assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006151925.1_ASM615192v1	NZ_CP040782	Bacillus thuringiensis strain HM-311 chromosome, complete genome	1	1442800-1443455	1	CRT	no		cas3,cas14k,csa3,WYL,c2c9_V-U4,c2c10_CAS-V-U3,DinG,DEDDh	Orphan	CCNGTAGCNCCAGTAGCACCNGCTGG	26	3	7	1442826-1442844|1442871-1442889|1443339-1443357|1443339-1443357|1443339-1443357|1443339-1443357|1443339-1443357	NZ_CP040782.1_5345571-5345553|NZ_CP040782.1_5345571-5345553|NZ_CP040782.1_3679483-3679465|NZ_CP040782.1_3679573-3679555|NZ_CP040782.1_3679708-3679690|NZ_CP040782.1_3680392-3680374|NZ_CP040782.1_3680527-3680509	NA	12	12	Orphan	cas3,cas14k,csa3,WYL,c2c9_V-U4,c2c10_CAS-V-U3,DinG,DEDDh,cas14j	NA|173aa|up_8|NZ_CP040782.1_1433628_1434147_+,NA|76aa|up_5|NZ_CP040782.1_1436215_1436443_+,NA|143aa|up_0|NZ_CP040782.1_1441763_1442192_-,NA|263aa|down_6|NZ_CP040782.1_1450479_1451268_+,NA|130aa|down_8|NZ_CP040782.1_1454034_1454424_+	NA|366aa|up_9|NZ_CP040782.1_1432416_1433514_+	cd06160, S2P-M50_like_2, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms	NA|173aa|up_8|NZ_CP040782.1_1433628_1434147_+	NA	NA|403aa|up_7|NZ_CP040782.1_1434306_1435515_+	PRK13289, PRK13289, NO-inducible flavohemoprotein	NA|171aa|up_6|NZ_CP040782.1_1435532_1436045_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|76aa|up_5|NZ_CP040782.1_1436215_1436443_+	NA	NA|267aa|up_4|NZ_CP040782.1_1436736_1437537_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|333aa|up_3|NZ_CP040782.1_1437654_1438653_-	pfam01384, PHO4, Phosphate transporter family	NA|207aa|up_2|NZ_CP040782.1_1438664_1439285_-	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]	NA|681aa|up_1|NZ_CP040782.1_1439596_1441639_+	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|143aa|up_0|NZ_CP040782.1_1441763_1442192_-	NA	NA|424aa|down_0|NZ_CP040782.1_1444180_1445452_-	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|282aa|down_1|NZ_CP040782.1_1445608_1446454_+	COG1801, COG1801, Uncharacterized conserved protein [Function unknown]	NA|65aa|down_2|NZ_CP040782.1_1446668_1446863_-	pfam13062, DUF3924, Protein of unknown function (DUF3924)	NA|177aa|down_3|NZ_CP040782.1_1446984_1447515_-	cd01192, INT_C_like_3, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|605aa|down_4|NZ_CP040782.1_1447622_1449437_-	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|236aa|down_5|NZ_CP040782.1_1449594_1450302_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|263aa|down_6|NZ_CP040782.1_1450479_1451268_+	NA	NA|860aa|down_7|NZ_CP040782.1_1451272_1453852_-	COG2898, COG2898, Uncharacterized conserved protein [Function unknown]	NA|130aa|down_8|NZ_CP040782.1_1454034_1454424_+	NA	NA|164aa|down_9|NZ_CP040782.1_1454446_1454938_+	pfam13047, DUF3907, Protein of unknown function (DUF3907)
GCF_006151925.1_ASM615192v1	NZ_CP040782	Bacillus thuringiensis strain HM-311 chromosome, complete genome	2	4959773-4959896	1	CRISPRCasFinder	no		cas3,cas14k,csa3,WYL,c2c9_V-U4,c2c10_CAS-V-U3,DinG,DEDDh	Orphan	CATCGGTTTCTTCCTACCGAACATACAGCTTAAACAAACGTTT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,cas14k,csa3,WYL,c2c9_V-U4,c2c10_CAS-V-U3,DinG,DEDDh,cas14j	NA|115aa|up_4|NZ_CP040782.1_4957323_4957668_-,NA|176aa|down_0|NZ_CP040782.1_4959935_4960463_-,NA|62aa|down_5|NZ_CP040782.1_4963813_4963999_-	NA|262aa|up_9|NZ_CP040782.1_4952438_4953224_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|269aa|up_8|NZ_CP040782.1_4953462_4954269_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|271aa|up_7|NZ_CP040782.1_4954339_4955152_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|222aa|up_6|NZ_CP040782.1_4955175_4955841_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_5|NZ_CP040782.1_4955833_4956859_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|115aa|up_4|NZ_CP040782.1_4957323_4957668_-	