The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP040740	Enterococcus faecium strain VRE1 chromosome, complete genome	2718395	231051	276679	2718395	transposase	Streptococcus_phage(25.0%)	46	NA	NA
WP_002297404.1|231051_232302_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002288246.1|232711_233863_+	lactaldehyde reductase	NA	NA	NA	NA	NA
WP_002294170.1|233989_234748_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002288242.1|234847_235492_+	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
WP_002288240.1|235498_236506_+	sugar kinase	NA	NA	NA	NA	NA
WP_002288239.1|236521_237364_+	5-dehydro-4-deoxy-D-glucuronate isomerase	NA	NA	NA	NA	NA
WP_002294167.1|237383_238187_+	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_002288234.1|238435_239500_-	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA	NA
WP_002288233.1|239496_240582_-	phosphomevalonate kinase	NA	NA	NA	NA	NA
WP_002288232.1|240594_241572_-	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
WP_002288231.1|241564_242509_-	mevalonate kinase	NA	NA	NA	NA	NA
WP_002322895.1|242830_243484_+	deoxynucleoside kinase	NA	C1KFI3	Lactobacillus_virus	52.3	1.1e-58
WP_002294163.1|243568_244474_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_002294161.1|244475_245108_-	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_002293357.1|245427_245952_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.3	1.4e-14
WP_002289309.1|246023_246224_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_002289310.1|246276_246636_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_002289312.1|246887_248225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002289314.1|248272_250402_+	hydantoinase	NA	NA	NA	NA	NA
WP_002289315.1|250376_251066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099119790.1|251056_251245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002315615.1|252299_252494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289317.1|252543_252984_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_002289318.1|252987_253833_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_002294157.1|253981_255400_+	dipeptidase PepV	NA	NA	NA	NA	NA
WP_138820985.1|255456_256404_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_002289862.1|256626_256977_-	peptidase	NA	NA	NA	NA	NA
WP_002294156.1|257176_258256_+	glutamyl aminopeptidase	NA	NA	NA	NA	NA
WP_002287837.1|258399_258720_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_002287838.1|258741_259206_+	universal stress protein	NA	NA	NA	NA	NA
WP_002294153.1|259410_260016_+	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
WP_002302440.1|260235_261537_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	33.6	1.6e-48
WP_002297218.1|261675_262971_+|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002294152.1|263077_264367_-	PDZ domain-containing protein	NA	A0A1B1IT49	uncultured_Mediterranean_phage	30.2	5.7e-22
WP_002287841.1|264794_265274_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_002296569.1|265358_265868_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	34.8	2.8e-17
WP_002296570.1|265967_266618_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002291914.1|267068_268007_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_002291912.1|268019_269072_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002297185.1|269372_270668_-|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
WP_002296392.1|270859_271495_+	DUF998 domain-containing protein	NA	NA	NA	NA	NA
WP_002296391.1|271685_272477_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_002295743.1|272956_273865_+|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_002295755.1|273920_274418_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002340421.1|274454_275138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000997695.1|275500_276679_+|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP040740	Enterococcus faecium strain VRE1 chromosome, complete genome	2718395	280040	338390	2718395	tRNA,transposase	Staphylococcus_phage(33.33%)	51	NA	NA
WP_000222572.1|280040_280994_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002294735.1|281092_281809_+	DUF4767 domain-containing protein	NA	NA	NA	NA	NA
WP_002296623.1|282007_283303_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	37.5	3.9e-55
WP_025478783.1|283349_285398_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_002294732.1|286607_287849_+	serine/threonine transporter SstT	NA	NA	NA	NA	NA
WP_002294730.1|287995_288631_+	DUF998 domain-containing protein	NA	NA	NA	NA	NA
WP_002294728.1|288821_289562_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_138820987.1|289854_291027_-|transposase	IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.7e-121
WP_002321965.1|292641_293163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000997695.1|293201_294380_-|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_002287592.1|294449_295856_+	membrane protein	NA	NA	NA	NA	NA
WP_002287590.1|295842_297477_+	membrane protein	NA	NA	NA	NA	NA
WP_002323245.1|297578_298751_-|transposase	IS256-like element IS1542 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.3e-121
WP_002287588.1|298983_299817_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_002287587.1|299896_300886_+	glyceraldehyde 3-phosphate reductase	NA	NA	NA	NA	NA
WP_002287585.1|301174_301873_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002287584.1|302022_303339_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002287583.1|303355_304771_+	glycoside hydrolase family 1 protein	NA	NA	NA	NA	NA
WP_002287582.1|305234_305555_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002287579.1|305580_305898_+	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002287577.1|305926_307180_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002287575.1|307310_307775_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002287574.1|307803_308124_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287572.1|308154_309288_-	alcohol dehydrogenase catalytic domain-containing protein	NA	E3SJ82	Synechococcus_phage	24.8	2.5e-13
WP_002296725.1|309665_309872_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138820989.1|310061_311756_-	oleate hydratase	NA	NA	NA	NA	NA
WP_002287569.1|311812_311941_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002321251.1|311939_312188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287567.1|312379_312745_+	DUF1622 domain-containing protein	NA	NA	NA	NA	NA
WP_002287564.1|312741_313107_+	DUF1622 domain-containing protein	NA	NA	NA	NA	NA
WP_002287562.1|313198_314626_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287561.1|315095_316931_+	tyrosine decarboxylase	NA	NA	NA	NA	NA
WP_002287560.1|317235_318714_+	amino acid permease	NA	NA	NA	NA	NA
WP_002287558.1|318679_320011_+	amino acid permease	NA	NA	NA	NA	NA
WP_002287556.1|320124_322677_+	HAD-IC family P-type ATPase	NA	M1I547	Acanthocystis_turfacea_Chlorella_virus	29.7	3.6e-68
WP_002287554.1|322683_324123_-	HTH domain-containing protein	NA	NA	NA	NA	NA
WP_002294711.1|324097_324280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287552.1|324468_324831_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287551.1|325017_325875_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002287550.1|325994_326906_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_002287549.1|326912_328559_+	malonate decarboxylase subunit alpha	NA	NA	NA	NA	NA
WP_002287548.1|328660_328960_+	malonate decarboxylase subunit delta	NA	NA	NA	NA	NA
WP_002287546.1|328949_330626_+	biotin-independent malonate decarboxylase subunit beta	NA	NA	NA	NA	NA
WP_002287544.1|330629_331223_+	malonate decarboxylase holo-ACP synthase	NA	NA	NA	NA	NA
WP_002287542.1|331246_332323_+	acyltransferase	NA	NA	NA	NA	NA
WP_002287541.1|332347_333217_+	triphosphoribosyl-dephospho-CoA synthase MdcB	NA	NA	NA	NA	NA
WP_002287538.1|333327_334092_+	TIM44-like domain-containing protein	NA	NA	NA	NA	NA
WP_002304137.1|334104_334287_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287536.1|334580_336674_+	BglG family transcription antiterminator	NA	NA	NA	NA	NA
WP_002287534.1|336698_337001_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_086953915.1|337050_338390_-|transposase	IS3-like element ISEnfa3 family transposase	transposase	A0A1B1P773	Bacillus_phage	52.7	2.6e-78
>prophage 3
NZ_CP040740	Enterococcus faecium strain VRE1 chromosome, complete genome	2718395	547991	610898	2718395	integrase,tRNA,transposase	Streptococcus_phage(23.81%)	60	587183:587200	602906:602923
WP_002286726.1|547991_549113_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_002286721.1|549358_550780_+	arginine-ornithine antiporter	NA	NA	NA	NA	NA
WP_002286711.1|550793_551912_+	aminotransferase	NA	NA	NA	NA	NA
WP_002286708.1|551971_553264_-	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_002326790.1|553413_553974_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002286704.1|554102_554480_+	DUF1033 family protein	NA	NA	NA	NA	NA
WP_002304230.1|554412_556485_+	DNA topoisomerase III	NA	NA	NA	NA	NA
WP_002289773.1|556695_557643_-	glycosyltransferase family 2 protein	NA	V5USA4	Oenococcus_phage	51.0	5.0e-84
WP_002289775.1|557888_558353_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	38.7	8.8e-18
WP_002289776.1|558414_559458_-	putative sulfate exporter family transporter	NA	NA	NA	NA	NA
WP_101699691.1|559834_560800_-	TDT family transporter	NA	NA	NA	NA	NA
WP_002297022.1|561033_561879_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002353096.1|561887_562085_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002291183.1|562069_563257_+	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
