assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_005890115.1_ASM589011v1	NZ_CP040643	Escherichia coli strain BE104 chromosome, complete genome	1	497739-497883	1	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|28aa|up_2|NZ_CP040643.1_495609_495693_+,NA	NA|372aa|up_9|NZ_CP040643.1_490365_491481_+	PRK10245, adrA, diguanylate cyclase AdrA; Provisional	NA|270aa|up_8|NZ_CP040643.1_491497_492307_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|153aa|up_7|NZ_CP040643.1_492426_492885_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|175aa|up_6|NZ_CP040643.1_493067_493592_+	PRK03731, aroL, shikimate kinase AroL	NA|64aa|up_5|NZ_CP040643.1_493641_493833_+	PRK10380, PRK10380, hypothetical protein; Provisional	NA|226aa|up_4|NZ_CP040643.1_494090_494768_+	PRK10481, PRK10481, hypothetical protein; Provisional	NA|95aa|up_3|NZ_CP040643.1_494839_495124_+	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|28aa|up_2|NZ_CP040643.1_495609_495693_+	NA	NA|304aa|up_1|NZ_CP040643.1_495770_496682_-	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|303aa|up_0|NZ_CP040643.1_496806_497715_+	PRK09557, PRK09557, fructokinase; Reviewed	NA|395aa|down_0|NZ_CP040643.1_497959_499144_-	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|1049aa|down_1|NZ_CP040643.1_499269_502416_-	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|401aa|down_2|NZ_CP040643.1_502412_503615_-	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|230aa|down_3|NZ_CP040643.1_503804_504494_+	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|432aa|down_4|NZ_CP040643.1_504551_505847_+	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|440aa|down_5|NZ_CP040643.1_506253_507573_+	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|458aa|down_6|NZ_CP040643.1_507648_509022_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|606aa|down_7|NZ_CP040643.1_509177_510995_+	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|194aa|down_8|NZ_CP040643.1_510999_511581_-	PRK10045, PRK10045, ACP phosphodiesterase	NA|357aa|down_9|NZ_CP040643.1_511673_512744_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
GCF_005890115.1_ASM589011v1	NZ_CP040643	Escherichia coli strain BE104 chromosome, complete genome	2	638029-638125	2	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|454aa|up_9|NZ_CP040643.1_625809_627171_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP040643.1_627227_628529_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP040643.1_628550_629696_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP040643.1_629923_630709_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_5|NZ_CP040643.1_630719_631955_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP040643.1_631976_633026_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP040643.1_633342_635010_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP040643.1_635019_636279_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP040643.1_636289_637105_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP040643.1_637101_637995_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP040643.1_638189_639257_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP040643.1_639253_639763_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP040643.1_639880_640603_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP040643.1_640605_641100_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP040643.1_641273_642659_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP040643.1_642694_643216_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP040643.1_643323_643536_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP040643.1_643537_644404_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP040643.1_644874_645417_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP040643.1_645636_646329_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_005890115.1_ASM589011v1	NZ_CP040643	Escherichia coli strain BE104 chromosome, complete genome	3	2478755-2478881	3	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|441aa|up_9|NZ_CP040643.1_2456309_2457632_+	pfam02667, SCFA_trans, Short chain fatty acid transporter	NA|395aa|up_8|NZ_CP040643.1_2457662_2458847_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_7|NZ_CP040643.1_2458920_2459697_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_6|NZ_CP040643.1_2459701_2461351_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|208aa|up_5|NZ_CP040643.1_2465889_2466513_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP040643.1_2466509_2468198_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP040643.1_2468346_2470974_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP040643.1_2471120_2471843_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NZ_CP040643.1_2471970_2475723_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP040643.1_2476418_2478704_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP040643.1_2478937_2480068_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP040643.1_2480067_2480322_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP040643.1_2480375_2481026_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP040643.1_2481488_2482565_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_CP040643.1_2482569_2483928_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_CP040643.1_2484200_2485829_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_CP040643.1_2485818_2487078_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_CP040643.1_2487074_2488265_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|300aa|down_8|NZ_CP040643.1_2488457_2489357_+	PRK09956, PRK09956, ISNCY family transposase	NA|62aa|down_9|NZ_CP040643.1_2489369_2489555_+	PRK09956, PRK09956, ISNCY family transposase
GCF_005890115.1_ASM589011v1	NZ_CP040643	Escherichia coli strain BE104 chromosome, complete genome	4	3009254-3010016	4,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	12,12,9	12	TypeI-E	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP040643.1_3001065_3001827_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP040643.1_3001807_3002857_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP040643.1_3002853_3003333_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP040643.1_3003332_3004043_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP040643.1_3004061_3004373_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP040643.1_3004566_3004890_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP040643.1_3004939_3005545_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP040643.1_3005544_3006972_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP040643.1_3006973_3007882_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP040643.1_3008133_3009171_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NZ_CP040643.1_3010121_3010406_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_CP040643.1_3010407_3011325_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|NZ_CP040643.1_3011340_3011940_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|225aa|down_3|NZ_CP040643.1_3011926_3012601_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|364aa|down_4|NZ_CP040643.1_3012603_3013695_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|down_5|NZ_CP040643.1_3013707_3014190_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|503aa|down_6|NZ_CP040643.1_3014182_3015691_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cas3|889aa|down_7|NZ_CP040643.1_3016105_3018772_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|245aa|down_8|NZ_CP040643.1_3019130_3019865_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP040643.1_3019939_3021652_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_005890115.1_ASM589011v1	NZ_CP040643	Escherichia coli strain BE104 chromosome, complete genome	5	3035567-3035960	2,5,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	GGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	28,28,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Unclear	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|47aa|down_1|NZ_CP040643.1_3037109_3037250_+	NA|424aa|up_9|NZ_CP040643.1_3024209_3025481_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP040643.1_3025471_3025732_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP040643.1_3025748_3026324_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP040643.1_3026471_3027332_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP040643.1_3027328_3028108_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|NZ_CP040643.1_3028085_3029423_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP040643.1_3029516_3030971_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP040643.1_3031040_3031826_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP040643.1_3032144_3033422_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP040643.1_3033448_3034927_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP040643.1_3036299_3036971_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP040643.1_3037109_3037250_+	NA	NA|291aa|down_2|NZ_CP040643.1_3037263_3038136_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP040643.1_3038195_3039494_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP040643.1_3039581_3041219_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP040643.1_3041446_3042238_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP040643.1_3042308_3042644_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP040643.1_3042643_3042892_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|425aa|down_8|NZ_CP040643.1_3044960_3046234_-	PRK09409, PRK09409, IS2 transposase TnpB; Reviewed	NA|434aa|down_9|NZ_CP040643.1_3046587_3047889_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