NA	NA|100aa|up_3|NZ_CP040782.1_4957820_4958120_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|115aa|up_2|NZ_CP040782.1_4958132_4958477_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|128aa|up_1|NZ_CP040782.1_4958732_4959116_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|122aa|up_0|NZ_CP040782.1_4959157_4959523_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|176aa|down_0|NZ_CP040782.1_4959935_4960463_-	NA	NA|216aa|down_1|NZ_CP040782.1_4960606_4961254_+	cd03386, PAP2_Aur1_like, PAP2_like proteins, Aur1_like subfamily	NA|338aa|down_2|NZ_CP040782.1_4961319_4962333_-	pfam13303, PTS_EIIC_2, Phosphotransferase system, EIIC	NA|390aa|down_3|NZ_CP040782.1_4962355_4963525_-	cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases	NA|83aa|down_4|NZ_CP040782.1_4963551_4963800_-	pfam07875, Coat_F, Coat F domain	NA|62aa|down_5|NZ_CP040782.1_4963813_4963999_-	NA	NA|183aa|down_6|NZ_CP040782.1_4964804_4965353_-	pfam13305, WHG, WHG domain	NA|241aa|down_7|NZ_CP040782.1_4965356_4966079_-	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	NA|601aa|down_8|NZ_CP040782.1_4966217_4968020_-	cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase	NA|391aa|down_9|NZ_CP040782.1_4968350_4969523_-	PRK07661, PRK07661, acetyl-CoA C-acetyltransferase
GCF_006151925.1_ASM615192v1	NZ_CP040782	Bacillus thuringiensis strain HM-311 chromosome, complete genome	3	5271580-5271713	2	CRISPRCasFinder	no		cas3,cas14k,csa3,WYL,c2c9_V-U4,c2c10_CAS-V-U3,DinG,DEDDh	Orphan	GTTGATTTCTCTTCTTTTTGAGA	23	0	0	NA	NA	NA	2	2	Orphan	cas3,cas14k,csa3,WYL,c2c9_V-U4,c2c10_CAS-V-U3,DinG,DEDDh,cas14j	NA|45aa|up_0|NZ_CP040782.1_5271257_5271392_-,NA	NA|603aa|up_9|NZ_CP040782.1_5262065_5263874_-	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|294aa|up_8|NZ_CP040782.1_5263934_5264816_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|256aa|up_7|NZ_CP040782.1_5265057_5265825_-	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|234aa|up_6|NZ_CP040782.1_5265937_5266639_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|248aa|up_5|NZ_CP040782.1_5266628_5267372_-	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|226aa|up_4|NZ_CP040782.1_5267632_5268310_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|145aa|up_3|NZ_CP040782.1_5268651_5269086_-	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ	NA|334aa|up_2|NZ_CP040782.1_5269514_5270516_-	PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional	NA|91aa|up_1|NZ_CP040782.1_5270676_5270949_-	pfam12116, SpoIIID, Stage III sporulation protein D	NA|45aa|up_0|NZ_CP040782.1_5271257_5271392_-	NA	NA|236aa|down_0|NZ_CP040782.1_5272601_5273309_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|281aa|down_1|NZ_CP040782.1_5273308_5274151_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|336aa|down_2|NZ_CP040782.1_5274332_5275340_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|340aa|down_3|NZ_CP040782.1_5275437_5276457_-	TIGR02870, Stage_II_sporulation_protein_D, stage II sporulation protein D	NA|435aa|down_4|NZ_CP040782.1_5276663_5277968_-	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|237aa|down_5|NZ_CP040782.1_5278007_5278718_-	pfam08680, DUF1779, TATA-box binding	NA|79aa|down_6|NZ_CP040782.1_5278763_5279000_-	COG4836, COG4836, Predicted membrane protein [Function unknown]	NA|507aa|down_7|NZ_CP040782.1_5279202_5280723_-	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN	NA|501aa|down_8|NZ_CP040782.1_5280724_5282227_-	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed	NA|621aa|down_9|NZ_CP040782.1_5282223_5284086_-	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed
