assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006016075.1_ASM601607v1	NZ_CP040093	Caloramator sp. E03 chromosome, complete genome	1	1435179-1435283	1	CRISPRCasFinder	no		cas3,DEDDh,csa3,cas14j,csx20,csm6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,cas8b1,cas7,cas5,cas4,cas1,cas2,Cas14u_CAS-V,casR	Orphan	CCTCAGGAAGTACCTTTAAAATAGATTTTACCTTGG	36	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,cas14j,csx20,csm6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,cas8b1,cas7,cas5,cas4,cas1,cas2,Cas14u_CAS-V,casR	NA|72aa|up_8|NZ_CP040093.1_1428024_1428240_-,NA|136aa|up_0|NZ_CP040093.1_1433643_1434051_-,NA|59aa|down_0|NZ_CP040093.1_1435772_1435949_+,NA|88aa|down_2|NZ_CP040093.1_1437753_1438017_-,NA|87aa|down_4|NZ_CP040093.1_1439356_1439617_-,NA|78aa|down_6|NZ_CP040093.1_1440812_1441046_-,NA|57aa|down_7|NZ_CP040093.1_1441098_1441269_-,NA|90aa|down_9|NZ_CP040093.1_1441708_1441978_-	NA|424aa|up_9|NZ_CP040093.1_1426637_1427909_-	pfam08378, NERD, Nuclease-related domain	NA|72aa|up_8|NZ_CP040093.1_1428024_1428240_-	NA	NA|199aa|up_7|NZ_CP040093.1_1428290_1428887_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|113aa|up_6|NZ_CP040093.1_1428899_1429238_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|538aa|up_5|NZ_CP040093.1_1429305_1430919_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|200aa|up_4|NZ_CP040093.1_1431594_1432194_-	COG3546, COG3546, Mn-containing catalase [Inorganic ion transport and metabolism]	NA|84aa|up_3|NZ_CP040093.1_1432205_1432457_-	pfam12652, CotJB, CotJB protein	NA|60aa|up_2|NZ_CP040093.1_1432492_1432672_-	pfam11007, CotJA, Spore coat associated protein JA (CotJA)	NA|150aa|up_1|NZ_CP040093.1_1433101_1433551_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|136aa|up_0|NZ_CP040093.1_1433643_1434051_-	NA	NA|59aa|down_0|NZ_CP040093.1_1435772_1435949_+	NA	NA|283aa|down_1|NZ_CP040093.1_1436558_1437407_-	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK	NA|88aa|down_2|NZ_CP040093.1_1437753_1438017_-	NA	NA|425aa|down_3|NZ_CP040093.1_1438065_1439340_-	TIGR00665, DnaB, replicative DNA helicase	NA|87aa|down_4|NZ_CP040093.1_1439356_1439617_-	NA	NA|293aa|down_5|NZ_CP040093.1_1439603_1440482_-	pfam13730, HTH_36, Helix-turn-helix domain	NA|78aa|down_6|NZ_CP040093.1_1440812_1441046_-	NA	NA|57aa|down_7|NZ_CP040093.1_1441098_1441269_-	NA	NA|74aa|down_8|NZ_CP040093.1_1441323_1441545_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|90aa|down_9|NZ_CP040093.1_1441708_1441978_-	NA
GCF_006016075.1_ASM601607v1	NZ_CP040093	Caloramator sp. E03 chromosome, complete genome	2	1443579-1443674	2	CRISPRCasFinder	no		cas3,DEDDh,csa3,cas14j,csx20,csm6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,cas8b1,cas7,cas5,cas4,cas1,cas2,Cas14u_CAS-V,casR	Orphan	GTATAGAATTAAAAATTTTTTATTATG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,cas14j,csx20,csm6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,cas8b1,cas7,cas5,cas4,cas1,cas2,Cas14u_CAS-V,casR	NA|87aa|up_8|NZ_CP040093.1_1439356_1439617_-,NA|78aa|up_6|NZ_CP040093.1_1440812_1441046_-,NA|57aa|up_5|NZ_CP040093.1_1441098_1441269_-,NA|90aa|up_3|NZ_CP040093.1_1441708_1441978_-,NA|58aa|up_2|NZ_CP040093.1_1442000_1442174_-,NA|83aa|down_2|NZ_CP040093.1_1446102_1446351_+,NA|46aa|down_3|NZ_CP040093.1_1447104_1447242_-	