WP_002295166.1|563262_563619_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	42.3	2.7e-22
WP_002291179.1|563620_563959_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
WP_002304234.1|564353_565388_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	35.1	4.2e-28
WP_138820993.1|565380_566067_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_002287678.1|566090_566939_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002297218.1|567050_568346_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002287679.1|568657_569431_+	Fe-S cluster assembly ATPase SufC	NA	A0A2R8FG22	Brazilian_cedratvirus	28.8	2.1e-08
WP_002287681.1|569443_570730_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_002287683.1|570726_571962_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	47.7	3.9e-113
WP_002287684.1|571948_572419_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_002287686.1|572423_573815_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_002287688.1|573912_575055_-|integrase	site-specific integrase	integrase	A0A1S5S7K9	Streptococcus_phage	36.3	4.6e-60
WP_002287690.1|575105_575903_-	helix-turn-helix transcriptional regulator	NA	Q9AZH9	Lactococcus_phage	39.0	2.6e-09
WP_002287692.1|576104_576404_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002287693.1|576668_577544_+	hypothetical protein	NA	M4ZS60	Bacillus_phage	37.8	3.3e-13
WP_002321927.1|577540_577759_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287694.1|577745_580373_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002297018.1|580387_580606_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002329547.1|582124_582439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287697.1|582491_583265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287739.1|583369_583615_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002287698.1|583770_584622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287699.1|584654_586091_+	hypothetical protein	NA	A0A1S5SA14	Streptococcus_phage	29.4	2.5e-10
WP_002287700.1|586092_586578_+	TIR domain-containing protein	NA	NA	NA	NA	NA
587183:587200	attL	TGACCAGATTTTGACCAG	NA	NA	NA	NA
WP_002287705.1|587205_588348_-|integrase	site-specific integrase	integrase	A0A1S5S7K9	Streptococcus_phage	34.8	3.3e-58
WP_002287709.1|588386_589121_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002353450.1|589122_589308_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287723.1|589352_589628_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002287725.1|589725_591723_+	hypothetical protein	NA	A0A1Z1LZK7	Bacillus_phage	23.8	5.2e-22
WP_002287726.1|591798_592134_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002296546.1|592262_592478_+	helix-turn-helix transcriptional regulator	NA	A0A139ZPI6	Marinitoga_camini_virus	41.8	4.7e-06
WP_002287729.1|592514_592880_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_002287730.1|592916_593243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287731.1|593396_594122_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287732.1|594631_596224_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	50.9	6.8e-126
WP_002287733.1|596216_597461_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	26.9	3.3e-19
WP_002287735.1|597474_600624_+	type I restriction endonuclease subunit R	NA	NA	NA	NA	NA
WP_002349184.1|600775_600958_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002322125.1|601341_602805_-|transposase	IS1182-like element ISEfa7 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	48.0	2.0e-124
WP_073120029.1|603332_603599_-	hypothetical protein	NA	NA	NA	NA	NA
602906:602923	attR	TGACCAGATTTTGACCAG	NA	NA	NA	NA
WP_002288539.1|604117_604783_-	helix-turn-helix domain-containing protein	NA	A0A2I7SCV6	Paenibacillus_phage	47.8	1.1e-05
WP_002288541.1|604908_606945_+	DUF1430 domain-containing protein	NA	NA	NA	NA	NA
WP_002291166.1|606948_607587_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.8	5.9e-12
WP_002288545.1|607614_608043_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138820996.1|608262_609435_-|transposase	IS256-like element IS1542 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	89.2	4.4e-122
WP_002296840.1|609710_610898_-|transposase	IS256-like element IS16 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.3	8.2e-92
>prophage 4
NZ_CP040740	Enterococcus faecium strain VRE1 chromosome, complete genome	2718395	916406	975316	2718395	tRNA,transposase	Staphylococcus_phage(20.0%)	43	NA	NA
WP_002287651.1|916406_918347_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	35.2	3.3e-114
WP_002287653.1|918570_919419_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002302928.1|919712_921866_+	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_002297218.1|922099_923395_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002296740.1|923573_924383_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_002295362.1|924675_926112_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	29.0	3.8e-43
WP_002290958.1|926281_927478_+	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_002295359.1|927539_927725_-	YjzD family protein	NA	NA	NA	NA	NA
WP_002303521.1|927955_931270_+	DNA polymerase III subunit alpha	NA	R4TB75	Streptomyces_phage	33.0	1.8e-149
WP_002304759.1|931437_932400_+	6-phosphofructokinase	NA	NA	NA	NA	NA
WP_002295355.1|932473_934258_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_002295354.1|934292_935195_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002295352.1|935380_935950_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_002290970.1|936007_936187_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_002298263.1|936356_937778_+	NADP-dependent phosphogluconate dehydrogenase	NA	A0A1D8KPW3	Synechococcus_phage	31.1	4.2e-34
WP_002290973.1|937970_938657_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	31.2	4.8e-28
WP_002298265.1|938653_940159_+	HAMP domain-containing histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	25.1	3.9e-06
WP_002322034.1|942576_942774_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002317647.1|947657_948533_+	PRD domain-containing protein	NA	NA	NA	NA	NA
WP_002288811.1|948636_949401_+	carbohydrate deacetylase	NA	NA	NA	NA	NA
WP_045136023.1|949417_950830_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_002288815.1|952183_952642_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_045136022.1|952933_954235_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002295336.1|954261_954522_+	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_002307036.1|955036_955225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288819.1|955520_956756_-	glycosyl transferase	NA	NA	NA	NA	NA
WP_002288821.1|957322_958150_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002288823.1|958422_959193_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_045136021.1|959410_960478_+	L-ascorbate 6-phosphate lactonase	NA	NA	NA	NA	NA
WP_010728432.1|960495_960957_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_002324626.1|960976_962461_+	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA	NA
WP_045136020.1|962503_962803_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002288832.1|962817_963456_+	3-keto-L-gulonate-6-phosphate decarboxylase UlaD	NA	NA	NA	NA	NA
WP_002289048.1|963460_964321_+	L-ribulose-5-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_002295327.1|964310_965021_+	L-ribulose-5-phosphate 4-epimerase	NA	NA	NA	NA	NA
WP_002289050.1|965252_965687_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002289065.1|965783_966083_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289063.1|966351_966546_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002323245.1|966804_967977_+|transposase	IS256-like element IS1542 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.3e-121
WP_000997695.1|968380_969559_+|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_138820996.1|969744_970917_+|transposase	IS256-like element IS1542 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	89.2	4.4e-122
WP_000997695.1|971993_973172_-|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_002297404.1|974065_975316_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
>prophage 5
NZ_CP040740	Enterococcus faecium strain VRE1 chromosome, complete genome	2718395	1127378	1136439	2718395		Gordonia_phage(16.67%)	9	NA	NA
WP_002288023.1|1127378_1128674_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.1	4.5e-19
WP_002297115.1|1128853_1129231_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288021.1|1129486_1130215_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	41.4	4.6e-45
WP_002295474.1|1130214_1130469_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002302316.1|1130470_1131142_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002299012.1|1131142_1133365_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.4	1.1e-150
WP_002299010.1|1133349_1134789_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.9	2.4e-53
WP_002299008.1|1134820_1135864_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.7	2.7e-62
WP_002302314.1|1135860_1136439_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.4	9.0e-28
>prophage 6
NZ_CP040740	Enterococcus faecium strain VRE1 chromosome, complete genome	2718395	1394441	1433942	2718395	integrase,transposase	Synechococcus_phage(27.27%)	43	1425660:1425675	1435381:1435396
WP_002295743.1|1394441_1395350_-|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_002303251.1|1395580_1396711_-	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
