The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP025454	Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76334 chromosome, complete genome	4762732	929958	939306	4762732	integrase,protease	Dickeya_phage(16.67%)	9	931209:931223	944870:944884
WP_001201750.1|929958_931077_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
WP_000125885.1|931073_933020_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	41.9	2.0e-39
931209:931223	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
WP_000447499.1|933149_933371_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000520789.1|933694_934015_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000934057.1|934045_936322_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	1.1e-164
WP_071591100.1|936517_936847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001747668.1|936818_937295_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001117984.1|938569_938767_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001747671.1|938928_939306_-|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	40.2	1.0e-19
944870:944884	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
>prophage 2
NZ_CP025454	Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76334 chromosome, complete genome	4762732	1083545	1120781	4762732	transposase,plate	Enterobacteria_phage(20.0%)	29	NA	NA
WP_100148601.1|1083545_1084801_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	33.9	2.4e-17
WP_000623370.1|1085081_1085540_-	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
WP_001227394.1|1085663_1086035_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001022123.1|1086043_1086484_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000928422.1|1086503_1087016_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_001216386.1|1087056_1087503_-	DUF1240 domain-containing protein	NA	NA	NA	NA	NA
WP_006496204.1|1087531_1087663_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001139255.1|1089947_1090790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000002328.1|1090813_1091293_-	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_000076070.1|1091311_1092673_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001137105.1|1092683_1096145_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
WP_000365805.1|1096223_1097636_-	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_000089147.1|1097637_1098375_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA	NA
WP_000614296.1|1098371_1101107_-	type VI secretion system ATPase TssH	NA	K4FB40	Cronobacter_phage	31.5	2.9e-84
WP_000343978.1|1101119_1101878_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
WP_000246455.1|1101882_1103214_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_130549539.1|1103216_1103720_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_000796942.1|1103746_1105033_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
WP_000509052.1|1105057_1106146_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_000393863.1|1106109_1107963_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_000611701.1|1107967_1108384_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_001747654.1|1108380_1109853_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_000524265.1|1109901_1110114_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000031252.1|1110143_1110647_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_001142966.1|1111275_1111794_+	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_000103453.1|1112016_1114158_+	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	25.4	2.9e-23
WP_000014621.1|1114226_1118393_+	RHS repeat protein	NA	A0A2H4JFP5	uncultured_Caudovirales_phage	40.6	1.4e-21
WP_000739389.1|1118460_1119426_+	Sel1 repeat protein	NA	NA	NA	NA	NA
WP_109188131.1|1119619_1120781_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	40.8	1.2e-47
>prophage 3
NZ_CP025454	Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76334 chromosome, complete genome	4762732	2127323	2137830	4762732		Enterobacteria_phage(37.5%)	10	NA	NA
WP_000126349.1|2127323_2128637_-	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
WP_000565903.1|2128663_2129743_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	1.7e-16
WP_000648785.1|2129747_2130521_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000018219.1|2130536_2131511_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000973710.1|2131516_2132068_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	1.3e-52
WP_000857531.1|2132068_2132947_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	2.1e-108
WP_001023665.1|2132994_2133894_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	1.1e-29
WP_000697849.1|2133893_2134979_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.6	1.0e-101
WP_000981469.1|2135355_2136249_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_001111843.1|2136426_2137830_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	3.1e-21
>prophage 4
NZ_CP025454	Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76334 chromosome, complete genome	4762732	2213860	2223031	4762732	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000195330.1|2213860_2215894_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
WP_000703143.1|2216134_2216593_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	71.9	2.4e-52
