assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006051015.1_ASM605101v2	NZ_CP053417	Salmonella bongori strain 92-0238 chromosome, complete genome	1	2697430-2698492	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1	DinG,DEDDh,RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	16,17,17	17	TypeI-E	DinG,DEDDh,RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3	NA,NA	NA|447aa|up_9|NZ_CP053417.1_2681444_2682785_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|447aa|up_8|NZ_CP053417.1_2682805_2684146_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|381aa|up_7|NZ_CP053417.1_2684224_2685367_+	pfam02595, Gly_kinase, Glycerate kinase family	NA|919aa|up_6|NZ_CP053417.1_2685410_2688167_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_5|NZ_CP053417.1_2688224_2689520_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_4|NZ_CP053417.1_2689571_2691806_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|264aa|up_3|NZ_CP053417.1_2691923_2692715_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP053417.1_2692942_2694580_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP053417.1_2694662_2695961_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP053417.1_2696467_2697139_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP053417.1_2698583_2699381_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP053417.1_2699461_2699824_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP053417.1_2700130_2701930_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP053417.1_2701929_2703642_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP053417.1_2703725_2704460_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP053417.1_2704550_2705504_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_6|NZ_CP053417.1_2705938_2708602_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|down_7|NZ_CP053417.1_2708613_2710170_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|185aa|down_8|NZ_CP053417.1_2710166_2710721_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|down_9|NZ_CP053417.1_2710734_2711790_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI
GCF_006051015.1_ASM605101v2	NZ_CP053417	Salmonella bongori strain 92-0238 chromosome, complete genome	2	2714373-2714829	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1	DinG,DEDDh,RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	6,7,7	7	TypeI-E	DinG,DEDDh,RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3	NA,NA	NA|571aa|up_9|NZ_CP053417.1_2701929_2703642_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP053417.1_2703725_2704460_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_7|NZ_CP053417.1_2704550_2705504_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_6|NZ_CP053417.1_2705938_2708602_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_5|NZ_CP053417.1_2708613_2710170_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|185aa|up_4|NZ_CP053417.1_2710166_2710721_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_3|NZ_CP053417.1_2710734_2711790_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_2|NZ_CP053417.1_2711800_2712547_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_1|NZ_CP053417.1_2712528_2713179_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|315aa|up_0|NZ_CP053417.1_2713175_2714120_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	NA|351aa|down_0|NZ_CP053417.1_2714970_2716023_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP053417.1_2716275_2717184_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP053417.1_2717193_2718633_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP053417.1_2718619_2719225_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP053417.1_2719275_2719599_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP053417.1_2719788_2720100_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP053417.1_2720118_2720829_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP053417.1_2720828_2721308_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP053417.1_2721304_2722354_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP053417.1_2722334_2723096_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_006051015.1_ASM605101v2	NZ_CP053417	Salmonella bongori strain 92-0238 chromosome, complete genome	3	3009315-3009405	3	CRISPRCasFinder	no		DinG,DEDDh,RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3	Orphan	GCGCGTGATGAAATGGGGAGATG	23	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3	NA,NA|46aa|down_6|NZ_CP053417.1_3016127_3016265_+	