The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP025449	Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76337 chromosome, complete genome	4763925	931150	940497	4763925	protease,integrase	Dickeya_phage(16.67%)	9	932401:932415	946061:946075
WP_001201750.1|931150_932269_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
WP_000125885.1|932265_934212_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	41.9	2.0e-39
932401:932415	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
WP_000447499.1|934341_934563_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000520789.1|934886_935207_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000934057.1|935237_937514_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	1.1e-164
WP_071591100.1|937709_938039_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001747668.1|938010_938487_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001117984.1|939760_939958_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001747671.1|940119_940497_-|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	40.2	1.0e-19
946061:946075	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
>prophage 2
NZ_CP025449	Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76337 chromosome, complete genome	4763925	1084736	1121972	4763925	plate,transposase	Enterobacteria_phage(20.0%)	29	NA	NA
WP_100148601.1|1084736_1085992_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	33.9	2.4e-17
WP_000623370.1|1086272_1086731_-	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
WP_001227394.1|1086854_1087226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001022123.1|1087234_1087675_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000928422.1|1087694_1088207_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_001216386.1|1088247_1088694_-	DUF1240 domain-containing protein	NA	NA	NA	NA	NA
WP_006496204.1|1088722_1088854_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001139255.1|1091138_1091981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000002328.1|1092004_1092484_-	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_000076070.1|1092502_1093864_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001137105.1|1093874_1097336_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
WP_000365805.1|1097414_1098827_-	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_000089147.1|1098828_1099566_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA	NA
WP_000614296.1|1099562_1102298_-	type VI secretion system ATPase TssH	NA	K4FB40	Cronobacter_phage	31.5	2.9e-84
WP_000343978.1|1102310_1103069_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
WP_000246455.1|1103073_1104405_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_130549539.1|1104407_1104911_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_000796942.1|1104937_1106224_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
WP_000509052.1|1106248_1107337_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_000393863.1|1107300_1109154_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_000611701.1|1109158_1109575_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_006496106.1|1109571_1111044_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_000524265.1|1111092_1111305_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000031252.1|1111334_1111838_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_001142966.1|1112466_1112985_+	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_006496101.1|1113207_1115349_+	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	25.8	3.5e-24
WP_000014621.1|1115417_1119584_+	RHS repeat protein	NA	A0A2H4JFP5	uncultured_Caudovirales_phage	40.6	1.4e-21
WP_000739389.1|1119651_1120617_+	Sel1 repeat protein	NA	NA	NA	NA	NA
WP_109188131.1|1120810_1121972_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	40.8	1.2e-47
>prophage 3
NZ_CP025449	Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76337 chromosome, complete genome	4763925	2128503	2139010	4763925		Enterobacteria_phage(37.5%)	10	NA	NA
WP_000126349.1|2128503_2129817_-	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
WP_000565903.1|2129843_2130923_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	1.7e-16
WP_000648785.1|2130927_2131701_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000018219.1|2131716_2132691_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000973710.1|2132696_2133248_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	1.3e-52
WP_000857531.1|2133248_2134127_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	2.1e-108
WP_001023665.1|2134174_2135074_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	1.1e-29
WP_000697849.1|2135073_2136159_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.6	1.0e-101
WP_000981469.1|2136535_2137429_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_001111843.1|2137606_2139010_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	3.1e-21
>prophage 4
NZ_CP025449	Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76337 chromosome, complete genome	4763925	2215040	2224211	4763925	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000195330.1|2215040_2217074_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
WP_000703143.1|2217314_2217773_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	71.9	2.4e-52