WP_001197951.1|2216764_2217295_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950413.1|2217351_2217819_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000598637.1|2217865_2218585_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272851.1|2218581_2220267_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	6.2e-279
WP_001240418.1|2220489_2221221_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|2221280_2221388_+	protein YohO	NA	NA	NA	NA	NA
WP_000824850.1|2221368_2222100_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569166.1|2222083_2223031_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
>prophage 5
NZ_CP025454	Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76334 chromosome, complete genome	4762732	2692491	2762513	4762732	tRNA,tail	Salmonella_phage(40.0%)	54	NA	NA
WP_000083343.1|2692491_2693229_-|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	tRNA	NA	NA	NA	NA
WP_000219174.1|2693359_2694694_+	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
WP_001747585.1|2694711_2695611_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000188414.1|2695713_2696301_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA	NA
WP_000627811.1|2696362_2696746_-	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
WP_000179975.1|2697064_2697754_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	50.0	2.1e-55
WP_000997368.1|2697869_2698907_-|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
WP_001098732.1|2699110_2699530_+	thioredoxin TrxC	NA	A0A0K2FIM3	Achromobacter_phage	40.6	1.2e-16
WP_000183644.1|2699602_2700283_+	DTW domain-containing protein	NA	NA	NA	NA	NA
WP_000082651.1|2700336_2702997_+	protein lysine acetyltransferase	NA	NA	NA	NA	NA
WP_000949286.1|2703111_2704467_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_001264468.1|2704509_2704833_+	YfiM family lipoprotein	NA	NA	NA	NA	NA
WP_000807814.1|2704829_2706131_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	30.1	3.4e-43
WP_000985658.1|2706234_2706690_-	DUF4385 domain-containing protein	NA	E3SMI8	Prochlorococcus_phage	49.3	8.6e-34
WP_001235092.1|2712745_2715319_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.5	2.6e-127
WP_000992634.1|2715448_2716180_-	polyphenol oxidase	NA	NA	NA	NA	NA
WP_000079130.1|2716176_2717157_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_000197660.1|2717288_2718026_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_000178449.1|2718297_2718636_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_010989056.1|2718739_2718787_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000200080.1|2718886_2720047_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_000210991.1|2720007_2720916_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
WP_000225191.1|2720973_2722095_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_001168062.1|2722104_2723175_-	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.8	2.4e-90
WP_001212379.1|2723614_2724133_+	YfiR family protein	NA	NA	NA	NA	NA
WP_001030981.1|2724125_2725346_+	diguanylate cyclase DgcN	NA	A0A2K8I9Y5	Pseudomonas_phage	36.2	5.8e-08
WP_000065257.1|2725502_2725850_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000469804.1|2725890_2726658_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_000043266.1|2726702_2727251_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000256453.1|2727269_2727518_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_000460052.1|2727770_2729132_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_001537507.1|2729297_2730089_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_127172650.1|2730108_2731395_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_001294018.1|2731515_2732121_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001518875.1|2732155_2732746_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_001059155.1|2732869_2733748_+	NAD(+) kinase	NA	NA	NA	NA	NA
WP_000880958.1|2733833_2735495_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001203445.1|2735643_2735982_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_001112990.1|2736147_2736438_-	RnfH family protein	NA	NA	NA	NA	NA
WP_000242603.1|2736427_2736904_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_001518569.1|2737053_2737536_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
WP_001237691.1|2738150_2749625_+	biofilm-associated protein BapA	NA	NA	NA	NA	NA
WP_000533865.1|2749689_2751099_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_000196133.1|2751095_2753276_+	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	1.3e-18
WP_072101449.1|2753283_2754447_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_000980498.1|2754998_2755217_-	hypothetical protein	NA	Q53ZE7	Salmonella_virus	100.0	2.1e-38
WP_006501166.1|2755285_2756386_-	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	95.6	9.0e-194
WP_000980409.1|2756382_2756868_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	99.2	8.3e-67
WP_006501165.1|2756864_2759672_-|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	98.3	0.0e+00
WP_000763316.1|2759664_2759784_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	100.0	1.8e-15
WP_001280962.1|2759798_2760101_-|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	100.0	2.5e-45
WP_001207653.1|2760155_2760671_-|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
WP_006501164.1|2760680_2761853_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	3.7e-222
