assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006113225.1_ASM611322v2	NZ_CP053416	Salmonella bongori strain 85-0051 chromosome, complete genome	1	845792-845878	1	CRISPRCasFinder	no		DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,DinG,cas14j,c2c9_V-U4	Orphan	ATCGATTGTCTTCCGGCTATTATCACGCAC	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,DinG,cas14j,c2c9_V-U4	NA|86aa|up_1|NZ_CP053416.1_844195_844453_-,NA	NA|102aa|up_9|NZ_CP053416.1_836522_836828_-	PRK15325, PRK15325, type III secretion system inner rod protein PrgJ	NA|80aa|up_8|NZ_CP053416.1_836846_837086_-	PRK15326, PRK15326, type III secretion system needle complex protein	NA|393aa|up_7|NZ_CP053416.1_837109_838288_-	PRK15327, PRK15327, PrgH/EprH family type III secretion inner membrane ring protein	NA|310aa|up_6|NZ_CP053416.1_838604_839534_+	PRK15185, PRK15185, transcriptional regulator HilD; Provisional	NA|554aa|up_5|NZ_CP053416.1_840648_842310_+	PRK12370, PRK12370, HilA/EilA family virulence transcriptional regulator	NA|161aa|up_4|NZ_CP053416.1_842327_842810_+	PRK15328, PRK15328, type III secretion system invasion protein IagB	NA|289aa|up_3|NZ_CP053416.1_842867_843734_-	PRK15375, PRK15375, type III secretion system effector GTPase-activating protein SptP	NA|131aa|up_2|NZ_CP053416.1_843768_844161_-	PRK15329, PRK15329, chaperone SicP	NA|86aa|up_1|NZ_CP053416.1_844195_844453_-	NA	NA|83aa|up_0|NZ_CP053416.1_844493_844742_-	PRK08172, PRK08172, acyl carrier protein	NA|341aa|down_0|NZ_CP053416.1_846892_847915_-	PRK15330, PRK15330, type III secretion system needle tip protein SipD	NA|410aa|down_1|NZ_CP053416.1_847985_849215_-	PRK15373, PRK15373, IpaC/SipC family type III secretion system needle tip complex protein	NA|594aa|down_2|NZ_CP053416.1_849242_851024_-	PRK15374, PRK15374, type III secretion system needle tip complex protein SipB	NA|166aa|down_3|NZ_CP053416.1_851026_851524_-	PRK15331, PRK15331, type III secretion system translocator chaperone SicA	NA|357aa|down_4|NZ_CP053416.1_851661_852732_-	PRK08156, PRK08156, EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA|264aa|down_5|NZ_CP053416.1_852718_853510_-	PRK15332, PRK15332, SpaR/YscT/HrcT type III secretion system export apparatus protein	NA|87aa|down_6|NZ_CP053416.1_853513_853774_-	PRK15333, PRK15333, EscS/YscS/HrcS family type III secretion system export apparatus protein	NA|225aa|down_7|NZ_CP053416.1_853799_854474_-	PRK12796, spaP, EscR/YscR/HrcR family type III secretion system export apparatus protein	NA|304aa|down_8|NZ_CP053416.1_854463_855375_-	PRK08158, PRK08158, YscQ/HrcQ family type III secretion apparatus protein	NA|334aa|down_9|NZ_CP053416.1_855374_856376_-	PRK15334, PRK15334, type III secretion system protein SpaN
GCF_006113225.1_ASM611322v2	NZ_CP053416	Salmonella bongori strain 85-0051 chromosome, complete genome	2	892263-893939	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,DinG,cas14j,c2c9_V-U4	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	27,27,26	27	TypeI-E	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,DinG,cas14j,c2c9_V-U4	NA,NA	NA|254aa|up_9|NZ_CP053416.1_883993_884755_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP053416.1_884735_885785_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP053416.1_885781_886261_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP053416.1_886260_886971_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP053416.1_886989_887301_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP053416.1_887491_887815_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP053416.1_887865_888471_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP053416.1_888457_889897_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP053416.1_889906_890815_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|351aa|up_0|NZ_CP053416.1_891068_892121_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP053416.1_894035_894329_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP053416.1_894328_895249_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP053416.1_895245_895896_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|249aa|down_3|NZ_CP053416.1_895877_896624_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP053416.1_896634_897690_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|185aa|down_5|NZ_CP053416.1_897703_898258_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|520aa|down_6|NZ_CP053416.1_898254_899814_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_7|NZ_CP053416.1_899825_902489_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|NZ_CP053416.1_902925_903879_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|NZ_CP053416.1_903964_904699_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_006113225.1_ASM611322v2	NZ_CP053416	Salmonella bongori strain 85-0051 chromosome, complete genome	3	909931-910752	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,DinG,cas14j,c2c9_V-U4	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,28	2	4	910204-910235|910204-910235|910206-910238|910206-910238	NZ_CP053416.1_167346-167315|NZ_CP053416.1_188734-188703|NZ_CP053416.1_167346-167314|NZ_CP053416.1_188734-188702	I-E:I-E:I-E	13,13,13	13	TypeI-E	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,DinG,cas14j,c2c9_V-U4	NA,NA	cas7|352aa|up_9|NZ_CP053416.1_896634_897690_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|185aa|up_8|NZ_CP053416.1_897703_898258_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|520aa|up_7|NZ_CP053416.1_898254_899814_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|up_6|NZ_CP053416.1_899825_902489_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_5|NZ_CP053416.1_902925_903879_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_CP053416.1_903964_904699_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP053416.1_904782_906495_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP053416.1_906494_908294_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP053416.1_908598_908961_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP053416.1_909041_909839_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP053416.1_911048_911720_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP053416.1_911855_913154_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP053416.1_913236_914874_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_3|NZ_CP053416.1_915101_915893_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|745aa|down_4|NZ_CP053416.1_916010_918245_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|432aa|down_5|NZ_CP053416.1_918296_919592_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_6|NZ_CP053416.1_919649_922406_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|381aa|down_7|NZ_CP053416.1_922449_923592_-	pfam02595, Gly_kinase, Glycerate kinase family	NA|447aa|down_8|NZ_CP053416.1_923670_925011_-	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|447aa|down_9|NZ_CP053416.1_925031_926372_-	TIGR03247, glucar-dehydr, glucarate dehydratase