NA|327aa|up_9|NZ_CP053417.1_2991161_2992142_+	PRK10856, PRK10856, cytoskeleton protein RodZ	NA|373aa|up_8|NZ_CP053417.1_2992168_2993287_+	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA|425aa|up_7|NZ_CP053417.1_2993397_2994672_+	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|207aa|up_6|NZ_CP053417.1_2994685_2995306_+	COG2976, COG2976, Uncharacterized protein conserved in bacteria [Function unknown]	NA|393aa|up_5|NZ_CP053417.1_2995316_2996495_+	PRK11138, PRK11138, outer membrane biogenesis protein BamB; Provisional	NA|491aa|up_4|NZ_CP053417.1_2996611_2998084_+	PRK00093, PRK00093, GTP-binding protein Der; Reviewed	NA|74aa|up_3|NZ_CP053417.1_2998204_2998426_+	pfam07191, zinc-ribbons_6, zinc-ribbons	NA|732aa|up_2|NZ_CP053417.1_2998755_3000951_+	NF033423, inverse_SinH, intimin-like inverse autotransporter SinH	NA|321aa|up_1|NZ_CP053417.1_3000989_3001952_+	NF033423, inverse_SinH, intimin-like inverse autotransporter SinH	NA|2136aa|up_0|NZ_CP053417.1_3002067_3008475_+	PRK15315, PRK15315, outer membrane protein RatA; Provisional	NA|449aa|down_0|NZ_CP053417.1_3009490_3010837_-	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed	NA|489aa|down_1|NZ_CP053417.1_3010997_3012464_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|526aa|down_2|NZ_CP053417.1_3012533_3014111_+	PRK00074, guaA, GMP synthase; Reviewed	NA|180aa|down_3|NZ_CP053417.1_3014436_3014976_-	pfam17358, DUF5384, Family of unknown function (DUF5384)	NA|172aa|down_4|NZ_CP053417.1_3014991_3015507_-	COG3133, SlyB, Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]	NA|64aa|down_5|NZ_CP053417.1_3015756_3015948_-	pfam11119, DUF2633, Protein of unknown function (DUF2633)	NA|46aa|down_6|NZ_CP053417.1_3016127_3016265_+	NA	NA|738aa|down_7|NZ_CP053417.1_3016361_3018575_+	smart00052, EAL, Putative diguanylate phosphodiesterase	NA|514aa|down_8|NZ_CP053417.1_3018609_3020151_-	PRK10854, PRK10854, exopolyphosphatase; Provisional	NA|689aa|down_9|NZ_CP053417.1_3020155_3022222_-	COG0855, Ppk, Polyphosphate kinase [Inorganic ion transport and metabolism]
GCF_006051015.1_ASM605101v2	NZ_CP053417	Salmonella bongori strain 92-0238 chromosome, complete genome	4	3103199-3103398	4	CRISPRCasFinder	no		DinG,DEDDh,RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3	Orphan	TAACGTCTTATCCGGCCTACGCGGCGGTGTCGTCTGTGCCGGATGGCGA	49	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3	NA|80aa|up_9|NZ_CP053417.1_3092295_3092535_+,NA	NA|80aa|up_9|NZ_CP053417.1_3092295_3092535_+	NA	NA|170aa|up_8|NZ_CP053417.1_3092697_3093207_-	PRK09439, PRK09439, PTS system glucose-specific transporter subunit; Provisional	NA|576aa|up_7|NZ_CP053417.1_3093247_3094975_-	PRK11177, PRK11177, phosphoenolpyruvate-protein phosphotransferase PtsI	NA|86aa|up_6|NZ_CP053417.1_3095024_3095282_-	PRK10850, PRK10850, phosphocarrier protein Hpr	NA|324aa|up_5|NZ_CP053417.1_3095665_3096637_-	TIGR01139, Cysteine_synthase, cysteine synthase A	NA|254aa|up_4|NZ_CP053417.1_3096800_3097562_-	PRK04949, PRK04949, putative sulfate transport protein CysZ; Validated	NA|329aa|up_3|NZ_CP053417.1_3097793_3098780_+	PRK03427, PRK03427, cell division protein ZipA; Provisional	NA|672aa|up_2|NZ_CP053417.1_3098851_3100867_+	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|333aa|up_1|NZ_CP053417.1_3101083_3102082_-	pfam13593, SBF_like, SBF-like CPA transporter family (DUF4137)	NA|309aa|up_0|NZ_CP053417.1_3102171_3103098_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|472aa|down_0|NZ_CP053417.1_3104245_3105661_+	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|131aa|down_1|NZ_CP053417.1_3105713_3106106_-	pfam07037, DUF1323, Putative transcription regulator (DUF1323)	NA|121aa|down_2|NZ_CP053417.1_3106107_3106470_-	pfam07037, DUF1323, Putative transcription regulator (DUF1323)	NA|730aa|down_3|NZ_CP053417.1_3107073_3109263_+	cd01948, EAL, EAL domain	NA|401aa|down_4|NZ_CP053417.1_3109343_3110546_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|414aa|down_5|NZ_CP053417.1_3110887_3112129_+	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|109aa|down_6|NZ_CP053417.1_3112177_3112504_-	pfam10697, DUF2502, Protein of unknown function (DUF2502)	NA|333aa|down_7|NZ_CP053417.1_3112617_3113616_-	cd19151, AKR_AKR14A2, Salmonella enterica aldo-keto reductase (AKR) and similar protein	NA|551aa|down_8|NZ_CP053417.1_3113794_3115447_+	TIGR03393, Indole-3-pyruvate_decarboxylase, indolepyruvate decarboxylase, Erwinia family	NA|412aa|down_9|NZ_CP053417.1_3115467_3116703_-	PRK03655, PRK03655, putative ion channel protein; Provisional