WP_006501163.1|2761955_2762513_-	serine-type DNA invertase Fin	NA	A0A1S6L009	Salmonella_phage	98.9	9.4e-99
>prophage 6
NZ_CP025454	Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76334 chromosome, complete genome	4762732	2766131	2789823	4762732	integrase,terminase,head,capsid,plate,portal,lysis,tail	Salmonella_phage(93.33%)	34	2771518:2771533	2799412:2799427
WP_001086802.1|2766131_2766737_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	98.5	1.1e-116
WP_006493508.1|2766729_2767638_-|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.7	7.2e-157
WP_006493507.1|2767624_2767984_-|plate	baseplate assembly protein W	plate	E5G6N7	Salmonella_phage	92.4	6.3e-56
WP_000993750.1|2767980_2768559_-|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	99.0	1.5e-107
WP_000343939.1|2768627_2769074_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	89.7	3.8e-66
WP_001039964.1|2769066_2769498_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	95.1	4.0e-73
WP_001648763.1|2769593_2770022_-|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	95.0	2.6e-64
WP_000871620.1|2770018_2770393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006493502.1|2770397_2770907_-	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.6	3.2e-93
WP_000171565.1|2770887_2771103_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	100.0	5.9e-33
WP_000868184.1|2771106_2771310_-|tail	tail protein X	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
WP_000673541.1|2771309_2771774_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	96.8	7.9e-83
2771518:2771533	attL	TTGCCGTCCAGCATAT	NA	NA	NA	NA
WP_000059169.1|2771867_2772518_-	hypothetical protein	NA	A0A1S6KZX1	Salmonella_phage	98.6	1.6e-113
WP_000730754.1|2772521_2773589_-|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	98.0	2.8e-192
WP_006493498.1|2773605_2774439_-|capsid	GPO family capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	97.1	1.1e-127
WP_006493495.1|2774581_2776348_+|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	96.6	0.0e+00
WP_006493493.1|2776347_2777382_+|portal	phage portal protein	portal	E5G6M3	Salmonella_phage	94.8	4.1e-188
WP_006493491.1|2777428_2778346_-	restriction endonuclease	NA	NA	NA	NA	NA
WP_006493490.1|2778308_2779511_-	DNA cytosine methyltransferase	NA	M1PSQ0	Streptococcus_phage	37.1	5.6e-64
WP_001749760.1|2779841_2780030_-	hypothetical protein	NA	E5G6M0	Salmonella_phage	91.7	5.7e-24
WP_001749759.1|2780167_2780395_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006493489.1|2780414_2782808_-	replication endonuclease	NA	A0A1S6L028	Salmonella_phage	88.8	0.0e+00
WP_006493488.1|2782804_2783662_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	69.8	4.6e-113
WP_000785514.1|2783658_2783886_-	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	66.7	5.4e-21
WP_001178763.1|2783885_2784113_-	DUF2732 domain-containing protein	NA	A0A0M3UL87	Salmonella_phage	64.0	8.1e-17
WP_000963476.1|2784180_2784522_-	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	84.1	6.0e-48
WP_001528723.1|2784485_2784680_-	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	84.1	5.3e-25
WP_000794278.1|2784764_2785040_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006493486.1|2785126_2785636_-	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	93.5	3.5e-84
WP_000102106.1|2785668_2785911_-	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
WP_023136550.1|2786030_2786663_+	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	96.7	5.8e-113
WP_006493482.1|2786664_2787681_+|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	95.0	5.0e-191
WP_006493480.1|2787687_2788914_+	hypothetical protein	NA	E5G6K9	Salmonella_phage	65.4	3.6e-151
WP_001650427.1|2789241_2789823_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	A0A1B5FPC6	Escherichia_phage	55.8	1.5e-51
2799412:2799427	attR	ATATGCTGGACGGCAA	NA	NA	NA	NA
>prophage 7
NZ_CP025454	Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76334 chromosome, complete genome	4762732	4302947	4323369	4762732	plate,tail	Burkholderia_phage(45.0%)	25	NA	NA
WP_000587738.1|4302947_4303676_-	hypothetical protein	NA	A0A077SLK3	Escherichia_phage	37.3	5.6e-35
WP_000084338.1|4304413_4304869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023785434.1|4304865_4305471_-	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
WP_001747515.1|4305475_4307221_-|tail	tail protein	tail	A0A0M3ULF6	Salmonella_phage	51.7	1.2e-51
WP_000359502.1|4307223_4307856_-|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	1.1e-23
WP_000951740.1|4307848_4308964_-|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	51.2	2.9e-99
WP_001093501.1|4308954_4309314_-|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
WP_000632050.1|4309477_4311025_-	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.9	2.5e-48
WP_000703629.1|4311024_4311954_-	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	84.1	7.9e-151
WP_000593184.1|4311950_4312313_-	GtrA family protein	NA	U5P0S6	Shigella_phage	70.8	9.6e-44
WP_000679392.1|4312640_4313363_-|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
WP_000818151.1|4313372_4314416_-	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	45.3	8.5e-77
WP_001269716.1|4314403_4314613_-	membrane protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
WP_000271418.1|4314612_4315566_-	chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	3.9e-36
WP_001262488.1|4315565_4317920_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.6	3.1e-66
WP_001185654.1|4318016_4318145_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_001003644.1|4318104_4318422_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000907494.1|4318473_4318998_-|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
WP_000729845.1|4318997_4320425_-|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	71.6	2.8e-195
WP_000875314.1|4320414_4320612_-	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
WP_000449437.1|4320608_4321064_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000777266.1|4321222_4321537_-	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
WP_001270445.1|4321549_4322155_-	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	61.0	5.9e-62
WP_001226439.1|4322157_4322445_-	membrane protein	NA	Q6QIC8	Burkholderia_phage	48.1	3.0e-16
WP_000615248.1|4323021_4323369_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
>prophage 8
NZ_CP025454	Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76334 chromosome, complete genome	4762732	4599287	4643668	4762732	transposase,tRNA,integrase,tail	Enterobacteria_phage(18.18%)	47	4625085:4625100	4641632:4641647
WP_000252549.1|4599287_4599734_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_000047544.1|4599808_4600195_-	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA	NA
WP_000148570.1|4600271_4600733_-	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_000013055.1|4600745_4601681_-	aspartate carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	39.2	6.5e-52
WP_000249504.1|4601716_4601818_-	pyr operon leader peptide	NA	NA	NA	NA	NA
WP_001518160.1|4601797_4601938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000666051.1|4601907_4602396_-	arginine repressor	NA	NA	NA	NA	NA
WP_000514438.1|4602582_4603986_-	YfcC family protein	NA	NA	NA	NA	NA
WP_000237031.1|4604041_4605046_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_000428749.1|4605157_4606090_-	carbamate kinase	NA	NA	NA	NA	NA
WP_000410847.1|4606100_4607321_-	arginine deiminase	NA	NA	NA	NA	NA
WP_000583453.1|4607996_4608449_+	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA	NA
WP_000103041.1|4608522_4609527_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_000002940.1|4609692_4610109_+	ribonuclease E inhibitor RraB	NA	NA	NA	NA	NA
WP_000218447.1|4610120_4610933_+|tRNA	tRNA isopentenyl-2-thiomethyl-A-37 hydroxylase MiaE	tRNA	NA	NA	NA	NA
WP_000826193.1|4611177_4611666_-	DUF3617 domain-containing protein	NA	NA	NA	NA	NA
WP_001747736.1|4611773_4612277_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001066989.1|4612471_4613659_+	DUF898 domain-containing protein	NA	NA	NA	NA	NA
WP_000416337.1|4613800_4616656_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.4	9.3e-142
WP_000190703.1|4616655_4617138_-	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
WP_000397158.1|4617235_4618747_-	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	38.7	8.3e-49
WP_000584132.1|4619140_4620241_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA	NA
WP_001182242.1|4620240_4621323_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_001244060.1|4621518_4622517_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_001128356.1|4622580_4623900_-	gnt-II system L-idonate transporter	NA	NA	NA	NA	NA
WP_000998688.1|4623961_4624726_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_000453362.1|4624750_4625782_-	L-idonate 5-dehydrogenase	NA	NA	NA	NA	NA
4625085:4625100	attL	TTTTCTGCTTTCCAGC	NA	NA	NA	NA
WP_000896759.1|4625998_4626529_+	gluconokinase	NA	NA	NA	NA	NA
WP_000152567.1|4626556_4627576_-	NAD(P)-dependent alcohol dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	30.5	3.9e-42
WP_000772651.1|4628047_4629310_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	Q7M297	Enterobacteria_phage	35.6	2.8e-66
WP_001066528.1|4629340_4629979_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000455466.1|4630349_4630580_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_071591111.1|4630641_4631226_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA	NA
WP_001247004.1|4631218_4631578_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001027149.1|4631609_4631894_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001075576.1|4631890_4632274_+	DUF5375 family protein	NA	NA	NA	NA	NA
WP_000211874.1|4632270_4634943_+	DUF927 domain-containing protein	NA	A0A1B0VP75	Pseudomonas_phage	34.4	2.1e-58
WP_001066192.1|4635343_4636105_+	septation initiation protein	NA	NA	NA	NA	NA
WP_001185338.1|4636104_4636377_+	ogr/Delta-like zinc finger family protein	NA	A0A2I8TV89	Erwinia_phage	46.9	6.3e-08
WP_006501160.1|4636554_4636734_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001292737.1|4636753_4637065_+|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	66.0	2.4e-27
WP_001747644.1|4637079_4637199_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.2e-13
WP_001280979.1|4637191_4639825_+|tail	phage tail tape measure protein	tail	E5FFG5	Burkholderia_phage	31.3	5.8e-106
WP_000254751.1|4641126_4641375_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_000016244.1|4641483_4641723_+	type II toxin-antitoxin system CcdA family antitoxin	NA	NA	NA	NA	NA
4641632:4641647	attR	GCTGGAAAGCAGAAAA	NA	NA	NA	NA
WP_001199743.1|4641725_4642034_+	CcdB family protein	NA	NA	NA	NA	NA
WP_096322988.1|4642413_4643668_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	34.5	2.2e-18