WP_002302440.1|1397294_1398596_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	33.6	1.6e-48
WP_002293303.1|1398699_1398900_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	77.3	3.9e-23
WP_002296656.1|1399651_1400365_-	HAD family phosphatase	NA	A0A1D8KPI1	Synechococcus_phage	23.0	5.4e-06
WP_002296654.1|1400357_1401443_-	mannonate dehydratase	NA	NA	NA	NA	NA
WP_002296653.1|1401459_1401903_-	PTS fructose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002321678.1|1401936_1402290_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296650.1|1402401_1402803_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296648.1|1402839_1403349_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002303107.1|1403370_1404228_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
WP_002296646.1|1404245_1405079_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002303106.1|1405092_1405890_-	iron-containing alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_002321677.1|1405922_1406207_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_002296641.1|1406203_1407205_-	2-hydroxyacid dehydrogenase	NA	M1H9J0	Paramecium_bursaria_Chlorella_virus	29.0	2.8e-24
WP_102993993.1|1407206_1408109_-	decarboxylating 6-phosphogluconate dehydrogenase	NA	A0A1D8KGX1	Synechococcus_phage	35.0	1.8e-51
WP_002296639.1|1408272_1409121_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002296638.1|1409766_1409973_+	DUF3955 domain-containing protein	NA	NA	NA	NA	NA
WP_002296637.1|1410174_1411176_-	alpha/beta hydrolase	NA	M1PGN2	Moumouvirus	31.8	2.5e-09
WP_002311095.1|1411180_1413094_-	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA	NA
WP_002296634.1|1413261_1413768_-	cysteine hydrolase	NA	NA	NA	NA	NA
WP_002296633.1|1413927_1414368_+	Spx/MgsR family RNA polymerase-binding regulatory protein	NA	NA	NA	NA	NA
WP_002296632.1|1414393_1415551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296631.1|1415553_1415910_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296629.1|1416207_1417182_-	LPXTG-anchored fibrinogen/nidogen-binding adhesin SgrA	NA	NA	NA	NA	NA
WP_105459812.1|1418402_1419290_+	rotamase	NA	NA	NA	NA	NA
WP_002311093.1|1419883_1420579_-	fructose-6-phosphate aldolase	NA	E3SKN5	Synechococcus_phage	31.5	1.0e-22
WP_002296624.1|1420562_1420961_-	PTS glucitol/sorbitol transporter subunit IIA	NA	NA	NA	NA	NA
WP_002297404.1|1421369_1422620_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002296760.1|1422761_1423757_-	PTS glucitol/sorbitol transporter subunit IIB	NA	NA	NA	NA	NA
WP_002289423.1|1423774_1424329_-	PTS sorbitol transporter subunit IIC	NA	NA	NA	NA	NA
WP_002289422.1|1424316_1424808_-	DeoR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002289421.1|1424800_1426669_-	HTH domain-containing protein	NA	NA	NA	NA	NA
1425660:1425675	attL	AAAGGATACTTTTTTT	NA	NA	NA	NA
WP_002289420.1|1426687_1427488_-	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	26.2	2.6e-09
WP_002289418.1|1427711_1427927_+	DUF378 domain-containing protein	NA	NA	NA	NA	NA
WP_002303864.1|1428065_1428551_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002289415.1|1429006_1429420_+	Hsp20/alpha crystallin family protein	NA	A0A1B2LRT2	Wolbachia_phage	31.5	2.1e-07
WP_002322258.1|1429556_1429817_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303865.1|1429744_1429984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002321532.1|1429934_1430225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000997695.1|1430470_1431649_+|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_000222572.1|1431804_1432758_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002288357.1|1432814_1433942_+|integrase	site-specific integrase	integrase	A0A2I7SCV1	Paenibacillus_phage	55.5	1.8e-109
1435381:1435396	attR	AAAAAAAGTATCCTTT	NA	NA	NA	NA
>prophage 7
NZ_CP040740	Enterococcus faecium strain VRE1 chromosome, complete genome	2718395	1680648	1736300	2718395	protease,tRNA,transposase	Streptococcus_phage(28.57%)	61	NA	NA
WP_002288576.1|1680648_1681902_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	55.3	7.7e-24
WP_002347404.1|1681972_1682458_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_002326253.1|1682480_1683239_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	36.9	6.5e-26
WP_002322842.1|1683254_1684433_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	48.9	5.1e-102
WP_002326254.1|1684662_1686783_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	58.3	6.3e-220
WP_099119703.1|1686718_1686994_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002326255.1|1687005_1687731_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288586.1|1687720_1688230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138821021.1|1688299_1689748_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	29.3	1.3e-19
WP_002293942.1|1689747_1690464_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.7	1.0e-33
WP_002288595.1|1690444_1690795_-	SdpI family protein	NA	NA	NA	NA	NA
WP_002288592.1|1690938_1691712_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_077149121.1|1692286_1692469_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002323892.1|1692682_1692997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002324322.1|1693101_1694280_+|transposase	IS256-like element ISEfm2 family transposase	transposase	NA	NA	NA	NA
WP_002321266.1|1694615_1694855_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002289617.1|1695216_1695477_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289618.1|1695661_1696159_-	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_002323008.1|1696288_1696999_-	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_002297645.1|1697011_1698676_-	acetolactate synthase AlsS	NA	NA	NA	NA	NA
WP_002297646.1|1698881_1699544_-	DUF624 domain-containing protein	NA	NA	NA	NA	NA
WP_002325788.1|1699553_1700369_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002288989.1|1700630_1701074_-	LysR family transcriptional regulator substrate-binding protein	NA	NA	NA	NA	NA
WP_002321036.1|1701207_1701546_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002302962.1|1701533_1701911_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000997695.1|1702073_1703252_-|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_002322902.1|1703480_1704674_+	MFS transporter	NA	NA	NA	NA	NA
WP_002288984.1|1704839_1705262_-	HTH domain-containing protein	NA	NA	NA	NA	NA
WP_002303955.1|1705851_1706307_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002293154.1|1706274_1706472_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288982.1|1706468_1707641_-	class C sortase	NA	NA	NA	NA	NA
WP_002288981.1|1707846_1708662_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_002303960.1|1709272_1710286_-	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA	NA
WP_002303962.1|1710316_1710775_-	cell wall anchor	NA	NA	NA	NA	NA
WP_002303963.1|1710771_1713099_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_002288972.1|1713740_1713854_+|protease	CAAX amino protease	protease	NA	NA	NA	NA
WP_002288970.1|1713941_1714235_-	DUF2087 domain-containing protein	NA	NA	NA	NA	NA
WP_002311684.1|1714271_1714457_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286913.1|1714492_1714840_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_002293717.1|1714975_1715737_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_002346829.1|1715726_1716248_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_002297190.1|1716417_1717209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002290277.1|1717333_1717585_-	KH domain-containing protein	NA	NA	NA	NA	NA
WP_002290274.1|1717596_1717872_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_002293714.1|1718124_1718679_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	29.3	2.3e-12
WP_002297192.1|1718757_1719279_-	dihydrofolate reductase	NA	NA	NA	NA	NA
WP_002293710.1|1719282_1719861_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_002293709.1|1719972_1721391_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_002293708.1|1721411_1721750_-	putative DNA-binding protein	NA	NA	NA	NA	NA
WP_002297194.1|1721709_1722213_-	DUF523 domain-containing protein	NA	NA	NA	NA	NA
WP_002293705.1|1722343_1723048_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.2	1.4e-38
WP_002322835.1|1723044_1724781_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	34.1	9.3e-28
WP_002293701.1|1724883_1727358_-	cation-translocating P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	29.2	1.7e-46
WP_002289807.1|1727683_1728574_-	phosphate ABC transporter substrate-binding protein PstS family protein	NA	NA	NA	NA	NA
WP_002293699.1|1728770_1729253_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289810.1|1729460_1729826_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002322761.1|1729916_1730234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086956687.1|1730599_1731761_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
WP_002323245.1|1732317_1733490_-|transposase	IS256-like element IS1542 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.3e-121
WP_002295271.1|1733665_1734640_-	choloylglycine hydrolase family protein	NA	M1HVK5	Paramecium_bursaria_Chlorella_virus	31.8	5.4e-25
WP_002297404.1|1735049_1736300_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
>prophage 8
NZ_CP040740	Enterococcus faecium strain VRE1 chromosome, complete genome	2718395	1950134	2009008	2718395	tRNA,tail,plate,transposase,holin	Enterococcus_phage(23.08%)	60	NA	NA
WP_002303350.1|1950134_1951094_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002295061.1|1951314_1952418_-	L-lactate oxidase	NA	NA	NA	NA	NA
