The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP035288	Staphylococcus epidermidis strain ATCC 14990 chromosome, complete genome	2466502	95108	127052	2466502	transposase	Staphylococcus_phage(55.56%)	33	NA	NA
WP_134943505.1|95108_95783_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.7	1.3e-126
WP_164071529.1|95810_96263_-	signal peptidase II	NA	NA	NA	NA	NA
WP_057504659.1|96422_96824_+	winged helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	45.6	1.9e-21
WP_057504658.1|97077_97845_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_002485759.1|98101_100510_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	64.9	8.1e-256
WP_134943506.1|100490_102185_-|transposase	IS1182-like element ISSep1 family transposase	transposase	A0ZS58	Staphylococcus_virus	77.4	7.2e-243
WP_049374229.1|102605_104027_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_057504655.1|104254_104917_+	CadD family cadmium resistance transporter	NA	NA	NA	NA	NA
WP_001105987.1|105424_106099_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.6	6.8e-128
WP_000163428.1|106381_107728_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000425271.1|108027_108435_+	Hg(II)-responsive transcriptional regulator MerR	NA	NA	NA	NA	NA
WP_000746201.1|108451_108805_+	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_000010351.1|108801_109482_+	cytochrome c biosynthesis protein	NA	NA	NA	NA	NA
WP_000968575.1|109616_109955_+	hypothetical protein	NA	NA	NA	NA	NA
WP_057504652.1|110012_111656_+	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.4	1.7e-50
WP_000790334.1|111737_112388_+	organomercurial lyase MerB	NA	NA	NA	NA	NA
WP_000377077.1|112582_113098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000253065.1|113336_113543_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001802813.1|113567_113849_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002409346.1|113914_114589_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	3.4e-127
WP_001053439.1|114788_115418_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000931963.1|115432_115675_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000832687.1|116073_116925_+|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	95.7	1.4e-69
WP_000036756.1|117024_117954_-	carbamate kinase	NA	NA	NA	NA	NA
WP_000793596.1|117973_118972_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_000272781.1|119009_119699_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_000344142.1|119740_121162_-	arginine-ornithine antiporter	NA	NA	NA	NA	NA
WP_000249804.1|121247_122483_-	arginine deiminase	NA	NA	NA	NA	NA
WP_000711815.1|122751_123198_-	ArgR family transcriptional regulator	NA	NA	NA	NA	NA
WP_078147993.1|124140_124452_+	DUF3387 domain-containing protein	NA	NA	NA	NA	NA
WP_000475804.1|124722_125154_-	universal stress protein	NA	NA	NA	NA	NA
WP_000916431.1|126035_126362_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001106065.1|126377_127052_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	95.5	9.6e-122
>prophage 2
NZ_CP035288	Staphylococcus epidermidis strain ATCC 14990 chromosome, complete genome	2466502	1062311	1110537	2466502	transposase,integrase,tRNA	Staphylococcus_phage(81.82%)	39	1052441:1052457	1095212:1095228
1052441:1052457	attL	TAAAGCAACCCCTATAT	NA	NA	NA	NA
WP_002456422.1|1062311_1062806_-|integrase	site-specific integrase	integrase	B7T092	Staphylococcus_virus	76.1	3.8e-67
WP_002456423.1|1062964_1063177_+	hypothetical protein	NA	A0A2H4JCA1	uncultured_Caudovirales_phage	72.9	7.3e-20
WP_002456424.1|1063556_1064291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049387519.1|1064817_1065105_-	hypothetical protein	NA	A0A2H4JGN1	uncultured_Caudovirales_phage	50.0	1.6e-17
WP_002456427.1|1065266_1065932_-	hypothetical protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	41.8	7.0e-08
WP_002456429.1|1067182_1068607_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	63.9	6.6e-173
WP_001829851.1|1068596_1069598_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	50.2	6.9e-92
WP_002457867.1|1069594_1069843_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	83.1	6.5e-36
WP_002456430.1|1069913_1070381_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	57.4	5.5e-44
WP_002456431.1|1070367_1071153_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	71.3	2.0e-99
WP_002489635.1|1071383_1072976_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	83.4	2.1e-268
WP_001829830.1|1073345_1074545_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	85.4	4.1e-192
WP_002474706.1|1074647_1075556_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	80.6	1.8e-102
WP_001829832.1|1075736_1076573_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	73.3	1.0e-120
WP_162154154.1|1076875_1077013_+	hypothetical protein	NA	A0A146ICT8	Staphylococcus_phage	76.7	4.0e-11
WP_109548233.1|1077242_1078421_-|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	37.0	2.2e-60
WP_001830729.1|1078899_1079253_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	32.5	8.5e-05
WP_001830726.1|1079249_1079615_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	57.0	4.1e-34
WP_002446728.1|1079653_1079962_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001830731.1|1080238_1080952_+	transaldolase	NA	M1PR54	Cyanophage	37.4	4.1e-22
WP_002485267.1|1081091_1081535_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	43.5	5.3e-20
WP_001830734.1|1081521_1081965_-	competence protein ComK	NA	NA	NA	NA	NA
WP_001830724.1|1081970_1082450_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	42.3	2.7e-25
WP_002456441.1|1082657_1082873_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001830727.1|1083250_1084102_+	autolysin	NA	A0A1J0MFB0	Staphylococcus_phage	35.6	1.0e-32
