The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP040750	Plantibacter sp. M259 chromosome, complete genome	4311036	1177820	1225570	4311036	tRNA,terminase,tail,capsid,portal,protease,integrase	Gordonia_phage(18.75%)	58	1192800:1192815	1201034:1201049
WP_085514014.1|1177820_1179161_+|tRNA	aspartate--tRNA(Asn) ligase	tRNA	A0A2K9L0E9	Tupanvirus	34.8	5.8e-70
WP_138945216.1|1179179_1179632_+	nitric oxide synthase	NA	NA	NA	NA	NA
WP_138945217.1|1179721_1180498_+	putative protein N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_079706641.1|1180516_1180825_-	Dabb family protein	NA	NA	NA	NA	NA
WP_138945218.1|1180865_1181126_-	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_064294610.1|1181318_1181618_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_137243973.1|1181660_1181969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003792170.1|1182215_1182314_-	AURKAIP1/COX24 domain-containing protein	NA	NA	NA	NA	NA
WP_079706638.1|1182453_1182648_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_064294613.1|1182774_1183179_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_079003294.1|1183251_1184694_+	potassium transporter Trk	NA	NA	NA	NA	NA
WP_056013885.1|1184686_1185358_+	TrkA family potassium uptake protein	NA	NA	NA	NA	NA
WP_138945219.1|1185365_1185824_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_138945220.1|1185887_1186487_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_138945221.1|1186483_1186987_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_138945222.1|1187003_1187846_-	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	32.8	1.6e-25
WP_168223320.1|1187894_1189016_-|protease	MarP family serine protease	protease	NA	NA	NA	NA
WP_137244306.1|1189193_1189640_-	nucleoside deaminase	NA	S4VYZ2	Pandoravirus	39.8	4.8e-05
WP_079003301.1|1190855_1191563_+	winged helix-turn-helix transcriptional regulator	NA	W8CYM9	Bacillus_phage	44.3	2.2e-07
WP_138945224.1|1191643_1192651_-	DMT family transporter	NA	NA	NA	NA	NA
1192800:1192815	attL	CGAGGATGCCGCCGAG	NA	NA	NA	NA
WP_138945225.1|1194024_1194669_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_138945226.1|1194665_1195283_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_138945227.1|1195275_1195644_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_138945228.1|1195704_1199391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138945229.1|1199782_1200586_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0K0N6I5	Gordonia_phage	32.0	4.2e-23
WP_138945230.1|1200664_1201060_+	hypothetical protein	NA	NA	NA	NA	NA
1201034:1201049	attR	CTCGGCGGCATCCTCG	NA	NA	NA	NA
WP_138945231.1|1201059_1201350_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138945232.1|1201384_1202596_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138945233.1|1202592_1204518_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138945234.1|1204553_1204844_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138945235.1|1204946_1205318_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138945236.1|1205314_1205767_-	hypothetical protein	NA	A0A2R4A2L0	Microbacterium_phage	27.2	2.1e-11
WP_138945237.1|1205795_1206680_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2P1CFS5	Microbacterium_phage	35.9	3.5e-15
WP_138945238.1|1206682_1207225_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138945239.1|1207286_1208186_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138945240.1|1208182_1209286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138945241.1|1209285_1210188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138945242.1|1210348_1212871_-|tail	phage tail tape measure protein	tail	I3NL90	Bifidobacterium_phage	41.8	7.6e-71
WP_138945243.1|1213169_1213331_+	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_138945244.1|1213495_1213717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138945245.1|1213713_1213938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138945246.1|1213971_1214328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138945247.1|1214396_1214996_-	hypothetical protein	NA	NA	NA	NA	NA
WP_168223321.1|1215078_1215468_-	hypothetical protein	NA	NA	NA	NA	NA
