assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_005931015.1_ASM593101v1	NZ_CP040229	Staphylococcus aureus strain GD487 chromosome, complete genome	1	260352-260432	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Orphan	TTACAATAATGTGCAAGTTGGCGG	24	1	12	260376-260408|260376-260408|260376-260408|260376-260408|260376-260408|260376-260408|260376-260408|260376-260408|260376-260408|260376-260408|260376-260408|260376-260408	NZ_CP040229.1_776356-776324|NZ_CP040229.1_870508-870540|NZ_CP040229.1_1332194-1332226|NZ_CP040229.1_1952578-1952546|NZ_CP040229.1_2277274-2277242|NZ_CP040229.1_2322392-2322424|NZ_CP040229.1_242237-242205|NZ_CP040229.1_335862-335894|NZ_CP040229.1_1010434-1010402|NZ_CP040229.1_1600925-1600893|NZ_CP040229.1_2097659-2097691|NZ_CP040229.1_2455367-2455335	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA,NA|131aa|down_4|NZ_CP040229.1_265569_265962_+	NA|574aa|up_9|NZ_CP040229.1_247641_249363_+	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|225aa|up_8|NZ_CP040229.1_249506_250181_+	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|580aa|up_7|NZ_CP040229.1_250442_252182_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|247aa|up_6|NZ_CP040229.1_252184_252925_+	PRK14084, PRK14084, DNA-binding response regulator	NA|148aa|up_5|NZ_CP040229.1_253037_253481_+	PRK04125, PRK04125, antiholin-like protein LrgA	NA|234aa|up_4|NZ_CP040229.1_253473_254175_+	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|764aa|up_3|NZ_CP040229.1_254515_256807_+	COG3256, NorB, Nitric oxide reductase large subunit [Inorganic ion transport and metabolism]	NA|235aa|up_2|NZ_CP040229.1_257032_257737_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|264aa|up_1|NZ_CP040229.1_257885_258677_+	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|479aa|up_0|NZ_CP040229.1_258692_260129_+	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|305aa|down_0|NZ_CP040229.1_261716_262631_-	TIGR02152, Putative_ribokinase, ribokinase	NA|135aa|down_1|NZ_CP040229.1_262658_263063_-	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|294aa|down_2|NZ_CP040229.1_263077_263959_-	pfam06800, Sugar_transport, Sugar transport protein	NA|333aa|down_3|NZ_CP040229.1_264190_265189_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|131aa|down_4|NZ_CP040229.1_265569_265962_+	NA	NA|459aa|down_5|NZ_CP040229.1_266090_267467_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|331aa|down_6|NZ_CP040229.1_267700_268693_+	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane]	NA|317aa|down_7|NZ_CP040229.1_269018_269969_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|220aa|down_8|NZ_CP040229.1_270020_270680_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|307aa|down_9|NZ_CP040229.1_270693_271614_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein
GCF_005931015.1_ASM593101v1	NZ_CP040229	Staphylococcus aureus strain GD487 chromosome, complete genome	2	614201-614308	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Orphan	AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA	39	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA|64aa|up_8|NZ_CP040229.1_605563_605755_-,NA|169aa|down_4|NZ_CP040229.1_618041_618548_+,NA|239aa|down_5|NZ_CP040229.1_618709_619426_+	NA|313aa|up_9|NZ_CP040229.1_604601_605540_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|64aa|up_8|NZ_CP040229.1_605563_605755_-	NA	NA|179aa|up_7|NZ_CP040229.1_605985_606522_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_6|NZ_CP040229.1_606691_607168_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_5|NZ_CP040229.1_607207_608503_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_4|NZ_CP040229.1_608530_609052_+	pfam08741, YwhD, YwhD family	NA|337aa|up_3|NZ_CP040229.1_609550_610561_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|128aa|up_2|NZ_CP040229.1_610869_611253_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP040229.1_611249_612911_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP040229.1_613395_614031_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|NZ_CP040229.1_614419_615247_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP040229.1_615397_616348_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP040229.1_616402_617122_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP040229.1_617105_617906_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP040229.1_618041_618548_+	