WP_001197951.1|2217944_2218475_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950413.1|2218531_2218999_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000598637.1|2219045_2219765_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272851.1|2219761_2221447_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	6.2e-279
WP_001240418.1|2221669_2222401_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|2222460_2222568_+	protein YohO	NA	NA	NA	NA	NA
WP_000824850.1|2222548_2223280_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569166.1|2223263_2224211_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
>prophage 5
NZ_CP025449	Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76337 chromosome, complete genome	4763925	2693672	2791009	4763925	plate,tRNA,lysis,tail,portal,integrase,capsid,terminase,head	Salmonella_phage(73.58%)	91	2772704:2772719	2800598:2800613
WP_000083343.1|2693672_2694410_-|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	tRNA	NA	NA	NA	NA
WP_000219174.1|2694540_2695875_+	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
WP_001747585.1|2695892_2696792_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000188414.1|2696894_2697482_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA	NA
WP_000627811.1|2697543_2697927_-	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
WP_000179975.1|2698245_2698935_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	50.0	2.1e-55
WP_000997368.1|2699050_2700088_-|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
WP_001098732.1|2700291_2700711_+	thioredoxin TrxC	NA	A0A0K2FIM3	Achromobacter_phage	40.6	1.2e-16
WP_000183644.1|2700783_2701464_+	DTW domain-containing protein	NA	NA	NA	NA	NA
WP_000082651.1|2701517_2704178_+	protein lysine acetyltransferase	NA	NA	NA	NA	NA
WP_000949286.1|2704292_2705648_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_001264468.1|2705690_2706014_+	YfiM family lipoprotein	NA	NA	NA	NA	NA
WP_000807814.1|2706010_2707312_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	30.1	3.4e-43
WP_000985658.1|2707415_2707871_-	DUF4385 domain-containing protein	NA	E3SMI8	Prochlorococcus_phage	49.3	8.6e-34
WP_001235092.1|2713926_2716500_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.5	2.6e-127
WP_000992634.1|2716629_2717361_-	polyphenol oxidase	NA	NA	NA	NA	NA
WP_000079130.1|2717357_2718338_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_000197660.1|2718469_2719207_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_000178449.1|2719478_2719817_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_010989056.1|2719920_2719968_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000200080.1|2720067_2721228_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_000210991.1|2721188_2722097_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
WP_000225191.1|2722154_2723276_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_006496406.1|2723285_2724356_-	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.8	1.1e-90
WP_001212379.1|2724795_2725314_+	YfiR family protein	NA	NA	NA	NA	NA
WP_001030981.1|2725306_2726527_+	diguanylate cyclase DgcN	NA	A0A2K8I9Y5	Pseudomonas_phage	36.2	5.8e-08
WP_000065257.1|2726683_2727031_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000469804.1|2727071_2727839_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_000043266.1|2727883_2728432_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000256453.1|2728450_2728699_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_000460052.1|2728951_2730313_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_001537507.1|2730478_2731270_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_127172650.1|2731289_2732576_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_001294018.1|2732696_2733302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001518875.1|2733336_2733927_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_001059155.1|2734050_2734929_+	NAD(+) kinase	NA	NA	NA	NA	NA
WP_000880958.1|2735014_2736676_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001203445.1|2736824_2737163_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_001112990.1|2737328_2737619_-	RnfH family protein	NA	NA	NA	NA	NA
WP_000242603.1|2737608_2738085_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_001518569.1|2738234_2738717_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
WP_001237691.1|2739331_2750806_+	biofilm-associated protein BapA	NA	NA	NA	NA	NA
WP_000533865.1|2750870_2752280_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_000196133.1|2752276_2754457_+	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	1.3e-18
WP_072101449.1|2754464_2755628_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_000980498.1|2756179_2756398_-	hypothetical protein	NA	Q53ZE7	Salmonella_virus	100.0	2.1e-38
WP_006501166.1|2756466_2757567_-	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	95.6	9.0e-194
WP_000980409.1|2757563_2758049_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	99.2	8.3e-67
WP_006501165.1|2758045_2760853_-|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	98.3	0.0e+00
WP_000763316.1|2760845_2760965_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	100.0	1.8e-15
WP_001280962.1|2760979_2761282_-|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	100.0	2.5e-45
WP_001207653.1|2761336_2761852_-|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
WP_006501164.1|2761861_2763034_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	3.7e-222