NA|425aa|up_9|NZ_CP040093.1_1438065_1439340_-	TIGR00665, DnaB, replicative DNA helicase	NA|87aa|up_8|NZ_CP040093.1_1439356_1439617_-	NA	NA|293aa|up_7|NZ_CP040093.1_1439603_1440482_-	pfam13730, HTH_36, Helix-turn-helix domain	NA|78aa|up_6|NZ_CP040093.1_1440812_1441046_-	NA	NA|57aa|up_5|NZ_CP040093.1_1441098_1441269_-	NA	NA|74aa|up_4|NZ_CP040093.1_1441323_1441545_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|90aa|up_3|NZ_CP040093.1_1441708_1441978_-	NA	NA|58aa|up_2|NZ_CP040093.1_1442000_1442174_-	NA	NA|69aa|up_1|NZ_CP040093.1_1442321_1442528_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|279aa|up_0|NZ_CP040093.1_1442661_1443498_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|193aa|down_0|NZ_CP040093.1_1444277_1444856_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|395aa|down_1|NZ_CP040093.1_1444856_1446041_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|83aa|down_2|NZ_CP040093.1_1446102_1446351_+	NA	NA|46aa|down_3|NZ_CP040093.1_1447104_1447242_-	NA	NA|243aa|down_4|NZ_CP040093.1_1447335_1448064_-	COG1149, COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]	NA|431aa|down_5|NZ_CP040093.1_1448131_1449424_-	PRK12310, PRK12310, hydroxylamine reductase; Provisional	NA|228aa|down_6|NZ_CP040093.1_1449535_1450219_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|185aa|down_7|NZ_CP040093.1_1450259_1450814_-	TIGR02227, Inactive_signal_peptidase_IA	NA|296aa|down_8|NZ_CP040093.1_1450958_1451846_+	COG4866, COG4866, Uncharacterized conserved protein [Function unknown]	NA|168aa|down_9|NZ_CP040093.1_1452331_1452835_-	PRK05590, PRK05590, hypothetical protein; Provisional
GCF_006016075.1_ASM601607v1	NZ_CP040093	Caloramator sp. E03 chromosome, complete genome	3	2162846-2173300	1,3,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas6,cas8b1,cas7,cas5,cas3,cas4,cas1,cas2	cas3,DEDDh,csa3,cas14j,csx20,csm6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,cas8b1,cas7,cas5,cas4,cas1,cas2,Cas14u_CAS-V,casR	Type I-B	GTTTATAGCCTACCTATGAGGGATTGAAAC,GTTTATAGCCTACCTATGAGGGATTGAAAC,GTTTATAGCCTACCTATGAGGGATTGAAAC,GTTTATAGCCTACCTATGAGGGATTGAAAC	30,30,30,30	0	0	NA	NA	NA:NA:NA:NA	154,156,156,154	156	TypeI-B	cas3,DEDDh,csa3,cas14j,csx20,csm6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,cas8b1,cas7,cas5,cas4,cas1,cas2,Cas14u_CAS-V,casR	NA,NA	NA|366aa|up_9|NZ_CP040093.1_2148753_2149851_+	cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases	NA|278aa|up_8|NZ_CP040093.1_2149847_2150681_+	pfam01116, F_bP_aldolase, Fructose-bisphosphate aldolase class-II	NA|456aa|up_7|NZ_CP040093.1_2151227_2152595_+	pfam02447, GntP_permease, GntP family permease	NA|507aa|up_6|NZ_CP040093.1_2152662_2154183_+	cd00366, FGGY, FGGY family of carbohydrate kinases	cas6|245aa|up_5|NZ_CP040093.1_2154388_2155123_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b1|633aa|up_4|NZ_CP040093.1_2155124_2157023_+	cd09730, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|294aa|up_3|NZ_CP040093.1_2157009_2157891_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas5|240aa|up_2|NZ_CP040093.1_2157895_2158615_+	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas3|770aa|up_1|NZ_CP040093.1_2158648_2160958_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|134aa|up_0|NZ_CP040093.1_2161068_2161470_+	pfam01797, Y1_Tnp, Transposase