NA	NA|239aa|down_5|NZ_CP040229.1_618709_619426_+	NA	NA|263aa|down_6|NZ_CP040229.1_619594_620383_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP040229.1_620634_621009_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP040229.1_621956_622886_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP040229.1_623078_623303_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_005931015.1_ASM593101v1	NZ_CP040229	Staphylococcus aureus strain GD487 chromosome, complete genome	3	776358-776440	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Orphan	CACCCCAACTCGCATTGCTTGTAGAA	26	1	23	776384-776414|776384-776414|776384-776414|776384-776414|776384-776414|776384-776414|776384-776414|776384-776414|776384-776414|776384-776414|776384-776414|776384-776414|776384-776414|776384-776414|776384-776414|776384-776414|776384-776414|776384-776414|776384-776414|776384-776414|776384-776414|776384-776414|776384-776414	NZ_CP040229.1_891242-891272|NZ_CP040229.1_1952489-1952519|NZ_CP040229.1_2011812-2011842|NZ_CP040229.1_870480-870450|NZ_CP040229.1_242265-242295|NZ_CP040229.1_242323-242353|NZ_CP040229.1_821111-821141|NZ_CP040229.1_984208-984238|NZ_CP040229.1_2277302-2277332|NZ_CP040229.1_336007-335977|NZ_CP040229.1_605698-605668|NZ_CP040229.1_730071-730041|NZ_CP040229.1_1084536-1084506|NZ_CP040229.1_1084590-1084560|NZ_CP040229.1_1720663-1720633|NZ_CP040229.1_1811438-1811408|NZ_CP040229.1_2322364-2322334|NZ_CP040229.1_785365-785395|NZ_CP040229.1_1336635-1336665|NZ_CP040229.1_1382723-1382753|NZ_CP040229.1_2288050-2288080|NZ_CP040229.1_2722633-2722663|NZ_CP040229.1_825249-825219	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA|77aa|up_5|NZ_CP040229.1_770641_770872_-,NA	NA|217aa|up_9|NZ_CP040229.1_764620_765271_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_8|NZ_CP040229.1_765267_765504_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_7|NZ_CP040229.1_765772_767758_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_6|NZ_CP040229.1_767765_770612_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|77aa|up_5|NZ_CP040229.1_770641_770872_-	NA	NA|311aa|up_4|NZ_CP040229.1_771221_772154_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP040229.1_772159_772999_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP040229.1_773006_773492_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP040229.1_773499_774939_+	sd00006, TPR, Tetratricopeptide repeat	NA|312aa|up_0|NZ_CP040229.1_775005_775941_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP040229.1_776708_777620_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP040229.1_777616_778612_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP040229.1_778720_779665_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP040229.1_780234_780822_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|545aa|down_4|NZ_CP040229.1_781004_782639_+	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|301aa|down_5|NZ_CP040229.1_782845_783748_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_6|NZ_CP040229.1_784450_785080_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_7|NZ_CP040229.1_785854_786868_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_8|NZ_CP040229.1_786920_787931_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_9|NZ_CP040229.1_788069_789260_+	PRK00073, pgk, phosphoglycerate kinase; Provisional
GCF_005931015.1_ASM593101v1	NZ_CP040229	Staphylococcus aureus strain GD487 chromosome, complete genome	4	825518-825598	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Orphan	TCTTTATCATTTCTGTCCCACTCCC	25	1	1	825543-825573	NZ_CP040229.1_770811-770781	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA|38aa|up_7|NZ_CP040229.1_819760_819874_+,NA|74aa|up_0|NZ_CP040229.1_825091_825313_-,NA|105aa|down_7|NZ_CP040229.1_833204_833519_-	NA|119aa|up_9|NZ_CP040229.1_818801_819158_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_8|NZ_CP040229.1_819315_819696_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_7|NZ_CP040229.1_819760_819874_+	NA	