assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_005954705.1_ASM595470v1	NZ_CP040668	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain SA20082869 chromosome, complete genome	1	2919056-2919165	1	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	TTAAAAAAAGGTGGTACAGGGTGGGACA	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT,cas14j	NA|198aa|up_4|NZ_CP040668.1_2912928_2913522_+,NA|276aa|up_2|NZ_CP040668.1_2915439_2916267_-,NA|61aa|down_0|NZ_CP040668.1_2921914_2922097_+,NA|111aa|down_6|NZ_CP040668.1_2932119_2932452_-,NA|66aa|down_9|NZ_CP040668.1_2935225_2935423_+	NA|470aa|up_9|NZ_CP040668.1_2906278_2907688_+	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|727aa|up_8|NZ_CP040668.1_2907684_2909865_+	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|388aa|up_7|NZ_CP040668.1_2909872_2911036_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|355aa|up_6|NZ_CP040668.1_2911636_2912701_+	PRK09692, PRK09692, integrase; Provisional	NA|56aa|up_5|NZ_CP040668.1_2912714_2912882_+	PRK09692, PRK09692, integrase; Provisional	NA|198aa|up_4|NZ_CP040668.1_2912928_2913522_+	NA	NA|398aa|up_3|NZ_CP040668.1_2913911_2915105_+	pfam02810, SEC-C, SEC-C motif	NA|276aa|up_2|NZ_CP040668.1_2915439_2916267_-	NA	NA|72aa|up_1|NZ_CP040668.1_2916717_2916933_+	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|690aa|up_0|NZ_CP040668.1_2916968_2919038_+	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|61aa|down_0|NZ_CP040668.1_2921914_2922097_+	NA	NA|372aa|down_1|NZ_CP040668.1_2922201_2923317_+	COG1819, COG1819, Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]	NA|1218aa|down_2|NZ_CP040668.1_2923397_2927051_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|415aa|down_3|NZ_CP040668.1_2927160_2928405_+	COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]	NA|312aa|down_4|NZ_CP040668.1_2928436_2929372_+	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|727aa|down_5|NZ_CP040668.1_2929413_2931594_-	PRK13528, PRK13528, outer membrane receptor FepA; Provisional	NA|111aa|down_6|NZ_CP040668.1_2932119_2932452_-	NA	NA|351aa|down_7|NZ_CP040668.1_2932626_2933679_-	PRK15196, PRK15196, type III secretion system effector PipB2	NA|310aa|down_8|NZ_CP040668.1_2934197_2935127_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|66aa|down_9|NZ_CP040668.1_2935225_2935423_+	NA
GCF_005954705.1_ASM595470v1	NZ_CP040668	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain SA20082869 chromosome, complete genome	2	3082439-3083077	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACA	29,29,28	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT,cas14j	NA,NA	NA|254aa|up_9|NZ_CP040668.1_3074305_3075067_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP040668.1_3075047_3076097_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP040668.1_3076093_3076573_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP040668.1_3076572_3077283_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP040668.1_3077301_3077613_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|119aa|up_4|NZ_CP040668.1_3077803_3078160_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP040668.1_3078177_3078783_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP040668.1_3078769_3080209_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP040668.1_3080218_3081127_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP040668.1_3081377_3082424_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP040668.1_3083173_3083467_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP040668.1_3083466_3084387_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP040668.1_3084383_3085034_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP040668.1_3085015_3085762_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_CP040668.1_3085772_3086831_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|down_5|NZ_CP040668.1_3086844_3087405_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_6|NZ_CP040668.1_3087401_3088958_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_7|NZ_CP040668.1_3088969_3091633_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|NZ_CP040668.1_3092077_3093031_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|NZ_CP040668.1_3093118_3093853_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_005954705.1_ASM595470v1	NZ_CP040668	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain SA20082869 chromosome, complete genome	3	3099209-3100823	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	26,26,25	26	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT,cas14j	NA,NA	cas7|353aa|up_9|NZ_CP040668.1_3085772_3086831_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|up_8|NZ_CP040668.1_3086844_3087405_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|up_7|NZ_CP040668.1_3087401_3088958_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|up_6|NZ_CP040668.1_3088969_3091633_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_5|NZ_CP040668.1_3092077_3093031_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_CP040668.1_3093118_3093853_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP040668.1_3093928_3095641_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP040668.1_3095640_3097440_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP040668.1_3097863_3098226_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP040668.1_3098313_3099111_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP040668.1_3101119_3101791_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP040668.1_3101926_3103225_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP040668.1_3103307_3104945_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP040668.1_3105172_3105973_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|99aa|down_4|NZ_CP040668.1_3106740_3107037_-	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|119aa|down_5|NZ_CP040668.1_3107002_3107359_-	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|745aa|down_6|NZ_CP040668.1_3107442_3109677_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|432aa|down_7|NZ_CP040668.1_3109728_3111024_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_8|NZ_CP040668.1_3111081_3113838_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|381aa|down_9|NZ_CP040668.1_3113881_3115024_-	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]