WP_006501163.1|2763136_2763694_-	serine-type DNA invertase Fin	NA	A0A1S6L009	Salmonella_phage	98.9	9.4e-99
WP_077918804.1|2763663_2764743_+	hypothetical protein	NA	A0A1B0V7G4	Salmonella_phage	91.8	1.2e-182
WP_001287104.1|2764749_2765157_+|tail	tail assembly protein	tail	A0A1B0V844	Salmonella_phage	85.2	6.7e-62
WP_006501158.1|2765160_2765778_-|tail	tail fiber assembly protein	tail	A0A1B0VCD0	Salmonella_phage	84.1	1.6e-94
WP_001086802.1|2767317_2767923_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	98.5	1.1e-116
WP_006493508.1|2767915_2768824_-|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.7	7.2e-157
WP_006493507.1|2768810_2769170_-|plate	baseplate assembly protein W	plate	E5G6N7	Salmonella_phage	92.4	6.3e-56
WP_000993750.1|2769166_2769745_-|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	99.0	1.5e-107
WP_000343939.1|2769813_2770260_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	89.7	3.8e-66
WP_001039964.1|2770252_2770684_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	95.1	4.0e-73
WP_001648763.1|2770779_2771208_-|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	95.0	2.6e-64
WP_000871620.1|2771204_2771579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006493502.1|2771583_2772093_-	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.6	3.2e-93
WP_000171565.1|2772073_2772289_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	100.0	5.9e-33
WP_000868184.1|2772292_2772496_-|tail	tail protein X	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
WP_000673541.1|2772495_2772960_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	96.8	7.9e-83
2772704:2772719	attL	TTGCCGTCCAGCATAT	NA	NA	NA	NA
WP_000059169.1|2773053_2773704_-	hypothetical protein	NA	A0A1S6KZX1	Salmonella_phage	98.6	1.6e-113
WP_000730754.1|2773707_2774775_-|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	98.0	2.8e-192
WP_006493498.1|2774791_2775625_-|capsid	GPO family capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	97.1	1.1e-127
WP_006493495.1|2775767_2777534_+|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	96.6	0.0e+00
WP_006493493.1|2777533_2778568_+|portal	phage portal protein	portal	E5G6M3	Salmonella_phage	94.8	4.1e-188
WP_006493491.1|2778614_2779532_-	restriction endonuclease	NA	NA	NA	NA	NA
WP_006493490.1|2779494_2780697_-	DNA cytosine methyltransferase	NA	M1PSQ0	Streptococcus_phage	37.1	5.6e-64
WP_001749760.1|2781027_2781216_-	hypothetical protein	NA	E5G6M0	Salmonella_phage	91.7	5.7e-24
WP_001749759.1|2781353_2781581_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006493489.1|2781600_2783994_-	replication endonuclease	NA	A0A1S6L028	Salmonella_phage	88.8	0.0e+00
WP_006493488.1|2783990_2784848_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	69.8	4.6e-113
WP_000785514.1|2784844_2785072_-	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	66.7	5.4e-21
WP_001178763.1|2785071_2785299_-	DUF2732 domain-containing protein	NA	A0A0M3UL87	Salmonella_phage	64.0	8.1e-17
WP_000963476.1|2785366_2785708_-	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	84.1	6.0e-48
WP_001528723.1|2785671_2785866_-	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	84.1	5.3e-25
WP_000794278.1|2785950_2786226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006493486.1|2786312_2786822_-	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	93.5	3.5e-84
WP_000102106.1|2786854_2787097_-	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
WP_023136550.1|2787216_2787849_+	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	96.7	5.8e-113
WP_006493482.1|2787850_2788867_+|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	95.0	5.0e-191
WP_006493480.1|2788873_2790100_+	hypothetical protein	NA	E5G6K9	Salmonella_phage	65.4	3.6e-151
WP_001650427.1|2790427_2791009_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	A0A1B5FPC6	Escherichia_phage	55.8	1.5e-51
2800598:2800613	attR	ATATGCTGGACGGCAA	NA	NA	NA	NA
>prophage 6
NZ_CP025449	Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76337 chromosome, complete genome	4763925	4304142	4324564	4763925	plate,tail	Burkholderia_phage(45.0%)	25	NA	NA
WP_000587738.1|4304142_4304871_-	hypothetical protein	NA	A0A077SLK3	Escherichia_phage	37.3	5.6e-35
WP_000084338.1|4305608_4306064_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023785434.1|4306060_4306666_-	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
WP_001747515.1|4306670_4308416_-|tail	tail protein	tail	A0A0M3ULF6	Salmonella_phage	51.7	1.2e-51
WP_000359502.1|4308418_4309051_-|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	1.1e-23
WP_000951740.1|4309043_4310159_-|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	51.2	2.9e-99
WP_001093501.1|4310149_4310509_-|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
WP_000632050.1|4310672_4312220_-	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.9	2.5e-48
WP_000703629.1|4312219_4313149_-	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	84.1	7.9e-151
WP_000593184.1|4313145_4313508_-	GtrA family protein	NA	U5P0S6	Shigella_phage	70.8	9.6e-44
WP_000679392.1|4313835_4314558_-|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
WP_000818151.1|4314567_4315611_-	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	45.3	8.5e-77
WP_001269716.1|4315598_4315808_-	membrane protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
WP_000271418.1|4315807_4316761_-	chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	3.9e-36
