aa|down_5|NZ_CP040886.1_2930737_2931829_-	pfam00419, Fimbrial, Fimbrial protein	NA|791aa|down_6|NZ_CP040886.1_2931839_2934212_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|252aa|down_7|NZ_CP040886.1_2935361_2936117_-	PRK09762, PRK09762, galactosamine-6-phosphate isomerase; Provisional	NA|264aa|down_8|NZ_CP040886.1_2936117_2936909_-	PRK09855, PRK09855, PTS N-acetylgalactosamine transporter subunit IID	NA|268aa|down_9|NZ_CP040886.1_2936898_2937702_-	PRK09757, PRK09757, PTS N-acetylgalactosamine transporter subunit IIC
GCF_006337025.1_ASM633702v1	NZ_CP040886	Escherichia coli strain K71-77 chromosome, complete genome	7	2969372-2969489	6	CRISPRCasFinder	no		cas3,DinG,DEDDh,WYL,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,WYL,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4	NA,NA|55aa|down_0|NZ_CP040886.1_2969562_2969727_-	NA|115aa|up_9|NZ_CP040886.1_2957093_2957438_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP040886.1_2957626_2958565_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP040886.1_2958663_2959653_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP040886.1_2959674_2961006_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP040886.1_2961031_2962240_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP040886.1_2962273_2964568_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP040886.1_2964581_2964971_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP040886.1_2965042_2966407_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP040886.1_2966681_2968013_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP040886.1_2968040_2969351_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP040886.1_2969562_2969727_-	NA	NA|234aa|down_1|NZ_CP040886.1_2969749_2970451_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP040886.1_2970555_2971452_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP040886.1_2971502_2971859_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP040886.1_2972100_2972466_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP040886.1_2972758_2973745_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP040886.1_2973814_2974297_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP040886.1_2974392_2974692_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP040886.1_2974681_2975086_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP040886.1_2975088_2975394_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_006337025.1_ASM633702v1	NZ_CP040886	Escherichia coli strain K71-77 chromosome, complete genome	8	3344376-3344831	2,7,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,DinG,DEDDh,WYL,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACC,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	7,7,7	7	Orphan	cas3,DinG,DEDDh,WYL,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4	NA|47aa|up_1|NZ_CP040886.1_3343085_3343226_-,NA	NA|434aa|up_9|NZ_CP040886.1_3333782_3335084_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP040886.1_3335131_3337366_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP040886.1_3337443_3337692_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP040886.1_3337691_3338027_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP040886.1_3338097_3338889_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP040886.1_3339116_3340754_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP040886.1_3340841_3342140_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP040886.1_3342199_3343072_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP040886.1_3343085_3343226_-	NA	NA|224aa|up_0|NZ_CP040886.1_3343364_3344036_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP040886.1_3345468_3346947_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP040886.1_3346973_3348251_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP040886.1_3348569_3349355_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP040886.1_3349424_3350879_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP040886.1_3350972_3352310_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP040886.1_3352287_3353067_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP040886.1_3353063_3353924_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP040886.1_3354071_3354647_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP040886.1_3354663_3354924_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP040886.1_3354914_3356186_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_006337025.1_ASM633702v1	NZ_CP040886	Escherichia coli strain K71-77 chromosome, complete genome	9	3367216-3367611	8,3,2	CRISPRCasFinder,PILER-CR,CRT	no	cas5,cas6e,cas1,cas2	cas3,DinG,DEDDh,WYL,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4	Unclear	TGTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	30,29,29	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Unclear	cas3,DinG,DEDDh,WYL,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4	NA,NA	NA|424aa|up_9|NZ_CP040886.1_3354914_3356186_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|up_8|NZ_CP040886.1_3356263_3356629_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_7|NZ_CP040886.1_3356944_3358744_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_6|NZ_CP040886.1_3358743_3360456_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_5|NZ_CP040886.1_3360529_3361264_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_4|NZ_CP040886.1_3361528_3361681_+	pfam01848, HOK_GEF, Hok/gef family	cas5|249aa|up_3|NZ_CP040886.1_3364531_3365278_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP040886.1_3365259_3365910_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP040886.1_3365906_3366830_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP040886.1_3366826_3367120_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP040886.1_3367692_3368730_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP040886.1_3368981_3369890_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP040886.1_3369891_3371319_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP040886.1_3371318_3371924_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP040886.1_3371973_3372297_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP040886.1_3372490_3372802_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP040886.1_3372820_3373531_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP040886.1_3373530_3374010_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP040886.1_3374006_3375056_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP040886.1_3375036_3375798_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_006337025.1_ASM633702v1	