IS200 like	cas4|165aa|down_0|NZ_CP040093.1_2173338_2173833_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|331aa|down_1|NZ_CP040093.1_2173841_2174834_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|88aa|down_2|NZ_CP040093.1_2174835_2175099_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|676aa|down_3|NZ_CP040093.1_2175131_2177159_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|536aa|down_4|NZ_CP040093.1_2177508_2179116_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|169aa|down_5|NZ_CP040093.1_2179223_2179730_+	pfam06580, His_kinase, Histidine kinase	NA|349aa|down_6|NZ_CP040093.1_2179802_2180849_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|154aa|down_7|NZ_CP040093.1_2181054_2181516_+	cd16924, HATPase_YpdA-YehU-LytS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli YpdA, YehU, Bacillus subtilis LytS, and some hybrid sensor histidine kinases	NA|480aa|down_8|NZ_CP040093.1_2181516_2182956_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|503aa|down_9|NZ_CP040093.1_2183123_2184632_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
GCF_006016075.1_ASM601607v1	NZ_CP040093	Caloramator sp. E03 chromosome, complete genome	4	2500647-2500728	4	CRISPRCasFinder	no		cas3,DEDDh,csa3,cas14j,csx20,csm6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,cas8b1,cas7,cas5,cas4,cas1,cas2,Cas14u_CAS-V,casR	Orphan	TTACAAAAATAAGTAACCGTCCCCA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,cas14j,csx20,csm6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,cas8b1,cas7,cas5,cas4,cas1,cas2,Cas14u_CAS-V,casR	NA,NA|320aa|down_1|NZ_CP040093.1_2501950_2502910_+,NA|269aa|down_6|NZ_CP040093.1_2507649_2508456_-	NA|142aa|up_9|NZ_CP040093.1_2490320_2490746_+	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase	NA|137aa|up_8|NZ_CP040093.1_2490747_2491158_+	pfam01934, DUF86, Protein of unknown function DUF86	NA|103aa|up_7|NZ_CP040093.1_2491769_2492078_+	pfam03551, PadR, Transcriptional regulator PadR-like family	NA|206aa|up_6|NZ_CP040093.1_2492081_2492699_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|255aa|up_5|NZ_CP040093.1_2492703_2493468_+	pfam03649, UPF0014, Uncharacterized protein family (UPF0014)	NA|392aa|up_4|NZ_CP040093.1_2493510_2494686_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|606aa|up_3|NZ_CP040093.1_2495181_2496999_-	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain	NA|328aa|up_2|NZ_CP040093.1_2497029_2498013_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|296aa|up_1|NZ_CP040093.1_2498095_2498983_-	cd08420, PBP2_CysL_like, C-terminal substrate binding domain of LysR-type transcriptional regulator CysL, which activates the transcription of the cysJI operon encoding sulfite reductase, contains the type 2 periplasmic binding fold	NA|303aa|up_0|NZ_CP040093.1_2499220_2500129_-	pfam01797, Y1_Tnp, Transposase IS200 like	NA|321aa|down_0|NZ_CP040093.1_2500786_2501749_-	COG1316, LytR, Transcriptional regulator [Transcription]	NA|320aa|down_1|NZ_CP040093.1_2501950_2502910_+	NA	NA|302aa|down_2|NZ_CP040093.1_2503053_2503959_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|587aa|down_3|NZ_CP040093.1_2503979_2505740_+	TIGR03336, IOR_alpha, indolepyruvate ferredoxin oxidoreductase, alpha subunit	NA|190aa|down_4|NZ_CP040093.1_2505741_2506311_+	