WP_002295059.1|1952639_1953110_-	DUF4809 family protein	NA	NA	NA	NA	NA
WP_000202380.1|1953366_1954686_+|transposase	IS1380-like element IS1678 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	82.7	4.8e-210
WP_002302982.1|1955126_1956767_+	NAD-dependent malic enzyme	NA	NA	NA	NA	NA
WP_002302984.1|1956920_1958243_+	2-hydroxycarboxylate transporter family protein	NA	NA	NA	NA	NA
WP_002295053.1|1958304_1958736_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002302985.1|1958799_1959636_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_002295049.1|1959825_1960128_-	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_002290886.1|1960153_1960585_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_002290885.1|1960581_1960848_-	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_002290883.1|1961101_1961827_-	DNA/RNA non-specific endonuclease	NA	NA	NA	NA	NA
WP_002289867.1|1962379_1963132_+	threonine/serine exporter family protein	NA	NA	NA	NA	NA
WP_002289868.1|1963147_1963627_+	threonine/serine exporter	NA	NA	NA	NA	NA
WP_138821031.1|1963877_1965458_-	ABC transporter	NA	NA	NA	NA	NA
WP_002287741.1|1965450_1966194_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.9	3.6e-29
WP_002287742.1|1966369_1967146_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_002287743.1|1967393_1968230_-	TIGR03943 family protein	NA	NA	NA	NA	NA
WP_002287744.1|1968240_1969170_-	permease	NA	NA	NA	NA	NA
WP_002287745.1|1969361_1969715_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_002287746.1|1969788_1970445_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_002287747.1|1970670_1972605_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	31.9	1.1e-58
WP_002321414.1|1972690_1973914_-	glucuronyl hydrolase	NA	NA	NA	NA	NA
WP_002321415.1|1973907_1975806_-	DUF2264 domain-containing protein	NA	NA	NA	NA	NA
WP_002287753.1|1975799_1976918_-	glycosyl hydrolase family 88	NA	NA	NA	NA	NA
WP_002302991.1|1977000_1977834_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002287755.1|1977826_1978744_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_002287756.1|1978766_1978946_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287757.1|1978970_1980095_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_002296511.1|1980277_1981186_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002287759.1|1981326_1982940_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000222572.1|1983590_1984544_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_138821033.1|1984577_1985807_-	GTPase HflX	NA	NA	NA	NA	NA
WP_002289405.1|1985808_1986726_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_002289404.1|1986729_1987467_-	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	40.0	2.3e-12
WP_002289403.1|1987557_1988085_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289402.1|1988264_1988858_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.6	8.9e-55
WP_002289401.1|1988961_1989447_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA	NA
WP_002296291.1|1989599_1989797_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289400.1|1989891_1991652_-	multidrug efflux ABC transporter subunit EfrB	NA	W8CYL7	Bacillus_phage	28.6	2.5e-52
WP_002296290.1|1991648_1993379_-	multidrug efflux ABC transporter subunit EfrA	NA	W8CYL7	Bacillus_phage	27.6	2.1e-43
WP_002287947.1|1993771_1993984_+	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_002287948.1|1993985_1995665_+	ribonuclease J	NA	NA	NA	NA	NA
WP_073119932.1|1995675_1995960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002294067.1|1995918_1996119_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	71.2	3.7e-21
WP_002347086.1|1997194_1997593_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305550.1|1997585_1998038_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044384583.1|1998024_1998432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025477679.1|1998410_1998713_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302755.1|1999707_2000916_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002302753.1|2001030_2002041_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	66.1	2.8e-61
WP_002349260.1|2002037_2002427_-|holin	phage holin family protein	holin	F0PIJ6	Enterococcus_phage	69.7	9.0e-40
WP_002302750.1|2002526_2002667_-	XkdX family protein	NA	A0A2H4JD72	uncultured_Caudovirales_phage	54.8	1.1e-08
WP_002332774.1|2002659_2003007_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002347378.1|2003020_2003515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002319918.1|2003514_2003964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303306.1|2003967_2004588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002347082.1|2004587_2005496_-|plate	phage baseplate upper protein	plate	A0A1P8BLW0	Lactococcus_phage	25.2	7.8e-10
WP_002347081.1|2005508_2008271_-	CHAP domain-containing protein	NA	Q9AZX5	Lactococcus_phage	39.1	6.0e-138
WP_002303299.1|2008267_2009008_-|tail	tail protein	tail	NA	NA	NA	NA
>prophage 9
NZ_CP040740	Enterococcus faecium strain VRE1 chromosome, complete genome	2718395	2012369	2046494	2718395	portal,tRNA,tail,head,terminase,transposase	Enterococcus_phage(40.91%)	46	NA	NA
WP_002303295.1|2012369_2012978_-|tail	tail protein	tail	NA	NA	NA	NA
WP_002298045.1|2012978_2013356_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002298046.1|2013357_2013753_-	HK97 gp10 family phage protein	NA	NA	NA	NA	NA
WP_002298048.1|2013745_2014117_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002298050.1|2014116_2014458_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002311614.1|2014469_2014685_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303293.1|2014707_2015598_-	DUF5309 domain-containing protein	NA	NA	NA	NA	NA
WP_002349163.1|2015612_2016314_-	DUF4355 domain-containing protein	NA	NA	NA	NA	NA
WP_002305854.1|2016232_2016424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002298058.1|2016362_2016680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002298060.1|2016681_2017560_-|head	phage head morphogenesis protein	head	NA	NA	NA	NA
WP_002303292.1|2017651_2019181_-|portal	phage portal protein	portal	A0A0S2MVB2	Bacillus_phage	25.0	1.3e-28
WP_002298064.1|2019192_2020608_-	hypothetical protein	NA	C9E2I7	Enterococcus_phage	79.7	1.0e-218
WP_002303291.1|2020600_2021434_-|terminase	small subunit of terminase	terminase	D2IYW0	Enterococcus_phage	68.8	1.5e-79
WP_002332757.1|2021592_2021823_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303289.1|2022038_2022299_-	hypothetical protein	NA	A0A0S2MYE7	Enterococcus_phage	51.1	7.9e-16
WP_002287525.1|2023275_2024424_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
WP_002287522.1|2024440_2024845_-|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_002303288.1|2025139_2025526_-	hypothetical protein	NA	O34053	Streptococcus_phage	53.5	1.6e-28
WP_002303286.1|2025538_2025952_-	autolysin	NA	C9E2P5	Enterococcus_phage	81.0	5.6e-56
WP_002303285.1|2026028_2026325_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303283.1|2026321_2026525_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303282.1|2026531_2026762_-	hypothetical protein	NA	A0A0S2MYD2	Enterococcus_phage	52.1	1.6e-12
WP_002303281.1|2026758_2027142_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303280.1|2027138_2027681_-	DUF1642 domain-containing protein	NA	Q8W5X2	Listeria_phage	40.7	3.9e-17
WP_002303279.1|2027677_2028148_-	hypothetical protein	NA	A0A0A7RWK2	Clostridium_phage	33.8	9.6e-12
WP_002305847.1|2028149_2028332_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002317474.1|2028324_2028642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002299339.1|2028638_2029490_-	ATP-binding protein	NA	A0A0P0I3L9	Lactobacillus_phage	30.2	2.3e-27
WP_002303278.1|2029504_2030305_-	hypothetical protein	NA	B4XYS6	Lactobacillus_phage	54.5	8.9e-58
WP_002303277.1|2030347_2031238_-	hypothetical protein	NA	D2IYT9	Enterococcus_phage	84.5	6.2e-137
WP_002303275.1|2031239_2032181_-	endonuclease	NA	D2IZK1	Enterococcus_phage	78.9	2.7e-146
WP_002303273.1|2032413_2032749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002304466.1|2033000_2033240_+	DUF2188 domain-containing protein	NA	E8ZD70	Streptococcus_phage	81.1	1.8e-27
WP_002304465.1|2033548_2033737_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002304464.1|2033775_2034006_+	DUF2188 domain-containing protein	NA	E8ZD70	Streptococcus_phage	49.3	4.4e-10
WP_002303266.1|2034173_2034440_-	helix-turn-helix transcriptional regulator	NA	A0A1W6JP54	Staphylococcus_phage	52.7	5.4e-12
WP_002303265.1|2034639_2035344_+	LexA family transcriptional regulator	NA	D7RWF2	Brochothrix_phage	42.4	6.2e-39
WP_002303264.1|2035430_2036720_+	DUF4041 domain-containing protein	NA	M1NRY5	Streptococcus_phage	74.0	5.6e-46
WP_002303263.1|2036785_2038138_+	recombinase family protein	NA	D2IZV7	Enterococcus_phage	55.3	1.7e-133
WP_002304462.1|2038032_2038704_-	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_002287951.1|2038758_2039412_-	HAD family phosphatase	NA	NA	NA	NA	NA
WP_002294071.1|2039401_2040715_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_002287953.1|2041024_2043670_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	42.9	4.0e-163
WP_002287954.1|2044062_2044710_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_002287955.1|2045282_2046494_-|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
>prophage 10
NZ_CP040740	Enterococcus faecium strain VRE1 chromosome, complete genome	2718395	2092079	2153969	2718395	protease,tRNA,transposase	Enterococcus_phage(17.65%)	55	NA	NA
