assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_005979285.1_ASM597928v1	NZ_CP030042	Enterococcus faecalis strain C25 chromosome, complete genome	1	192653-192726	1	CRISPRCasFinder	no		DEDDh,csa3,DinG,cas3,cas14j,WYL	Orphan	GTTTTTCTGTTGCTCACCAACTAT	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,cas3,cas14j,WYL,RT	NA,NA|85aa|down_9|NZ_CP030042.1_203939_204194_+	NA|519aa|up_9|NZ_CP030042.1_181368_182925_+	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|266aa|up_8|NZ_CP030042.1_183084_183882_+	pfam13277, YmdB, YmdB-like protein	NA|129aa|up_7|NZ_CP030042.1_183955_184342_+	COG4550, COG4550, Predicted membrane protein [Function unknown]	NA|859aa|up_6|NZ_CP030042.1_184342_186919_+	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|711aa|up_5|NZ_CP030042.1_186950_189083_+	COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]	NA|185aa|up_4|NZ_CP030042.1_189107_189662_+	cd00555, Maf, Nucleotide binding protein Maf	NA|146aa|up_3|NZ_CP030042.1_189794_190232_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|324aa|up_2|NZ_CP030042.1_190406_191378_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|48aa|up_1|NZ_CP030042.1_191609_191753_+	pfam16935, Hol_Tox, Putative Holin-like Toxin (Hol-Tox)	NA|198aa|up_0|NZ_CP030042.1_191992_192586_-	pfam18813, PBECR4, phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4	NA|217aa|down_0|NZ_CP030042.1_193047_193698_-	TIGR01990, bPGM, beta-phosphoglucomutase	NA|915aa|down_1|NZ_CP030042.1_193712_196457_-	COG1554, ATH1, Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]	NA|238aa|down_2|NZ_CP030042.1_196717_197431_+	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|233aa|down_3|NZ_CP030042.1_197830_198529_+	pfam13731, WxL, WxL domain surface cell wall-binding	NA|239aa|down_4|NZ_CP030042.1_198623_199340_+	pfam13731, WxL, WxL domain surface cell wall-binding	NA|150aa|down_5|NZ_CP030042.1_199380_199830_-	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL	NA|423aa|down_6|NZ_CP030042.1_200038_201307_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|435aa|down_7|NZ_CP030042.1_201299_202604_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|289aa|down_8|NZ_CP030042.1_202771_203638_+	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]	NA|85aa|down_9|NZ_CP030042.1_203939_204194_+	NA
GCF_005979285.1_ASM597928v1	NZ_CP030042	Enterococcus faecalis strain C25 chromosome, complete genome	2	810847-810974	2	CRISPRCasFinder	no	csa3	DEDDh,csa3,DinG,cas3,cas14j,WYL	Type I-A	TGTTAAAACAAACTGCTTAGCCAAAAACATGGAGTAGATGTGGAAC	46	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,cas3,cas14j,WYL,RT	NA,NA	NA|286aa|up_9|NZ_CP030042.1_802241_803099_-	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase	NA|147aa|up_8|NZ_CP030042.1_803197_803638_+	cd07153, Fur_like, Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators	NA|59aa|up_7|NZ_CP030042.1_803803_803980_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|150aa|up_6|NZ_CP030042.1_804005_804455_+	pfam09424, YqeY, Yqey-like protein	NA|325aa|up_5|NZ_CP030042.1_804637_805612_+	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]	NA|733aa|up_4|NZ_CP030042.1_805640_807839_+	COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only]	NA|160aa|up_3|NZ_CP030042.1_807838_808318_+	PRK00016, PRK00016, metal-binding heat shock protein; Provisional	NA|136aa|up_2|NZ_CP030042.1_808295_808703_+	cd14265, UDPK_IM_like, Integral membrane undecaprenol kinase and similar enzymes	NA|301aa|up_1|NZ_CP030042.1_808716_809619_+	PRK00089, era, GTPase Era; Reviewed	NA|263aa|up_0|NZ_CP030042.1_809701_810490_+	TIGR00613, DNA_repair_protein_RecO, DNA repair protein RecO	NA|303aa|down_0|NZ_CP030042.1_811097_812006_+	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated	NA|695aa|down_1|NZ_CP030042.1_812007_814092_+	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated	NA|64aa|down_2|NZ_CP030042.1_814131_814323_+	PRK07758, PRK07758, hypothetical protein; Provisional	NA|311aa|down_3|NZ_CP030042.1_814356_815289_-	PRK02463, PRK02463, OxaA-like protein precursor; Provisional	NA|92aa|down_4|NZ_CP030042.1_815455_815731_-	COG1254, AcyP, Acylphosphatases [Energy production and conversion]	NA|259aa|down_5|NZ_CP030042.1_815837_816614_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|146aa|down_6|NZ_CP030042.1_816633_817071_+	PRK10562, PRK10562, putative acetyltransferase; Provisional	NA|262aa|down_7|NZ_CP030042.1_817254_818040_+	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|294aa|down_8|NZ_CP030042.1_818145_819027_+	PRK09377, tsf, elongation factor Ts; Provisional	NA|241aa|down_9|NZ_CP030042.1_819287_820010_+	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)