NA|293aa|up_6|NZ_CP040229.1_819875_820754_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|up_5|NZ_CP040229.1_821455_821842_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|up_4|NZ_CP040229.1_821834_822131_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|up_3|NZ_CP040229.1_822380_823406_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|up_2|NZ_CP040229.1_823398_824094_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|up_1|NZ_CP040229.1_824111_824933_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|74aa|up_0|NZ_CP040229.1_825091_825313_-	NA	NA|65aa|down_0|NZ_CP040229.1_825740_825935_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_1|NZ_CP040229.1_826168_827020_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_2|NZ_CP040229.1_827347_828109_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_3|NZ_CP040229.1_828207_829515_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_4|NZ_CP040229.1_829629_830871_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|155aa|down_5|NZ_CP040229.1_830860_831325_+	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|466aa|down_6|NZ_CP040229.1_831475_832873_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|105aa|down_7|NZ_CP040229.1_833204_833519_-	NA	NA|347aa|down_8|NZ_CP040229.1_833887_834928_+	COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]	NA|356aa|down_9|NZ_CP040229.1_834941_836009_+	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
GCF_005931015.1_ASM593101v1	NZ_CP040229	Staphylococcus aureus strain GD487 chromosome, complete genome	5	1720676-1720762	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Orphan	TGCAAGTTGGGGTGGGGCCCCAACATAGA	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA,NA	NA|423aa|up_9|NZ_CP040229.1_1705143_1706412_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|374aa|up_8|NZ_CP040229.1_1706460_1707582_-	PRK14035, PRK14035, citrate synthase; Provisional	NA|454aa|up_7|NZ_CP040229.1_1707929_1709291_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_6|NZ_CP040229.1_1709634_1711392_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_5|NZ_CP040229.1_1711413_1712382_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_4|NZ_CP040229.1_1712650_1713595_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_3|NZ_CP040229.1_1713594_1714452_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_2|NZ_CP040229.1_1714646_1715876_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_1|NZ_CP040229.1_1716324_1719522_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_0|NZ_CP040229.1_1719542_1720484_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|down_0|NZ_CP040229.1_1720853_1722152_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|down_1|NZ_CP040229.1_1722356_1722770_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_2|NZ_CP040229.1_1723275_1723965_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_3|NZ_CP040229.1_1724139_1725195_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|373aa|down_4|NZ_CP040229.1_1725510_1726629_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_5|NZ_CP040229.1_1726769_1727270_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_6|NZ_CP040229.1_1727516_1728719_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_7|NZ_CP040229.1_1728806_1729754_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_8|NZ_CP040229.1_1729876_1730371_-	PRK00522, tpx, thiol peroxidase	NA|257aa|down_9|NZ_CP040229.1_1730468_1731239_-	PRK10621, PRK10621, hypothetical protein; Provisional
GCF_005931015.1_ASM593101v1	NZ_CP040229	Staphylococcus aureus strain GD487 chromosome, complete genome	6	1723096-1723178	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Orphan	GAAGCTGACGAAAAAGTCAGCTTAC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA,NA	