WP_001262488.1|4316760_4319115_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.6	3.1e-66
WP_001185654.1|4319211_4319340_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_001003644.1|4319299_4319617_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000907494.1|4319668_4320193_-|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
WP_000729845.1|4320192_4321620_-|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	71.6	2.8e-195
WP_000875314.1|4321609_4321807_-	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
WP_000449437.1|4321803_4322259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000777266.1|4322417_4322732_-	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
WP_001270445.1|4322744_4323350_-	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	61.0	5.9e-62
WP_001226439.1|4323352_4323640_-	membrane protein	NA	Q6QIC8	Burkholderia_phage	48.1	3.0e-16
WP_000615248.1|4324216_4324564_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
>prophage 7
NZ_CP025449	Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76337 chromosome, complete genome	4763925	4600482	4644863	4763925	integrase,transposase,tRNA,tail	Enterobacteria_phage(18.18%)	47	4626280:4626295	4642827:4642842
WP_000252549.1|4600482_4600929_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_000047544.1|4601003_4601390_-	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA	NA
WP_000148570.1|4601466_4601928_-	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_000013055.1|4601940_4602876_-	aspartate carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	39.2	6.5e-52
WP_000249504.1|4602911_4603013_-	pyr operon leader peptide	NA	NA	NA	NA	NA
WP_001518160.1|4602992_4603133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000666051.1|4603102_4603591_-	arginine repressor	NA	NA	NA	NA	NA
WP_000514438.1|4603777_4605181_-	YfcC family protein	NA	NA	NA	NA	NA
WP_000237031.1|4605236_4606241_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_000428749.1|4606352_4607285_-	carbamate kinase	NA	NA	NA	NA	NA
WP_000410847.1|4607295_4608516_-	arginine deiminase	NA	NA	NA	NA	NA
WP_000583453.1|4609191_4609644_+	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA	NA
WP_000103041.1|4609717_4610722_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_000002940.1|4610887_4611304_+	ribonuclease E inhibitor RraB	NA	NA	NA	NA	NA
WP_000218447.1|4611315_4612128_+|tRNA	tRNA isopentenyl-2-thiomethyl-A-37 hydroxylase MiaE	tRNA	NA	NA	NA	NA
WP_000826193.1|4612372_4612861_-	DUF3617 domain-containing protein	NA	NA	NA	NA	NA
WP_001747736.1|4612968_4613472_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001066989.1|4613666_4614854_+	DUF898 domain-containing protein	NA	NA	NA	NA	NA
WP_000416337.1|4614995_4617851_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.4	9.3e-142
WP_000190703.1|4617850_4618333_-	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
WP_000397158.1|4618430_4619942_-	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	38.7	8.3e-49
WP_000584132.1|4620335_4621436_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA	NA
WP_001182242.1|4621435_4622518_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_001244060.1|4622713_4623712_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_001128356.1|4623775_4625095_-	gnt-II system L-idonate transporter	NA	NA	NA	NA	NA
WP_000998688.1|4625156_4625921_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_000453362.1|4625945_4626977_-	L-idonate 5-dehydrogenase	NA	NA	NA	NA	NA
4626280:4626295	attL	TTTTCTGCTTTCCAGC	NA	NA	NA	NA
WP_000896759.1|4627193_4627724_+	gluconokinase	NA	NA	NA	NA	NA
WP_000152567.1|4627751_4628771_-	NAD(P)-dependent alcohol dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	30.5	3.9e-42
WP_000772651.1|4629242_4630505_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	Q7M297	Enterobacteria_phage	35.6	2.8e-66
WP_001066528.1|4630535_4631174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000455466.1|4631544_4631775_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_071591111.1|4631836_4632421_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA	NA
WP_001247004.1|4632413_4632773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001027149.1|4632804_4633089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001075576.1|4633085_4633469_+	DUF5375 family protein	NA	NA	NA	NA	NA
WP_000211874.1|4633465_4636138_+	DUF927 domain-containing protein	NA	A0A1B0VP75	Pseudomonas_phage	34.4	2.1e-58
WP_001066192.1|4636538_4637300_+	septation initiation protein	NA	NA	NA	NA	NA
WP_001185338.1|4637299_4637572_+	ogr/Delta-like zinc finger family protein	NA	A0A2I8TV89	Erwinia_phage	46.9	6.3e-08
WP_006501160.1|4637749_4637929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001292737.1|4637948_4638260_+|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	66.0	2.4e-27
WP_001747644.1|4638274_4638394_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.2e-13
WP_001280979.1|4638386_4641020_+|tail	phage tail tape measure protein	tail	E5FFG5	Burkholderia_phage	31.3	5.8e-106
WP_000254751.1|4642321_4642570_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_000016244.1|4642678_4642918_+	type II toxin-antitoxin system CcdA family antitoxin	NA	NA	NA	NA	NA
4642827:4642842	attR	GCTGGAAAGCAGAAAA	NA	NA	NA	NA
WP_001199743.1|4642920_4643229_+	CcdB family protein	NA	NA	NA	NA	NA
WP_096322988.1|4643608_4644863_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	34.5	2.2e-18