GCF_005979285.1_ASM597928v1	NZ_CP030042	Enterococcus faecalis strain C25 chromosome, complete genome	3	1046439-1046738	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,csa3,DinG,cas3,cas14j,WYL	Orphan	GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC,GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC,GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	36,36,36	1	1	1046607-1046636	NZ_CP030044.1_67196-67167	II-A,II-B:II-A,II-B:II-A,II-B	3,4,3	4	Orphan	DEDDh,csa3,DinG,cas3,cas14j,WYL,RT	NA,NA	NA|325aa|up_9|NZ_CP030042.1_1035966_1036941_+	PRK02458, PRK02458, ribose-phosphate pyrophosphokinase; Provisional	NA|382aa|up_8|NZ_CP030042.1_1037097_1038243_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|115aa|up_7|NZ_CP030042.1_1038310_1038655_+	pfam08866, DUF1831, Putative amino acid metabolism	NA|375aa|up_6|NZ_CP030042.1_1038880_1040005_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|413aa|up_5|NZ_CP030042.1_1040184_1041423_-	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|172aa|up_4|NZ_CP030042.1_1041439_1041955_-	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|190aa|up_3|NZ_CP030042.1_1042087_1042657_+	pfam13305, WHG, WHG domain	NA|122aa|up_2|NZ_CP030042.1_1042754_1043120_+	pfam06279, DUF1033, Protein of unknown function (DUF1033)	NA|694aa|up_1|NZ_CP030042.1_1043250_1045332_+	PRK07726, PRK07726, DNA topoisomerase 3	NA|288aa|up_0|NZ_CP030042.1_1045416_1046280_+	smart00871, AraC_E_bind, Bacterial transcription activator, effector binding domain	NA|473aa|down_0|NZ_CP030042.1_1047144_1048563_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|338aa|down_1|NZ_CP030042.1_1048559_1049573_+	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|578aa|down_2|NZ_CP030042.1_1049577_1051311_+	TIGR02857, transport_ATP-binding_protein, thiol reductant ABC exporter, CydD subunit	NA|589aa|down_3|NZ_CP030042.1_1051307_1053074_+	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|327aa|down_4|NZ_CP030042.1_1053153_1054134_-	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|302aa|down_5|NZ_CP030042.1_1054255_1055161_+	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated	NA|404aa|down_6|NZ_CP030042.1_1055189_1056401_+	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|808aa|down_7|NZ_CP030042.1_1056714_1059138_+	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|234aa|down_8|NZ_CP030042.1_1059267_1059969_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|250aa|down_9|NZ_CP030042.1_1060086_1060836_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
GCF_005979285.1_ASM597928v1	NZ_CP030043	Enterococcus faecalis strain C25 plasmid pC25-1, complete sequence	1	750-881	1,1	CRISPRCasFinder,PILER-CR	no			Orphan	TTTCGAAAGTGGGAAAAACCAAC,TTCGTTCGAAAGTGGGAAAAACCAACC	23,27	0	0	NA	NA	NA:NA	2,2	2	Orphan	DEDDh,csa3,DinG,cas3,cas14j,WYL,RT	NA,NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|227aa|down_0|NZ_CP030043.1_1735_2416_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|55aa|down_1|NZ_CP030043.1_2454_2619_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|66aa|down_2|NZ_CP030043.1_2784_2982_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|205aa|down_3|NZ_CP030043.1_2971_3586_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|306aa|down_4|NZ_CP030043.1_3768_4686_+	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter	NA|250aa|down_5|NZ_CP030043.1_4678_5428_+	pfam12730, ABC2_membrane_4, ABC-2 family transporter protein	NA|277aa|down_6|NZ_CP030043.1_5427_6258_+	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|227aa|down_7|NZ_CP030043.1_6454_7135_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|131aa|down_8|NZ_CP030043.1_7592_7985_+	COG5015, COG5015, Uncharacterized conserved protein [Function unknown]	NA|227aa|down_9|NZ_CP030043.1_8172_8853_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