NA|454aa|up_9|NZ_CP040229.1_1707929_1709291_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_8|NZ_CP040229.1_1709634_1711392_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_7|NZ_CP040229.1_1711413_1712382_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_6|NZ_CP040229.1_1712650_1713595_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_5|NZ_CP040229.1_1713594_1714452_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_4|NZ_CP040229.1_1714646_1715876_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_3|NZ_CP040229.1_1716324_1719522_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_2|NZ_CP040229.1_1719542_1720484_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|up_1|NZ_CP040229.1_1720853_1722152_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|up_0|NZ_CP040229.1_1722356_1722770_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_0|NZ_CP040229.1_1723275_1723965_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_1|NZ_CP040229.1_1724139_1725195_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|373aa|down_2|NZ_CP040229.1_1725510_1726629_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_3|NZ_CP040229.1_1726769_1727270_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_4|NZ_CP040229.1_1727516_1728719_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_5|NZ_CP040229.1_1728806_1729754_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_6|NZ_CP040229.1_1729876_1730371_-	PRK00522, tpx, thiol peroxidase	NA|257aa|down_7|NZ_CP040229.1_1730468_1731239_-	PRK10621, PRK10621, hypothetical protein; Provisional	NA|408aa|down_8|NZ_CP040229.1_1731282_1732506_-	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|383aa|down_9|NZ_CP040229.1_1732505_1733654_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
GCF_005931015.1_ASM593101v1	NZ_CP040229	Staphylococcus aureus strain GD487 chromosome, complete genome	7	2086545-2086757	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Orphan	TGATGTGCTGTTGTGGAAGCTTGGTGTCGTGCCATGCTACTTTGATG	47	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA|46aa|up_3|NZ_CP040229.1_2083420_2083558_-,NA|107aa|down_0|NZ_CP040229.1_2086790_2087111_+	NA|886aa|up_9|NZ_CP040229.1_2073455_2076113_+	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	NA|232aa|up_8|NZ_CP040229.1_2076112_2076808_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|507aa|up_7|NZ_CP040229.1_2077160_2078681_-	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|452aa|up_6|NZ_CP040229.1_2079196_2080552_-	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]	NA|357aa|up_5|NZ_CP040229.1_2080566_2081637_-	PRK01966, ddl, D-alanine--D-alanine ligase	NA|401aa|up_4|NZ_CP040229.1_2081954_2083157_+	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|46aa|up_3|NZ_CP040229.1_2083420_2083558_-	NA	NA|70aa|up_2|NZ_CP040229.1_2083685_2083895_-	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|98aa|up_1|NZ_CP040229.1_2083906_2084200_-	cd10152, SaCsoR-like_DUF156, Staphylococcus aureus copper-sensitive operon repressor (CsoR), and related domains; this family was previously known as part of DUF156	NA|495aa|up_0|NZ_CP040229.1_2084365_2085850_+	TIGR04265, bac_cardiolipin, cardiolipin synthase	NA|107aa|down_0|NZ_CP040229.1_2086790_2087111_+	NA	NA|291aa|down_1|NZ_CP040229.1_2088752_2089625_-	PRK02463, PRK02463, OxaA-like protein precursor; Provisional	NA|214aa|down_2|NZ_CP040229.1_2089710_2090352_-	PRK00043, thiE, thiamine phosphate synthase	NA|264aa|down_3|NZ_CP040229.1_2090353_2091145_-	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|277aa|down_4|NZ_CP040229.1_2091128_2091959_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|230aa|down_5|NZ_CP040229.1_2091951_2092641_-	TIGR04306, salvage_TenA, thiaminase II	NA|232aa|down_6|NZ_CP040229.1_2093027_2093723_-	pfam06737, Transglycosylas, Transglycosylase-like domain	NA|132aa|down_7|NZ_CP040229.1_2094111_2094507_-	pfam00436, SSB, Single-strand binding protein family	NA|168aa|down_8|NZ_CP040229.1_2094637_2095141_+	pfam14183, YwpF, YwpF-like protein	NA|147aa|down_9|NZ_CP040229.1_2095197_2095638_-	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ
GCF_005931015.1_ASM593101v1	NZ_CP040229	Staphylococcus aureus strain GD487 chromosome, complete genome	8	2143250-2143400	8	CRISPRCasFinder	no	csa3,TnsE_C	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA|77aa|up_5|NZ_CP040229.1_2138122_2138353_-,NA|364aa|up_0|NZ_CP040229.1_2142140_2143232_+,NA|35aa|down_0|NZ_CP040229.1_2143729_2143834_-,NA|61aa|down_1|NZ_CP040229.1_2144266_2144449_-,NA|53aa|down_2|NZ_CP040229.1_2144513_2144672_+,NA|31aa|down_3|NZ_CP040229.1_2145107_2145200_+	NA|237aa|up_9|NZ_CP040229.1_2133732_2134443_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP040229.1_2134563_2135007_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP040229.1_2135206_2135620_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP040229.1_2136077_2137451_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP040229.1_2138122_2138353_-	NA	NA|313aa|up_4|NZ_CP040229.1_2138383_2139322_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP040229.1_2139755_2140421_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP040229.1_2140572_2140893_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP040229.1_2140894_2141875_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP040229.1_2142140_2143232_+	NA	NA|35aa|down_0|NZ_CP040229.1_2143729_2143834_-	NA	NA|61aa|down_1|NZ_CP040229.1_2144266_2144449_-	NA	NA|53aa|down_2|NZ_CP040229.1_2144513_2144672_+	NA	NA|31aa|down_3|NZ_CP040229.1_2145107_2145200_+	NA	NA|286aa|down_4|NZ_CP040229.1_2145329_2146187_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_5|NZ_CP040229.1_2146254_2147037_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|203aa|down_6|NZ_CP040229.1_2147326_2147935_-	pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863)	NA|345aa|down_7|NZ_CP040229.1_2147962_2148997_-	pfam13676, TIR_2, TIR domain	NA|97aa|down_8|NZ_CP040229.1_2150617_2150908_-	pfam11867, DUF3387, Domain of unknown function (DUF3387)	TnsE_C|135aa|down_9|NZ_CP040229.1_2151032_2151437_-	pfam18623, TnsE_C, TnsE C-terminal domain
GCF_005931015.1_ASM593101v1	NZ_CP040229	Staphylococcus aureus strain GD487 chromosome, complete genome	9	2322416-2322501	9	CRISPRCasFinder	no	WYL	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Unclear	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	7	2322446-2322471|2322446-2322471|2322446-2322471|2322446-2322471|2322446-2322471|2322446-2322471|2322446-2322471	NZ_CP040229.1_1600927-1600902|NZ_CP040229.1_821200-821175|NZ_CP040229.1_825320-825345|NZ_CP040229.1_870255-870280|NZ_CP040229.1_1332306-1332331|NZ_CP040229.1_2097657-2097682|NZ_CP040229.1_2455369-2455344	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA|65aa|up_7|NZ_CP040229.1_2315166_2315361_-,NA|80aa|up_0|NZ_CP040229.1_2322117_2322357_-,NA|78aa|down_1|NZ_CP040229.1_2323451_2323685_-,NA|110aa|down_8|NZ_CP040229.1_2331773_2332103_+	NA|652aa|up_9|NZ_CP040229.1_2311723_2313679_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|270aa|up_8|NZ_CP040229.1_2314288_2315098_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|65aa|up_7|NZ_CP040229.1_2315166_2315361_-	NA	NA|467aa|up_6|NZ_CP040229.1_2315534_2316935_-	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|361aa|up_5|NZ_CP040229.1_2317029_2318112_-	pfam02317, Octopine_DH, NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain	NA|141aa|up_4|NZ_CP040229.1_2318359_2318782_+	COG3296, COG3296, Uncharacterized protein conserved in bacteria [Function unknown]	NA|165aa|up_3|NZ_CP040229.1_2319018_2319513_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|318aa|up_2|NZ_CP040229.1_2319875_2320829_+	cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains	NA|375aa|up_1|NZ_CP040229.1_2320920_2322045_-	PRK06753, PRK06753, hypothetical protein; Provisional	NA|80aa|up_0|NZ_CP040229.1_2322117_2322357_-	NA	NA|213aa|down_0|NZ_CP040229.1_2322653_2323292_-	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|78aa|down_1|NZ_CP040229.1_2323451_2323685_-	NA	NA|158aa|down_2|NZ_CP040229.1_2323979_2324453_-	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|985aa|down_3|NZ_CP040229.1_2324452_2327407_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|308aa|down_4|NZ_CP040229.1_2328008_2328932_-	PRK09379, PRK09379, LytR family transcriptional regulator	NA|266aa|down_5|NZ_CP040229.1_2329088_2329886_-	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]	WYL|231aa|down_6|NZ_CP040229.1_2330270_2330963_+	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|246aa|down_7|NZ_CP040229.1_2330987_2331725_-	pfam02517, Abi, CAAX protease self-immunity	NA|110aa|down_8|NZ_CP040229.1_2331773_2332103_+	NA	NA|291aa|down_9|NZ_CP040229.1_2332547_2333420_+	COG1737, RpiR, Transcriptional regulators [Transcription]