WP_168223322.1|1215559_1215721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138945249.1|1215777_1216167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138945250.1|1216183_1216588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138945251.1|1216596_1217004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138945252.1|1217000_1217474_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138945253.1|1217639_1218536_-|capsid	phage major capsid protein	capsid	A0A2H4IYA3	uncultured_Caudovirales_phage	69.2	4.4e-114
WP_138945254.1|1218551_1219022_-	hypothetical protein	NA	A0A2H4PEW6	Gordonia_phage	39.9	1.7e-16
WP_138945255.1|1219104_1219764_-	hypothetical protein	NA	G1BSM8	Mycobacterium_virus	37.8	3.2e-21
WP_138945254.1|1220097_1220568_-	hypothetical protein	NA	A0A2H4PEW6	Gordonia_phage	39.9	1.7e-16
WP_138945255.1|1220650_1221310_-	hypothetical protein	NA	G1BSM8	Mycobacterium_virus	37.8	3.2e-21
WP_138945256.1|1221296_1222700_-|portal	phage portal protein	portal	A0A2H4J2P6	uncultured_Caudovirales_phage	58.4	7.0e-143
WP_168223323.1|1222696_1224133_-|terminase	terminase	terminase	G9FH27	Rhodococcus_phage	45.1	4.1e-98
WP_138945257.1|1224161_1224458_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138945258.1|1225276_1225570_-	HNH endonuclease	NA	A0A222ZN30	Mycobacterium_phage	50.0	2.8e-17
>prophage 2
NZ_CP040750	Plantibacter sp. M259 chromosome, complete genome	4311036	1230370	1236493	4311036		Mycobacterium_phage(57.14%)	11	NA	NA
WP_138945268.1|1230370_1230787_-	single-stranded DNA-binding protein	NA	A0A1L6BYK5	Mycobacterium_phage	34.0	2.3e-09
WP_138945269.1|1230783_1231005_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138945271.1|1231204_1231642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138945272.1|1233062_1233488_-	hypothetical protein	NA	S5W0K5	Mycobacterium_phage	33.6	3.2e-06
WP_138945273.1|1233484_1233703_-	WhiB family transcriptional regulator	NA	A0A2H4PFS1	Mycobacterium_phage	42.2	2.1e-09
WP_138945274.1|1233699_1233930_-	hypothetical protein	NA	NA	NA	NA	NA
WP_168223326.1|1233926_1234103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138945275.1|1234387_1234750_-	hypothetical protein	NA	A0A249XSN8	Mycobacterium_phage	49.6	1.9e-20
WP_138945276.1|1234746_1235301_-	hypothetical protein	NA	A0A142KB10	Gordonia_phage	65.6	5.0e-44
WP_138945277.1|1235300_1235609_-	hypothetical protein	NA	A0A1B3B021	Gordonia_phage	53.8	1.3e-22
WP_168223327.1|1235605_1236493_-	hypothetical protein	NA	A0A1P8VV67	Rathayibacter_phage	44.8	3.0e-46
>prophage 3
NZ_CP040750	Plantibacter sp. M259 chromosome, complete genome	4311036	2910598	2917769	4311036		Mycobacterium_phage(16.67%)	6	NA	NA
WP_168223452.1|2910598_2911792_+	M23 family metallopeptidase	NA	G8I8L5	Mycobacterium_phage	45.9	3.6e-15
WP_064294335.1|2911879_2912371_-	inorganic diphosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	46.1	5.5e-34
WP_138946446.1|2913568_2914120_+	hypoxanthine phosphoribosyltransferase	NA	A0A1V0SEQ1	Hokovirus	29.7	1.8e-09
WP_079705154.1|2914274_2916293_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	G8DDJ2	Micromonas_pusilla_virus	44.2	5.3e-107
WP_138946447.1|2916298_2916961_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	44.9	4.3e-34
WP_138946448.1|2916965_2917769_+	dihydropteroate synthase	NA	S4VNV0	Pandoravirus	32.1	6.2e-19
>prophage 4
NZ_CP040750	Plantibacter sp. M259 chromosome, complete genome	4311036	3746166	3756867	4311036	protease,tRNA	Gordonia_phage(33.33%)	8	NA	NA
WP_064295154.1|3746166_3747444_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	58.0	3.3e-131
WP_138946877.1|3747516_3749550_-	M3 family metallopeptidase	NA	A0A1V0SID3	Klosneuvirus	23.0	8.6e-33
WP_138946878.1|3749583_3749838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064295157.1|3749837_3750284_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_138946879.1|3750280_3752878_-|tRNA	valine--tRNA ligase	tRNA	A0A2K9KZB8	Tupanvirus	37.5	7.9e-156
WP_138946880.1|3753010_3753829_+	acyltransferase family protein	NA	A0A166XZF2	Gordonia_phage	45.1	8.8e-45
WP_168223431.1|3753825_3755214_+	acyltransferase	NA	A0A166XZF2	Gordonia_phage	29.7	3.2e-23
WP_138946882.1|3755193_3756867_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	4.3e-14