WP_002484471.1|1084449_1085934_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	65.6	2.5e-13
WP_002495598.1|1086370_1087414_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	66.8	8.9e-135
WP_002467848.1|1087420_1088053_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	77.6	1.1e-87
WP_002456445.1|1088065_1089247_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	76.1	2.5e-178
WP_002456446.1|1089259_1089721_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	84.2	1.2e-59
WP_001832688.1|1089977_1090979_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	69.4	1.3e-130
WP_001830886.1|1091221_1092049_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001830809.1|1092538_1092940_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001830894.1|1093176_1093740_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	66.5	1.9e-67
WP_001830802.1|1093736_1094690_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	84.7	3.3e-67
WP_001830884.1|1094796_1096011_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	83.7	4.6e-183
1095212:1095228	attR	ATATAGGGGTTGCTTTA	NA	NA	NA	NA
WP_002493961.1|1096302_1098717_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	87.4	0.0e+00
WP_001830891.1|1098742_1099054_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	71.8	4.1e-35
WP_001832672.1|1099458_1110537_+	YSIRK signal domain/LPXTG anchor domain surface protein	NA	A0A2H4PQU6	Staphylococcus_phage	25.7	7.8e-27
>prophage 3
NZ_CP035288	Staphylococcus epidermidis strain ATCC 14990 chromosome, complete genome	2466502	1819563	1828033	2466502		Synechococcus_phage(33.33%)	9	NA	NA
WP_001831672.1|1819563_1820130_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.0	6.1e-29
WP_001831685.1|1820129_1821161_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.4	2.1e-64
WP_002485328.1|1821153_1822638_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.9	7.2e-45
WP_002467589.1|1822616_1824806_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.4	1.1e-139
WP_001831727.1|1824798_1825470_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_001831728.1|1825471_1825732_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_001831723.1|1825731_1826436_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	H8ZMN3	Synechococcus_phage	42.5	1.6e-47
WP_002486052.1|1826436_1827564_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_002486053.1|1827550_1828033_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.7	2.6e-20
>prophage 4
NZ_CP035288	Staphylococcus epidermidis strain ATCC 14990 chromosome, complete genome	2466502	1880995	1885572	2466502	transposase	Synechococcus_phage(33.33%)	9	NA	NA
WP_001829332.1|1880995_1883254_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	32.0	6.3e-117
WP_002469315.1|1883372_1883750_-	glucose-6-phosphate 1-dehydrogenase	NA	NA	NA	NA	NA
WP_080012080.1|1883758_1884070_-	glucose-6-phosphate dehydrogenase	NA	E3SJC5	Synechococcus_phage	37.6	1.6e-07
WP_077431490.1|1884079_1884229_-	hypothetical protein	NA	M4SJ15	Cyanophage	51.0	3.5e-08
WP_001829271.1|1884235_1884430_-	hypothetical protein	NA	E3SKF6	Synechococcus_phage	48.4	9.1e-09
WP_080003812.1|1884426_1884741_-	glucose-6-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_001829258.1|1884832_1885036_+|transposase	transposase	transposase	A0A0N7GFG6	Staphylococcus_phage	80.0	3.3e-09
WP_107362610.1|1885102_1885198_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_001829295.1|1885308_1885572_-	DUF4176 domain-containing protein	NA	A0A1X9I6T6	Streptococcus_phage	41.4	1.5e-09
>prophage 5
NZ_CP035288	Staphylococcus epidermidis strain ATCC 14990 chromosome, complete genome	2466502	2061411	2071845	2466502		uncultured_Caudovirales_phage(66.67%)	10	NA	NA
WP_001829596.1|2061411_2062191_-	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	33.6	5.1e-18
WP_002438903.1|2062187_2063147_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	100.0	4.1e-17
WP_001829651.1|2063130_2064105_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	99.4	1.0e-164
WP_002456931.1|2064120_2064384_-	hypothetical protein	NA	A0A2H4IYB4	uncultured_Caudovirales_phage	100.0	5.5e-17
WP_001829597.1|2064358_2065327_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	100.0	3.9e-185
WP_001829582.1|2065445_2067551_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	100.0	0.0e+00
WP_001829589.1|2067513_2067912_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	100.0	2.0e-71
WP_002468673.1|2068672_2069542_+	DMT family transporter	NA	NA	NA	NA	NA
WP_001832596.1|2069555_2070056_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.1	1.1e-50
WP_001832607.1|2070339_2071845_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.0	5.5e-61
>prophage 6
NZ_CP035288	Staphylococcus epidermidis strain ATCC 14990 chromosome, complete genome	2466502	2091708	2098970	2466502		Pandoravirus(16.67%)	10	NA	NA
WP_001830323.1|2091708_2092860_-	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	39.6	7.5e-26
WP_001830349.1|2092849_2093437_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_057504650.1|2093733_2094405_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	55.2	1.2e-63
WP_001830341.1|2094409_2094829_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_001830330.1|2094829_2095543_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	44.8	1.6e-55
WP_001830331.1|2095644_2096244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162152262.1|2096611_2096749_+	hypothetical protein	NA	A0A146ICT8	Staphylococcus_phage	79.1	1.1e-11
WP_001830329.1|2097344_2097782_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001830332.1|2097832_2098306_+	DoxX family protein	NA	NA	NA	NA	NA
WP_001830352.1|2098280_2098970_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	3.4e-34