PRK06853, PRK06853, indolepyruvate oxidoreductase subunit beta; Reviewed	NA|219aa|down_5|NZ_CP040093.1_2506944_2507601_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|269aa|down_6|NZ_CP040093.1_2507649_2508456_-	NA	NA|472aa|down_7|NZ_CP040093.1_2508865_2510281_-	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]	NA|205aa|down_8|NZ_CP040093.1_2510599_2511214_+	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|571aa|down_9|NZ_CP040093.1_2511381_2513094_-	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]
GCF_006016075.1_ASM601607v1	NZ_CP040093	Caloramator sp. E03 chromosome, complete genome	5	2570145-2570242	5	CRISPRCasFinder	no	casR	cas3,DEDDh,csa3,cas14j,csx20,csm6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,cas8b1,cas7,cas5,cas4,cas1,cas2,Cas14u_CAS-V,casR	Orphan	GTTGATGGAATAGTTGGACCAAAAACTTT	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,cas14j,csx20,csm6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,cas8b1,cas7,cas5,cas4,cas1,cas2,Cas14u_CAS-V,casR	NA,NA	NA|320aa|up_9|NZ_CP040093.1_2561072_2562032_+	PLN02323, PLN02323, probable fructokinase	NA|172aa|up_8|NZ_CP040093.1_2562074_2562590_-	pfam07456, Hpre_diP_synt_I, Heptaprenyl diphosphate synthase component I	NA|127aa|up_7|NZ_CP040093.1_2562601_2562982_-	pfam07009, NusG_II, NusG domain II	NA|352aa|up_6|NZ_CP040093.1_2563303_2564359_+	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|479aa|up_5|NZ_CP040093.1_2564380_2565817_+	TIGR03701, mena_SCO4490, menaquinone biosynthesis decarboxylase, SCO4490 family	NA|286aa|up_4|NZ_CP040093.1_2565806_2566664_+	PRK12886, ubiA, prenyltransferase; Reviewed	NA|191aa|up_3|NZ_CP040093.1_2566668_2567241_+	PRK05920, PRK05920, aromatic acid decarboxylase; Validated	NA|310aa|up_2|NZ_CP040093.1_2567242_2568172_+	cd13652, PBP2_ThiY_THI5_like_1, Putative substrate binding domain of an ABC-type transporter similar to ThiY/THI5; the type 2 periplasmic binding protein fold	NA|252aa|up_1|NZ_CP040093.1_2568176_2568932_+	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|246aa|up_0|NZ_CP040093.1_2568927_2569665_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|519aa|down_0|NZ_CP040093.1_2571335_2572892_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|274aa|down_1|NZ_CP040093.1_2573077_2573899_-	COG3393, COG3393, Predicted acetyltransferase [General function prediction only]	casR|258aa|down_2|NZ_CP040093.1_2574366_2575140_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|312aa|down_3|NZ_CP040093.1_2575139_2576075_+	TIGR03168, 1-PFK, hexose kinase, 1-phosphofructokinase family	NA|148aa|down_4|NZ_CP040093.1_2576088_2576532_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|456aa|down_5|NZ_CP040093.1_2576570_2577938_+	PRK10712, PRK10712, PTS system fructose-specific transporter subunits IIBC; Provisional	NA|961aa|down_6|NZ_CP040093.1_2578272_2581155_+	PRK11359, PRK11359, cyclic-di-GMP phosphodiesterase; Provisional	NA|1431aa|down_7|NZ_CP040093.1_2581384_2585677_+	COG3580, COG3580, Uncharacterized protein conserved in bacteria [Function unknown]	NA|206aa|down_8|NZ_CP040093.1_2585698_2586316_+	COG3758, COG3758, Uncharacterized protein conserved in bacteria [Function unknown]	NA|207aa|down_9|NZ_CP040093.1_2586719_2587340_+	pfam18089, DAPG_hydrolase, DAPG hydrolase PhiG domain