NZ_CP040886	Escherichia coli strain K71-77 chromosome, complete genome	10	3759492-3759598	9	CRISPRCasFinder	no		cas3,DinG,DEDDh,WYL,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4	Orphan	ATTGTCCAACGGTTGTCCAACGGTTGTCCA	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,WYL,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4	NA|157aa|up_4|NZ_CP040886.1_3756450_3756921_-,NA|100aa|up_3|NZ_CP040886.1_3756929_3757229_-,NA|109aa|down_1|NZ_CP040886.1_3761509_3761836_+,NA|67aa|down_2|NZ_CP040886.1_3761832_3762033_+,NA|89aa|down_3|NZ_CP040886.1_3762044_3762311_+,NA|69aa|down_4|NZ_CP040886.1_3762313_3762520_+	NA|158aa|up_9|NZ_CP040886.1_3754212_3754686_-	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional	NA|236aa|up_8|NZ_CP040886.1_3754686_3755394_-	COG4712, COG4712, Uncharacterized protein conserved in bacteria [Function unknown]	NA|51aa|up_7|NZ_CP040886.1_3755648_3755801_-	pfam06301, Lambda_Kil, Bacteriophage lambda Kil protein	NA|45aa|up_6|NZ_CP040886.1_3755785_3755920_-	pfam08134, cIII, cIII protein family	NA|104aa|up_5|NZ_CP040886.1_3755995_3756307_-	PHA01516, PHA01516, hypothetical protein	NA|157aa|up_4|NZ_CP040886.1_3756450_3756921_-	NA	NA|100aa|up_3|NZ_CP040886.1_3756929_3757229_-	NA	NA|217aa|up_2|NZ_CP040886.1_3757631_3758282_-	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|62aa|up_1|NZ_CP040886.1_3758362_3758548_+	pfam14549, P22_Cro, DNA-binding transcriptional regulator Cro	NA|93aa|up_0|NZ_CP040886.1_3758656_3758935_+	pfam05269, Phage_CII, Bacteriophage CII protein	NA|479aa|down_0|NZ_CP040886.1_3759997_3761434_+	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|109aa|down_1|NZ_CP040886.1_3761509_3761836_+	NA	NA|67aa|down_2|NZ_CP040886.1_3761832_3762033_+	NA	NA|89aa|down_3|NZ_CP040886.1_3762044_3762311_+	NA	NA|69aa|down_4|NZ_CP040886.1_3762313_3762520_+	NA	NA|137aa|down_5|NZ_CP040886.1_3762528_3762939_+	pfam05772, NinB, NinB protein	NA|59aa|down_6|NZ_CP040886.1_3762935_3763112_+	pfam05322, NinE, NINE Protein	NA|317aa|down_7|NZ_CP040886.1_3763108_3764059_+	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|59aa|down_8|NZ_CP040886.1_3764051_3764228_+	pfam05810, NinF, NinF protein	NA|204aa|down_9|NZ_CP040886.1_3764220_3764832_+	pfam05766, NinG, Bacteriophage Lambda NinG protein
GCF_006337025.1_ASM633702v1	NZ_CP040886	Escherichia coli strain K71-77 chromosome, complete genome	11	3909722-3909839	10	CRISPRCasFinder	no		cas3,DinG,DEDDh,WYL,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,WYL,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4	NA|105aa|up_3|NZ_CP040886.1_3904802_3905117_-,NA	NA|300aa|up_9|NZ_CP040886.1_3896715_3897615_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_8|NZ_CP040886.1_3897807_3898998_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_7|NZ_CP040886.1_3898994_3900254_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_6|NZ_CP040886.1_3900243_3901872_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_5|NZ_CP040886.1_3902144_3903503_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_4|NZ_CP040886.1_3903507_3904584_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|105aa|up_3|NZ_CP040886.1_3904802_3905117_-	NA	NA|217aa|up_2|NZ_CP040886.1_3907536_3908187_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP040886.1_3908240_3908495_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP040886.1_3908494_3909625_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP040886.1_3909858_3912144_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP040886.1_3912839_3916592_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP040886.1_3916719_3917442_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP040886.1_3917588_3920216_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP040886.1_3920364_3922053_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP040886.1_3922049_3922673_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP040886.1_3922816_3927211_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP040886.1_3927211_3928861_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP040886.1_3928865_3929642_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP040886.1_3929715_3930900_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_006337025.1_ASM633702v1	NZ_CP040886	Escherichia coli strain K71-77 chromosome, complete genome	12	4600781-4600904	11	CRISPRCasFinder	no	DEDDh	cas3,DinG,DEDDh,WYL,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,WYL,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4	NA,NA|30aa|down_7|NZ_CP040886.1_4609800_4609890_+	NA|471aa|up_9|NZ_CP040886.1_4590235_4591648_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP040886.1_4592203_4592413_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP040886.1_4592868_4593495_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP040886.1_4593515_4595618_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP040886.1_4595621_4596269_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP040886.1_4596332_4597001_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP040886.1_4596997_4597783_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP040886.1_4597786_4598599_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP040886.1_4598610_4600215_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP040886.1_4600340_4600646_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP040886.1_4601218_4602475_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP040886.1_4602515_4603889_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP040886.1_4604103_4604745_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP040886.1_4604784_4605933_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP040886.1_4606223_4607435_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP040886.1_4607547_4608480_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP040886.1_4608476_4609502_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP040886.1_4609800_4609890_+	NA	NA|390aa|down_8|NZ_CP040886.1_4610055_4611225_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP040886.1_4611370_4611952_-	PRK10543, PRK10543, superoxide dismutase [Fe]