WP_002287525.1|2092079_2093228_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
WP_002287522.1|2093244_2093649_-|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_002287126.1|2093810_2094995_-	beta-aspartyl-peptidase	NA	NA	NA	NA	NA
WP_002294022.1|2095151_2096891_-	putative basic amino acid antiporter YfcC	NA	NA	NA	NA	NA
WP_002287124.1|2097663_2098278_-	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_002294021.1|2098883_2099261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287122.1|2099560_2100442_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	50.3	1.3e-73
WP_002297404.1|2100851_2102102_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002287121.1|2102267_2103287_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_002287119.1|2103919_2104924_-	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_002287118.1|2104936_2105986_-	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_002287116.1|2106002_2106824_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
WP_002287115.1|2106810_2107590_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002287114.1|2107606_2108077_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002287112.1|2108088_2108508_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002302892.1|2108588_2111357_-	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_002294014.1|2111556_2111781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002294013.1|2112559_2114275_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.3	1.7e-50
WP_002289511.1|2114277_2116041_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.2	1.5e-44
WP_002289509.1|2116080_2116617_-	folate family ECF transporter S component	NA	NA	NA	NA	NA
WP_002289508.1|2116939_2117362_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_002289507.1|2117570_2118680_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	Q6GZ03	Mycoplasma_phage	33.0	1.2e-20
WP_002294011.1|2118803_2119433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002294004.1|2119883_2120768_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_002305490.1|2120760_2121330_-	ribonuclease M5	NA	NA	NA	NA	NA
WP_002294001.1|2121322_2122099_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_002294000.1|2122253_2123576_-	amino acid permease	NA	NA	NA	NA	NA
WP_002293998.1|2123750_2124338_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002289325.1|2124816_2126826_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	38.3	1.4e-96
WP_002289337.1|2127093_2127372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002289327.1|2127468_2128290_+	NUDIX hydrolase	NA	G3MA14	Bacillus_virus	32.8	2.7e-25
WP_071974456.1|2128282_2128471_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138821037.1|2128574_2129585_-	helix-turn-helix domain-containing protein	NA	A0A288TXV8	Enterococcus_phage	40.8	2.8e-56
WP_002289330.1|2129596_2130550_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	33.2	3.0e-20
WP_002289332.1|2130539_2131610_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.5e-20
WP_002289334.1|2131615_2132659_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002293573.1|2132659_2133601_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002293992.1|2133684_2134032_+	DUF3899 domain-containing protein	NA	NA	NA	NA	NA
WP_002289796.1|2134101_2135763_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002293990.1|2135941_2136061_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_002289795.1|2136308_2136857_-	aminoglycoside N-acetyltransferase AAC(6')-Ii	NA	NA	NA	NA	NA
WP_002303623.1|2137409_2138513_+	iron-containing alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_002321602.1|2138509_2138716_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002293986.1|2138705_2139773_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_002289244.1|2140002_2142450_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.7	8.1e-86
WP_002289243.1|2142638_2144075_-	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	29.4	1.4e-48
WP_002289242.1|2144393_2145209_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002289241.1|2145226_2145862_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.4	8.4e-27
WP_002303625.1|2145880_2146522_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_002289239.1|2147001_2147487_+|tRNA	prolyl-tRNA synthetase associated domain-containing protein	tRNA	NA	NA	NA	NA
WP_002321669.1|2147758_2149894_-	collagen-binding MSCRAMM adhesin Acm	NA	NA	NA	NA	NA
WP_002287525.1|2150436_2151585_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
WP_002287522.1|2151601_2152006_-|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_002289236.1|2152575_2153208_+	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_002303626.1|2153330_2153969_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 11
NZ_CP040740	Enterococcus faecium strain VRE1 chromosome, complete genome	2718395	2379341	2464416	2718395	protease,tRNA,transposase	Bacillus_phage(29.41%)	56	NA	NA
WP_002297218.1|2379341_2380637_+|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002294493.1|2380791_2381475_+	rhamnogalacturonan acetylesterase	NA	NA	NA	NA	NA
WP_002285996.1|2381476_2382313_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA	NA
WP_010729265.1|2382323_2384078_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	2.4e-39
WP_002285994.1|2384353_2384695_-	YlbF family regulator	NA	A0A1X9I5Y8	Streptococcus_phage	34.9	1.3e-10
WP_002294492.1|2384762_2386934_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_002285989.1|2387144_2388002_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_002285988.1|2388072_2388930_-	ROK family protein	NA	NA	NA	NA	NA
WP_002285985.1|2388914_2391617_-	alpha-mannosidase	NA	NA	NA	NA	NA
WP_002294491.1|2391629_2392919_-	glycoside hydrolase family 125 protein	NA	NA	NA	NA	NA
WP_002302559.1|2393068_2394115_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002302560.1|2394116_2396270_+	alpha-1,2-mannosidase	NA	NA	NA	NA	NA
WP_002297218.1|2396535_2397831_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002304851.1|2398264_2399716_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_002285976.1|2399712_2401437_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_002285975.1|2401429_2402044_-	DUF624 domain-containing protein	NA	NA	NA	NA	NA
WP_077863504.1|2402080_2402278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002285974.1|2402388_2403846_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002285972.1|2403886_2404807_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002285971.1|2404818_2405766_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_002285969.1|2406244_2406964_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_002285966.1|2407012_2408659_-	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_000202380.1|2408906_2410226_+|transposase	IS1380-like element IS1678 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	82.7	4.8e-210
WP_002285964.1|2410521_2411112_+	transporter	NA	NA	NA	NA	NA
WP_002294486.1|2411203_2412709_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_002285961.1|2412792_2414145_-	PTS cellobiose transporter subunit IIC	NA	NA	NA	NA	NA
WP_002285960.1|2414144_2414663_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002285954.1|2414678_2415005_-	PTS cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002285949.1|2415017_2416997_-	BglG family transcription antiterminator	NA	NA	NA	NA	NA
WP_002285948.1|2417017_2417332_-	PTS cellobiose transporter subunit IIB	NA	NA	NA	NA	NA
WP_002285944.1|2417499_2417793_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_002321621.1|2417870_2418983_-	FUSC family protein	NA	NA	NA	NA	NA
WP_002285932.1|2419369_2419549_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_002321622.1|2419542_2419755_+	hypothetical protein	NA	NA	NA	NA	NA
WP_104674935.1|2419742_2419913_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002285922.1|2426481_2427243_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002285920.1|2427342_2429064_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.0	1.7e-37
WP_002285918.1|2429078_2430863_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.2	2.7e-46
WP_002285917.1|2431243_2432797_-	glycosyl hydrolase	NA	NA	NA	NA	NA
WP_002285916.1|2433144_2435559_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	72.8	0.0e+00
WP_002301403.1|2435985_2438004_-	LysM peptidoglycan-binding domain-containing protein	NA	Q9ZXE4	Bacillus_phage	39.6	5.8e-13
WP_002285911.1|2438373_2439030_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_002285909.1|2439029_2439986_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	57.4	3.3e-43
WP_002285906.1|2439985_2440552_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	42.8	2.2e-34
WP_002303072.1|2440756_2442526_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.5	2.7e-54
WP_002285883.1|2442528_2444241_-	ABC transporter ATP-binding protein	NA	F2Y302	Organic_Lake_phycodnavirus	25.4	1.2e-14
WP_002303070.1|2444355_2445024_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002295567.1|2445090_2445879_-	esterase family protein	NA	NA	NA	NA	NA
WP_002295566.1|2445961_2447434_-	MFS transporter	NA	NA	NA	NA	NA
WP_002289731.1|2447563_2448757_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	72.0	1.3e-150
WP_002297185.1|2449040_2450336_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
WP_002322034.1|2455975_2456173_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296055.1|2458588_2460085_-|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	40.9	8.7e-91