GCF_005931015.1_ASM593101v1	NZ_CP040229	Staphylococcus aureus strain GD487 chromosome, complete genome	10	2439908-2440002	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Orphan	TTCTTCAAATTTATTTGTTAGAAAGGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA|35aa|up_2|NZ_CP040229.1_2437629_2437734_+,NA|40aa|down_0|NZ_CP040229.1_2440180_2440300_-	NA|200aa|up_9|NZ_CP040229.1_2431106_2431706_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|up_8|NZ_CP040229.1_2431724_2432087_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|up_7|NZ_CP040229.1_2432341_2433592_+	pfam02388, FemAB, FemAB family	NA|244aa|up_6|NZ_CP040229.1_2433688_2434420_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_5|NZ_CP040229.1_2434416_2435136_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_4|NZ_CP040229.1_2435116_2435896_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|480aa|up_3|NZ_CP040229.1_2436016_2437456_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|35aa|up_2|NZ_CP040229.1_2437629_2437734_+	NA	NA|229aa|up_1|NZ_CP040229.1_2437887_2438574_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|NZ_CP040229.1_2438900_2439767_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|40aa|down_0|NZ_CP040229.1_2440180_2440300_-	NA	NA|437aa|down_1|NZ_CP040229.1_2440394_2441705_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|310aa|down_2|NZ_CP040229.1_2442240_2443170_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_3|NZ_CP040229.1_2443737_2444685_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_4|NZ_CP040229.1_2444686_2445664_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|down_5|NZ_CP040229.1_2445715_2446183_-	pfam06177, QueT, QueT transporter	NA|231aa|down_6|NZ_CP040229.1_2446193_2446886_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|down_7|NZ_CP040229.1_2446896_2448012_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|down_8|NZ_CP040229.1_2447989_2448997_-	PRK06256, PRK06256, biotin synthase; Validated	NA|453aa|down_9|NZ_CP040229.1_2448998_2450357_-	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase
GCF_005931015.1_ASM593101v1	NZ_CP040229	Staphylococcus aureus strain GD487 chromosome, complete genome	11	2527510-2527620	11	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Orphan	GGTACTTCTGGTGTCGGTGGCGTTGGT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA|89aa|up_3|NZ_CP040229.1_2521813_2522080_+,NA|103aa|up_2|NZ_CP040229.1_2522223_2522532_+,NA|98aa|down_0|NZ_CP040229.1_2530426_2530720_-,NA|68aa|down_8|NZ_CP040229.1_2539390_2539594_-	NA|262aa|up_9|NZ_CP040229.1_2514559_2515345_-	pfam04507, DUF576, Csa1 family	NA|255aa|up_8|NZ_CP040229.1_2515592_2516357_-	pfam04507, DUF576, Csa1 family	NA|258aa|up_7|NZ_CP040229.1_2516468_2517242_-	pfam04507, DUF576, Csa1 family	NA|310aa|up_6|NZ_CP040229.1_2517484_2518414_-	pfam09019, EcoRII-C, EcoRII C terminal	NA|398aa|up_5|NZ_CP040229.1_2518509_2519703_+	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|584aa|up_4|NZ_CP040229.1_2519778_2521530_+	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|89aa|up_3|NZ_CP040229.1_2521813_2522080_+	NA	NA|103aa|up_2|NZ_CP040229.1_2522223_2522532_+	NA	NA|289aa|up_1|NZ_CP040229.1_2522657_2523524_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|952aa|up_0|NZ_CP040229.1_2523703_2526559_-	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|98aa|down_0|NZ_CP040229.1_2530426_2530720_-	NA	NA|453aa|down_1|NZ_CP040229.1_2530760_2532119_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|518aa|down_2|NZ_CP040229.1_2532235_2533789_-	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|226aa|down_3|NZ_CP040229.1_2533813_2534491_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|255aa|down_4|NZ_CP040229.1_2534647_2535412_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|231aa|down_5|NZ_CP040229.1_2535576_2536269_-	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|139aa|down_6|NZ_CP040229.1_2536499_2536916_-	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|608aa|down_7|NZ_CP040229.1_2537054_2538878_-	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|68aa|down_8|NZ_CP040229.1_2539390_2539594_-	NA	NA|426aa|down_9|NZ_CP040229.1_2539789_2541067_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily
