The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP035294	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305 chromosome, complete genome	2499507	1004757	1019063	2499507		Staphylococcus_phage(92.31%)	16	NA	NA
WP_041784790.1|1004757_1006140_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	61.3	5.3e-167
WP_011302825.1|1006159_1007164_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	49.4	2.9e-90
WP_011302826.1|1007153_1007405_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	81.1	4.2e-30
WP_011302827.1|1007464_1007941_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	53.5	4.8e-43
WP_041784896.1|1007948_1008716_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	71.8	4.8e-101
WP_011302829.1|1008811_1010401_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	81.8	8.5e-262
WP_011302830.1|1010789_1011986_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	86.6	1.8e-195
WP_011302831.1|1012084_1012993_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	75.8	1.1e-101
WP_011302832.1|1013162_1013999_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	68.2	4.2e-111
WP_011302833.1|1014269_1014626_-	CrcB family protein	NA	NA	NA	NA	NA
WP_011302834.1|1014622_1014988_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	62.8	3.3e-36
WP_011302835.1|1015198_1015504_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011302836.1|1015788_1016502_+	transaldolase	NA	E3SKN5	Synechococcus_phage	36.3	2.9e-20
WP_011302838.1|1017618_1018068_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	47.5	1.3e-21
WP_011302839.1|1018075_1018501_-	competence protein ComK	NA	NA	NA	NA	NA
WP_103314713.1|1018514_1019063_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	43.7	2.6e-24
>prophage 2
NZ_CP035294	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305 chromosome, complete genome	2499507	1023431	1033568	2499507		Staphylococcus_phage(100.0%)	10	NA	NA
WP_011302847.1|1023431_1024898_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	58.6	5.5e-13
WP_011302848.1|1025439_1026483_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	64.4	1.0e-130
WP_011302849.1|1026489_1027122_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	64.8	5.0e-72
WP_011302850.1|1027133_1028315_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	71.2	4.2e-165
WP_002482978.1|1028328_1028787_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	76.3	6.6e-58
WP_011302851.1|1029051_1030053_-	proline dehydrogenase family protein	NA	A0A2H4PQT6	Staphylococcus_phage	68.5	7.3e-126
WP_011302852.1|1030319_1031144_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_011302853.1|1031379_1032336_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_002482982.1|1032487_1032889_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011302854.1|1033007_1033568_-	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	63.8	9.5e-67
>prophage 3
NZ_CP035294	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305 chromosome, complete genome	2499507	1162212	1171338	2499507	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_002483095.1|1162212_1163217_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.9	1.7e-05
WP_011302949.1|1163219_1164245_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_011302950.1|1164265_1165411_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.0	2.5e-85
WP_011302951.1|1165426_1165687_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	44.1	7.4e-06
WP_011302952.1|1166069_1168346_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	34.6	1.7e-29
WP_011302953.1|1168527_1170807_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.4	3.8e-69
WP_002483102.1|1170819_1171338_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.2	6.6e-30
>prophage 4
NZ_CP035294	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305 chromosome, complete genome	2499507	1297642	1307610	2499507		uncultured_Mediterranean_phage(28.57%)	11	NA	NA
WP_002483230.1|1297642_1298530_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.4	5.1e-38
WP_011303058.1|1298598_1299105_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_011303059.1|1299196_1299931_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	23.5	1.4e-09
WP_002483233.1|1299914_1300463_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	31.4	2.1e-10
WP_002483234.1|1300455_1301193_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_011303060.1|1301319_1302045_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	42.6	1.1e-46
WP_041784899.1|1302028_1303792_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	23.8	1.7e-21
WP_037538408.1|1304219_1304765_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_002483238.1|1304920_1305169_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	4.9e-15
WP_011303062.1|1305278_1306238_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011303063.1|1306230_1307610_+	ATP-dependent DNA helicase RecQ	NA	M1PGQ0	Moumouvirus	32.4	7.1e-55
>prophage 5
NZ_CP035294	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305 chromosome, complete genome	2499507	1785982	1794457	2499507		Synechococcus_phage(16.67%)	9	NA	NA
WP_011303433.1|1785982_1786549_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	38.2	9.7e-27
WP_011303434.1|1786551_1787580_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.5	4.6e-67
WP_011303435.1|1787572_1789060_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.6e-44
WP_011303436.1|1789038_1791228_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.6	1.4e-137
WP_011303437.1|1791220_1791892_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_011303438.1|1791891_1792152_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_011303439.1|1792154_1792856_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D7SE76	Cyanophage	42.5	6.8e-46
WP_011303440.1|1792860_1793988_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_011303441.1|1793974_1794457_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.0	2.6e-20
>prophage 6
NZ_CP035294	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305 chromosome, complete genome	2499507	2029683	2048413	2499507		uncultured_Caudovirales_phage(33.33%)	14	NA	NA
WP_011303647.1|2029683_2030652_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.3	2.6e-136
WP_002483928.1|2031065_2032034_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	94.4	2.2e-175
WP_011303648.1|2032157_2034263_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	89.9	0.0e+00
WP_002483930.1|2034225_2034624_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	76.5	8.6e-54
WP_011303649.1|2035350_2036238_+	DMT family transporter	NA	NA	NA	NA	NA
WP_002483932.1|2036251_2036752_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	72.3	2.0e-52
WP_011303650.1|2036934_2038449_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	35.8	9.5e-69
WP_011303651.1|2038819_2040325_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	6.3e-65
WP_011303653.1|2040794_2041742_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	23.6	1.5e-11
WP_002483937.1|2041912_2042461_-	5'-3'-deoxyribonucleotidase	NA	A0A0A0PKY7	Bacillus_phage	39.0	2.0e-29
WP_011303654.1|2042638_2043694_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	27.2	2.3e-21
WP_002483939.1|2043852_2045370_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_011303655.1|2045366_2046329_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.5	4.8e-26
WP_011303656.1|2046634_2048413_-	DNA helicase RecQ	NA	M1PGQ0	Moumouvirus	36.8	5.9e-78
>prophage 7
NZ_CP035294	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305 chromosome, complete genome	2499507	2056716	2064266	2499507		Pandoravirus(16.67%)	9	NA	NA
WP_011303663.1|2056716_2057859_-	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	36.7	5.4e-24
WP_011303664.1|2057842_2058436_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	41.5	1.9e-36
WP_002483950.1|2058691_2059363_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	54.9	1.2e-63
WP_011303665.1|2059364_2059790_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_002483952.1|2059782_2060499_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.4	2.5e-51
WP_011303666.1|2060739_2061333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002483954.1|2061401_2061653_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_011303667.1|2061870_2062932_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	42.3	8.7e-61
WP_002483956.1|2063426_2064266_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	40.2	1.2e-52
>prophage 1
NZ_CP035296	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305 plasmid unnamed2, complete sequence	38454	0	4536	38454		Enterococcus_phage(50.0%)	5	NA	NA
WP_002448023.1|1956_2751_+	ParA family protein	NA	F0PIG8	Enterococcus_phage	34.1	4.3e-28
WP_002448025.1|2756_2957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002509686.1|3092_3227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011304046.1|3240_4125_-	permease	NA	NA	NA	NA	NA
WP_011304045.1|4215_4536_-	winged helix-turn-helix transcriptional regulator	NA	A0A218MNF3	uncultured_virus	41.8	1.2e-05
>prophage 2
NZ_CP035296	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305 plasmid unnamed2, complete sequence	38454	8780	12895	38454		Staphylococcus_phage(75.0%)	6	NA	NA
WP_002509693.1|8780_9095_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	60.6	3.6e-31
WP_077460980.1|9094_10387_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	80.2	2.1e-186
WP_002509695.1|10404_10800_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	82.0	2.6e-58
WP_002508712.1|11526_11826_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002508713.1|11904_12117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011304040.1|12343_12895_+	recombinase family protein	NA	I1ZBD6	Salisaeta_icosahedral_phage	41.0	2.9e-31
>prophage 3
NZ_CP035296	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305 plasmid unnamed2, complete sequence	38454	17496	19614	38454		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011304033.1|17496_19614_-	amidase domain-containing protein	NA	A0A0U1X189	Staphylococcus_phage	46.0	1.9e-11
>prophage 4
NZ_CP035296	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305 plasmid unnamed2, complete sequence	38454	24130	24805	38454	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
WP_048787266.1|24130_24805_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	3.4e-127
>prophage 5
NZ_CP035296	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305 plasmid unnamed2, complete sequence	38454	28564	29239	38454	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
WP_048787266.1|28564_29239_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	3.4e-127
>prophage 6
NZ_CP035296	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305 plasmid unnamed2, complete sequence	38454	33852	36577	38454	transposase	Pandoravirus(50.0%)	4	NA	NA
WP_011304053.1|33852_34854_+	ThiF family adenylyltransferase	NA	S4VW33	Pandoravirus	26.6	2.6e-06
WP_011304051.1|35161_35410_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_011304050.1|35410_35680_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_138936976.1|35902_36577_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.7	3.8e-126
>prophage 1
NZ_CP035297	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305 plasmid unnamed3, complete sequence	22856	0	4135	22856		Bacillus_phage(100.0%)	4	NA	NA
WP_011304071.1|417_1008_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_011304070.1|1183_1972_-	HAD family phosphatase	NA	NA	NA	NA	NA
WP_103314598.1|2850_3183_-	protein rep	NA	NA	NA	NA	NA
WP_002440813.1|3163_4135_-	replication initiator protein A	NA	A0A0S2MVK1	Bacillus_phage	34.7	2.5e-06
>prophage 2
NZ_CP035297	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305 plasmid unnamed3, complete sequence	22856	12902	22635	22856	transposase	Staphylococcus_phage(60.0%)	8	NA	NA
WP_011304078.1|12902_13271_+	Cd(II)/Pb(II)/Zn(II)-sensing metalloregulatory transcriptional repressor CadC	NA	E4ZFI8	Streptococcus_phage	87.7	4.5e-57
WP_041785032.1|13263_15681_+	cadmium-translocating P-type ATPase CadA	NA	E4ZFI9	Streptococcus_phage	63.0	1.3e-248
WP_011304076.1|15785_16400_+	CadD family cadmium resistance transporter	NA	NA	NA	NA	NA
WP_011304059.1|17166_17841_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.7	1.7e-126
WP_041785029.1|17856_18342_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002324169.1|18526_18670_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138936977.1|20004_20679_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
WP_011304072.1|21960_22635_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	97.3	3.2e-125