WP_002290055.1|2460195_2461200_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_002296053.1|2461200_2462088_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_002287418.1|2462304_2464416_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	C7U047	Ostreococcus_tauri_virus	50.3	9.1e-110
>prophage 12
NZ_CP040740	Enterococcus faecium strain VRE1 chromosome, complete genome	2718395	2583974	2600870	2718395		Streptococcus_phage(92.86%)	18	NA	NA
WP_002297366.1|2583974_2584289_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	53.4	1.0e-25
WP_002297365.1|2584301_2584676_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	66.1	2.4e-34
WP_002311649.1|2584676_2585021_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002321809.1|2585103_2586444_+	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	65.4	2.4e-164
WP_002297358.1|2586521_2587196_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_002321810.1|2587428_2587863_+	DNA (cytosine-5-)-methyltransferase	NA	A0A1S5SDW2	Streptococcus_phage	77.1	6.5e-63
WP_002297356.1|2587863_2588571_+	DNA methylase	NA	A0A1S5SEK0	Streptococcus_phage	50.4	5.8e-53
WP_002297354.1|2588560_2588851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002297353.1|2589109_2590294_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	61.6	2.9e-142
WP_002317225.1|2590290_2590428_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_002286940.1|2591173_2593084_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.8	7.1e-37
WP_033658092.1|2593187_2593412_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	83.8	1.2e-23
WP_002297350.1|2593424_2593928_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	59.9	9.2e-53
WP_002297349.1|2593987_2594377_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	68.3	3.9e-43
WP_002297348.1|2594363_2596811_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.0	0.0e+00
WP_002297347.1|2596815_2598939_+	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	59.7	1.2e-181
WP_002297346.1|2598935_2599940_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	63.5	5.6e-118
WP_002297345.1|2599958_2600870_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	44.0	2.2e-65
>prophage 13
NZ_CP040740	Enterococcus faecium strain VRE1 chromosome, complete genome	2718395	2604468	2635329	2718395	integrase,transposase	Staphylococcus_phage(33.33%)	29	2616530:2616544	2638629:2638643
WP_002324322.1|2604468_2605647_-|transposase	IS256-like element ISEfm2 family transposase	transposase	NA	NA	NA	NA
WP_002297340.1|2605866_2606499_-	hypothetical protein	NA	A0A0C5K996	Enterococcus_phage	34.3	7.8e-09
WP_002297338.1|2606847_2608299_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A075BS18	Microcystis_phage	46.1	1.9e-18
WP_002297337.1|2608410_2609754_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_096948716.1|2609887_2615815_-	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_002332818.1|2616431_2616866_-	hypothetical protein	NA	NA	NA	NA	NA
2616530:2616544	attL	TTTCAATTAACTGAT	NA	NA	NA	NA
WP_002297334.1|2616882_2618088_-	YSIRK-targeted surface antigen transcriptional regulator	NA	NA	NA	NA	NA
WP_002297333.1|2618781_2619168_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_002304825.1|2619261_2619453_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002311665.1|2619966_2620299_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002297332.1|2620208_2620403_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_138816292.1|2620441_2620588_+|transposase	transposase family protein	transposase	NA	NA	NA	NA
WP_077828743.1|2620594_2620750_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_002304821.1|2622401_2622644_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002297326.1|2622606_2624223_-	cobalamin biosynthesis protein	NA	NA	NA	NA	NA
WP_002317220.1|2624340_2624559_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_106913778.1|2624690_2625215_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.1	8.8e-14
WP_002304820.1|2625407_2625647_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002297324.1|2625670_2627194_-	zinc ABC transporter substrate-binding protein AdcA	NA	NA	NA	NA	NA
WP_002322279.1|2627211_2627334_-	putative metal homeostasis protein	NA	NA	NA	NA	NA
WP_002304819.1|2627363_2628347_-	GTP-binding protein	NA	NA	NA	NA	NA
WP_002297320.1|2628370_2628520_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_002297319.1|2628540_2628918_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002297318.1|2628949_2629129_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_002297316.1|2629143_2629413_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_010729277.1|2629935_2631678_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.1	3.4e-30
WP_002302406.1|2631661_2633416_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.8	1.3e-24
WP_138821048.1|2633525_2634095_-	MptD family putative ECF transporter S component	NA	NA	NA	NA	NA
WP_002323245.1|2634156_2635329_+|transposase	IS256-like element IS1542 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.3e-121
2638629:2638643	attR	ATCAGTTAATTGAAA	NA	NA	NA	NA
>prophage 1
NZ_CP040741	Enterococcus faecium strain VRE1 plasmid pVRE1-1, complete sequence	238664	3393	184221	238664	protease,transposase,integrase	Streptococcus_phage(25.49%)	171	163791:163806	190628:190643
WP_002297404.1|3393_4644_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002295673.1|5053_5293_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002295672.1|5359_5569_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002336710.1|5628_6300_+	class A sortase	NA	NA	NA	NA	NA
WP_002287525.1|7757_8906_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
WP_002287522.1|8922_9327_-|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_010729785.1|10232_10988_+	class C sortase	NA	NA	NA	NA	NA
WP_138821063.1|11708_12881_+|transposase	IS256-like element IS1542 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.7e-121
WP_002343441.1|13150_13399_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025481135.1|13429_15541_+	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA	NA
WP_002350400.1|15578_17636_-|protease	serine protease	protease	NA	NA	NA	NA
WP_002296354.1|17749_17962_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296355.1|18148_18616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002321279.1|18612_18855_+	DUF5415 family protein	NA	NA	NA	NA	NA
WP_002296358.1|18872_19175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010729787.1|19246_21301_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010729788.1|21300_23913_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_002321282.1|23909_26441_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002326876.1|26492_26825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002313112.1|26825_27419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016922504.1|27581_29276_+	ATPase	NA	NA	NA	NA	NA
WP_002305175.1|29543_29777_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305177.1|29963_31841_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	26.3	9.1e-29
WP_002296365.1|32348_33554_+	peptidoglycan DD-metalloendopeptidase family protein	NA	Q6SEC2	Lactobacillus_prophage	42.4	2.5e-32
WP_002296371.1|33569_34214_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010729790.1|34224_35031_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002313120.1|35052_35283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002325546.1|35828_36104_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002330592.1|36145_36568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002330591.1|36586_38179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002330590.1|38190_38526_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002330589.1|38672_38867_+	hypothetical protein	NA	NA	NA	NA	NA
WP_059355962.1|38898_41271_+	hypothetical protein	NA	B5SP25	Lactococcus_phage	30.2	3.0e-13
WP_010729792.1|41331_42792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025481136.1|42802_45007_+	type IA DNA topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	51.1	2.1e-117
WP_002330563.1|45245_45839_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002322787.1|45854_46754_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_002296241.1|46756_47242_+	single-stranded DNA-binding protein	NA	W6LM61	Streptococcus_phage	59.9	3.4e-44
WP_002296240.1|47607_47868_+	hypothetical protein	NA	A0A0S2MYI8	Enterococcus_phage	51.4	3.4e-11
WP_002369675.1|47845_48040_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296239.1|48308_48515_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296238.1|48514_48766_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296237.1|48780_49218_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002353391.1|49210_49918_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002330566.1|50082_50283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305761.1|50298_50478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002323245.1|50785_51958_-|transposase	IS256-like element IS1542 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.3e-121
WP_002287514.1|52150_52414_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002321032.1|52407_52758_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
WP_002323245.1|53785_54958_+|transposase	IS256-like element IS1542 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.3e-121
WP_002303116.1|55031_55454_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002299573.1|55463_55667_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002299575.1|55877_56462_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	5.9e-43
WP_086322086.1|56523_57210_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	98.7	2.9e-126
WP_002304891.1|58091_58487_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001224538.1|58811_59429_+	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	33.1	5.1e-13
WP_000366408.1|59469_59769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000824191.1|59802_59970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010729776.1|60014_60485_-	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	33.6	1.5e-09
WP_002319817.1|60490_61171_-|transposase	IS6-like element ISS1N family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	84.1	2.5e-109
WP_002324322.1|62056_63235_+|transposase	IS256-like element ISEfm2 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	24.9	2.6e-29
WP_002323245.1|63518_64691_-|transposase	IS256-like element IS1542 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.3e-121
WP_002354485.1|65587_66274_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_010706480.1|67864_68215_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010729386.1|68370_68820_+	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_087121905.1|68849_70012_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.2	4.1e-80
WP_002301194.1|70261_71539_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002298083.1|71548_72205_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.1	1.3e-22
WP_002301195.1|72204_73581_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_137217474.1|73866_75489_-|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	48.0	1.7e-124
WP_002302275.1|76140_77112_+	radical SAM protein	NA	NA	NA	NA	NA
WP_077828693.1|77010_77178_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002322470.1|77189_77426_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_077828694.1|77394_77526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002330694.1|77601_77985_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002302270.1|78017_78803_-	histidinol phosphate phosphatase	NA	NA	NA	NA	NA
WP_002302268.1|78980_80081_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_002302267.1|80070_80895_+	type I phosphodiesterase/nucleotide pyrophosphatase	NA	NA	NA	NA	NA
WP_002302265.1|80900_81707_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_002313180.1|81703_82534_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002302261.1|82540_83572_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.6	1.8e-26
WP_002302256.1|85228_85438_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002348630.1|85487_86204_+	aminotransferase class V-fold PLP-dependent enzyme	NA	Q2XUY6	environmental_halophage	50.0	4.5e-45
WP_002349129.1|86711_86852_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002285815.1|86913_87567_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.2	4.0e-24
WP_138821065.1|87563_88931_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_002296840.1|89037_90225_-|transposase	IS256-like element IS16 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.3	8.2e-92
WP_001015311.1|90458_91139_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	1.5e-127
WP_102994044.1|91214_92024_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_002313079.1|92020_92869_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002322556.1|92882_94355_+	glycoside hydrolase family 32 protein	NA	NA	NA	NA	NA
WP_010729757.1|94371_95244_+	ROK family protein	NA	NA	NA	NA	NA
WP_002292678.1|98507_98837_+	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
WP_002300557.1|98826_99114_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_002354485.1|100013_100700_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_044383147.1|101011_102607_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	51.1	1.8e-126
WP_016922464.1|102596_103814_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	33.7	9.2e-14
WP_044383143.1|103827_106977_+	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	23.1	1.1e-21
WP_002354485.1|107188_107875_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_002344897.1|108003_108360_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_002344896.1|108349_108616_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_138821067.1|108774_109728_+	DUF4062 domain-containing protein	NA	NA	NA	NA	NA
WP_002301399.1|109691_110651_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.5	5.0e-31
WP_008271463.1|112064_112310_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002311006.1|112407_112629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138821069.1|113692_114328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002324322.1|114352_115531_-|transposase	IS256-like element ISEfm2 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	24.9	2.6e-29
WP_002300314.1|116662_117832_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_002290383.1|118304_118859_+|integrase	tyrosine-type recombinase/integrase	integrase	W8CYP1	Bacillus_phage	46.1	8.6e-36
WP_002297218.1|119224_120520_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	29.1	1.0e-42
WP_138821071.1|120646_121027_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A097PAS9	Streptococcus_pyogenes_phage	44.2	1.8e-13
WP_002342357.1|121038_121575_+	glyoxalase	NA	NA	NA	NA	NA
WP_002290380.1|121614_121986_+	glyoxalase	NA	NA	NA	NA	NA
WP_002290379.1|122269_123541_+	substrate-binding domain-containing protein	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	45.0	4.1e-17
WP_002338088.1|123785_124811_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_002350067.1|125104_126214_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002287522.1|127304_127709_+|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_002287525.1|127725_128874_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
WP_002350071.1|129099_129924_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002329911.1|129955_131266_+	alpha-glucosidase/alpha-galactosidase	NA	NA	NA	NA	NA
WP_002290371.1|131413_132673_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_002290370.1|132682_133555_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_002290368.1|133566_134397_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002290367.1|134436_136620_+	alpha-galactosidase	NA	NA	NA	NA	NA
WP_002342361.1|136680_137901_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002335326.1|137897_139358_+	sucrose phosphorylase	NA	NA	NA	NA	NA
WP_002290357.1|140862_141072_+	DUF3173 domain-containing protein	NA	NA	NA	NA	NA
WP_002303350.1|141177_142137_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	34.2	1.2e-32
WP_138821073.1|142133_142280_+|integrase	integrase	integrase	NA	NA	NA	NA
WP_002290352.1|143382_144468_-	tyrosine recombinase XerS	NA	NA	NA	NA	NA
WP_002290351.1|144801_145035_+	addiction module antitoxin	NA	NA	NA	NA	NA
WP_002329899.1|145031_145439_+	type II toxin-antitoxin system death-on-curing family toxin	NA	A0A0N9SKD8	Staphylococcus_phage	38.9	4.0e-14
WP_002313170.1|146029_146233_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287870.1|146575_147094_-	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA	NA
WP_002305874.1|147460_147709_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002322543.1|147754_147946_+	fructokinase	NA	NA	NA	NA	NA
WP_086956687.1|148211_149373_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
WP_002300328.1|149871_150348_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002289252.1|150360_151863_-	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_002289253.1|151876_152566_-	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
WP_002289254.1|152726_153545_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002289255.1|153774_154005_+	resolvase	NA	NA	NA	NA	NA
WP_002325009.1|154336_154570_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002301718.1|154590_155046_-|transposase	IS200/IS605 family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.6	1.3e-13
WP_086953894.1|155288_156714_+|transposase	IS3-like element ISEfa10 family transposase	transposase	A0A1B1P773	Bacillus_phage	40.2	2.3e-48
WP_002302077.1|156884_157847_-	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	25.8	2.3e-20
WP_002302078.1|157848_159288_-	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.1	1.4e-16
WP_002303302.1|159472_161419_+	PTS beta-glucoside transporter subunit IIBCA	NA	NA	NA	NA	NA
WP_002292418.1|161682_162555_+	ROK family protein	NA	NA	NA	NA	NA
WP_002287760.1|162850_163804_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.1	1.3e-34
163791:163806	attL	TTTGTCTCGCTTAATT	NA	NA	NA	NA
WP_002372656.1|163932_164394_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033623896.1|164452_164839_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_123038704.1|164914_165106_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_123038703.1|165150_165840_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_002372647.1|165925_166372_-	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_002372645.1|166925_168314_-	glycoside hydrolase family 1 protein	NA	NA	NA	NA	NA
WP_002372643.1|168320_169298_-	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA	NA
WP_002372641.1|169297_170182_-	ROK family protein	NA	NA	NA	NA	NA
WP_003128923.1|170312_171026_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002372637.1|171113_173336_-	alpha-galactosidase	NA	NA	NA	NA	NA
WP_002320611.1|173328_173934_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002320610.1|173959_174784_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_025186882.1|174787_175669_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_123038702.1|175924_177235_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002372634.1|177357_178299_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086956687.1|178708_179871_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
WP_042620411.1|180057_180318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_079997653.1|180351_180843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002324522.1|181298_182207_-|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_071870188.1|182753_182921_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010729769.1|182994_184221_+|integrase	site-specific integrase	integrase	A0A097BYJ7	Leuconostoc_phage	24.2	3.2e-14
190628:190643	attR	AATTAAGCGAGACAAA	NA	NA	NA	NA
>prophage 1
NZ_CP040742	Enterococcus faecium strain VRE1 plasmid pVRE1-VanA, complete sequence	132733	9507	42611	132733	protease,transposase	Enterococcus_phage(28.57%)	34	NA	NA
WP_002287525.1|9507_10656_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
WP_002287522.1|10672_11077_-|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_002320777.1|11627_12431_+	replication initiation protein	NA	NA	NA	NA	NA
WP_002320776.1|13014_13470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002321771.1|13588_14647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002320773.1|14688_16638_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A2I7REQ1	Vibrio_phage	24.7	2.3e-30
WP_002320772.1|16640_20282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002320771.1|20680_21019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002320770.1|21128_21371_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002320769.1|21370_23533_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002320768.1|23544_23778_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_002320767.1|23767_24634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002320766.1|24648_26619_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002320765.1|26784_27012_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002320764.1|27008_27503_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002320763.1|27676_28012_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000195429.1|28187_29360_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_002360084.1|29629_31213_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002321028.1|31334_31919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002321027.1|31929_32175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010733700.1|32180_32903_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002321025.1|33033_33777_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002321024.1|33782_34148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002321023.1|34163_34694_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002321022.1|34822_35083_+	hypothetical protein	NA	A0A059T7S7	Listeria_phage	45.3	5.3e-12
WP_138821078.1|35319_37560_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002350503.1|37697_38495_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002350502.1|38534_38717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002321018.1|38760_39048_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002321017.1|39084_39372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002350501.1|39462_39702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002350500.1|39829_40159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013330746.1|40568_41255_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	5.9e-127
WP_002287525.1|41462_42611_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
>prophage 2
NZ_CP040742	Enterococcus faecium strain VRE1 plasmid pVRE1-VanA, complete sequence	132733	63525	117020	132733	protease,tRNA,transposase	Streptococcus_phage(50.0%)	67	NA	NA
WP_016922336.1|63525_64125_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_002350576.1|64140_64617_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016922335.1|64633_65536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138821081.1|65608_65803_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287522.1|65981_66386_+|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_002287525.1|66402_67551_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
WP_042957131.1|67798_68227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002350572.1|68461_69049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002350571.1|69048_69948_+	RusA family crossover junction endodeoxyribonuclease	NA	NA	NA	NA	NA
WP_016922248.1|69947_70862_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016922247.1|70913_71129_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002350568.1|71318_71573_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002350567.1|71751_72801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002320840.1|72977_73208_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002350566.1|73210_73468_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010730973.1|73684_74560_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010730972.1|74569_75364_+	hypothetical protein	NA	F0PIJ0	Enterococcus_phage	33.7	1.1e-23
WP_010730971.1|75392_76511_+	hypothetical protein	NA	F0PIJ1	Enterococcus_phage	48.8	5.3e-85
WP_002321530.1|76543_76864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002347494.1|77118_77808_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002350561.1|77808_78012_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002354485.1|78735_79422_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_106913803.1|79819_79915_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000353844.1|80614_80899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001232859.1|80901_81318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002311815.1|81454_82174_-	replication initiation protein	NA	NA	NA	NA	NA
WP_002354485.1|82559_83246_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_001280781.1|83595_84291_+	VanA-type vancomycin resistance DNA-binding response regulator VanR	NA	W8CYM9	Bacillus_phage	37.7	4.9e-36
WP_002305818.1|84268_85423_+	VanA-type vancomycin resistance histidine kinase VanS	NA	W8CYF6	Bacillus_phage	23.3	1.5e-13
WP_001059542.1|85637_86606_+	D-lactate dehydrogenase VanH-A	NA	M1HUW8	Acanthocystis_turfacea_Chlorella_virus	33.1	3.5e-40
WP_001079845.1|86598_87630_+	D-alanine--(R)-lactate ligase VanA	NA	NA	NA	NA	NA
WP_000402347.1|87635_88244_+	D-Ala-D-Ala dipeptidase VanX-A	NA	NA	NA	NA	NA
WP_002354485.1|88419_89106_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_001812592.1|89394_90306_+	D-Ala-D-Ala carboxypeptidase VanY-A	NA	NA	NA	NA	NA
WP_000516404.1|90458_90944_+	glycopeptide resistance protein VanZ-A	NA	NA	NA	NA	NA
WP_000754864.1|91230_91560_-	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	44.6	2.6e-16
WP_000629052.1|91864_92194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000312841.1|92183_92471_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000017403.1|92749_93313_-	recombinase family protein	NA	A0A219Y9V9	Aeromonas_phage	46.4	2.3e-36
WP_002293724.1|93505_94078_-	HAD-IIIA family hydrolase	NA	NA	NA	NA	NA
WP_002354485.1|94592_95279_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_080441113.1|95392_95578_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
WP_138821094.1|95584_96094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001015311.1|96601_97282_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	1.5e-127
WP_000599739.1|97451_98057_+	cell filamentation protein	NA	NA	NA	NA	NA
WP_002303206.1|98072_98645_+	recombinase family protein	NA	A0A1J1J8Z4	Escherichia_phage	46.0	6.8e-36
WP_002360715.1|98981_99221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138821102.1|99117_99690_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	56.5	8.6e-55
WP_086953888.1|99790_100953_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
WP_077828739.1|100993_101377_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	45.5	1.6e-12
WP_000199136.1|101358_101613_-|transposase	transposase	transposase	A0A1P8CWP5	Bacillus_phage	47.6	2.1e-13
WP_001196543.1|101805_102081_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429439.1|102052_103006_-	ParA family protein	NA	F0PIG8	Enterococcus_phage	26.1	7.7e-16
WP_000947691.1|103617_105111_+	replication protein RepR	NA	NA	NA	NA	NA
WP_138821096.1|105245_105542_+	type III secretion system protein PrgN	NA	NA	NA	NA	NA
WP_002287225.1|105565_106525_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.1	3.4e-32
WP_002354485.1|107376_108063_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_099097609.1|108338_108644_+	site-specific recombinase	NA	A0A2K5B2B4	Erysipelothrix_phage	47.5	2.5e-13
WP_002303393.1|108786_109011_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002303392.1|109025_109895_+	hypothetical protein	NA	A0A1X9I6C9	Streptococcus_phage	90.3	5.7e-151
WP_000662263.1|109875_110610_+	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
WP_001255866.1|110642_111551_+	aminoglycoside nucleotidyltransferase ANT(6)-Ia	NA	E4ZFP8	Streptococcus_phage	100.0	2.8e-177
WP_002347175.1|111547_111796_+	hypothetical protein	NA	A0A1B0RXL7	Streptococcus_phage	96.1	9.5e-27
WP_002324522.1|111798_112707_-|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_002297218.1|112807_114103_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	29.1	1.0e-42
WP_001096887.1|114691_115486_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_002354485.1|116333_117020_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
