assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_005890035.1_ASM589003v1	NZ_CP040623	Staphylococcus aureus strain D592-HR chromosome, complete genome	1	424299-424400	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_9|NZ_CP040623.1_415858_416068_-,NA|128aa|up_7|NZ_CP040623.1_416892_417276_-,NA|33aa|up_1|NZ_CP040623.1_423523_423622_+,NA|86aa|up_0|NZ_CP040623.1_423832_424090_-,NA|221aa|down_1|NZ_CP040623.1_425490_426153_-,NA|179aa|down_7|NZ_CP040623.1_432244_432781_-	NA|70aa|up_9|NZ_CP040623.1_415858_416068_-	NA	NA|194aa|up_8|NZ_CP040623.1_416245_416827_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NZ_CP040623.1_416892_417276_-	NA	NA|209aa|up_6|NZ_CP040623.1_417545_418172_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_5|NZ_CP040623.1_418615_420139_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|NZ_CP040623.1_420154_420724_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|NZ_CP040623.1_421215_421971_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|NZ_CP040623.1_422050_423439_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_1|NZ_CP040623.1_423523_423622_+	NA	NA|86aa|up_0|NZ_CP040623.1_423832_424090_-	NA	NA|319aa|down_0|NZ_CP040623.1_424416_425373_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NZ_CP040623.1_425490_426153_-	NA	NA|136aa|down_2|NZ_CP040623.1_426295_426703_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP040623.1_427215_427794_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP040623.1_427793_429062_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP040623.1_429099_430566_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP040623.1_430590_432132_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP040623.1_432244_432781_-	NA	NA|235aa|down_8|NZ_CP040623.1_433172_433877_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP040623.1_434275_434548_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_005890035.1_ASM589003v1	NZ_CP040623	Staphylococcus aureus strain D592-HR chromosome, complete genome	2	779550-779632	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|69aa|up_9|NZ_CP040623.1_766163_766370_+,NA|56aa|down_0|NZ_CP040623.1_779843_780011_+,NA|34aa|down_2|NZ_CP040623.1_781287_781389_+,NA|82aa|down_4|NZ_CP040623.1_783037_783283_-,NA|89aa|down_7|NZ_CP040623.1_785083_785350_+	NA|69aa|up_9|NZ_CP040623.1_766163_766370_+	NA	NA|237aa|up_8|NZ_CP040623.1_766457_767168_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP040623.1_767151_768156_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP040623.1_768629_770570_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP040623.1_770839_772723_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP040623.1_772734_774516_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP040623.1_774737_775715_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP040623.1_775707_777222_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP040623.1_777461_778520_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP040623.1_778858_779401_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|56aa|down_0|NZ_CP040623.1_779843_780011_+	NA	NA|306aa|down_1|NZ_CP040623.1_780279_781197_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_2|NZ_CP040623.1_781287_781389_+	NA	NA|502aa|down_3|NZ_CP040623.1_781466_782972_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|82aa|down_4|NZ_CP040623.1_783037_783283_-	NA	NA|167aa|down_5|NZ_CP040623.1_783312_783813_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_6|NZ_CP040623.1_783832_784699_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|89aa|down_7|NZ_CP040623.1_785083_785350_+	NA	NA|133aa|down_8|NZ_CP040623.1_785499_785898_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_9|NZ_CP040623.1_785860_787966_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated
GCF_005890035.1_ASM589003v1	NZ_CP040623	Staphylococcus aureus strain D592-HR chromosome, complete genome	3	820497-820575	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	1	820521-820551	NZ_CP040623.1_1692661-1692691	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|NZ_CP040623.1_811373_811478_+,NA|36aa|up_5|NZ_CP040623.1_812910_813018_+,NA	NA|191aa|up_9|NZ_CP040623.1_807814_808387_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP040623.1_808800_811332_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP040623.1_811373_811478_+	NA	NA|370aa|up_6|NZ_CP040623.1_811646_812757_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP040623.1_812910_813018_+	NA	NA|280aa|up_4|NZ_CP040623.1_813165_814005_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP040623.1_814178_814829_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP040623.1_814825_815062_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP040623.1_815330_817316_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP040623.1_817323_820170_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP040623.1_820833_821766_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP040623.1_821771_822611_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP040623.1_822618_823104_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP040623.1_823111_824551_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP040623.1_824617_825553_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP040623.1_826438_827350_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP040623.1_827346_828342_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP040623.1_828452_829397_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP040623.1_829960_830548_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP040623.1_830790_831693_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_005890035.1_ASM589003v1	NZ_CP040623	Staphylococcus aureus strain D592-HR chromosome, complete genome	4	825952-826221	1	CRT	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TTCTCTGTGTTGGGGCCCACACCCCAACTNGCATTG	36	4	40	825988-826009|825988-826009|825988-826009|825988-826009|825988-826009|825988-826009|825988-826009|825988-826009|825988-826009|825988-826009|825988-826009|825988-826009|825988-826009|826046-826068|826046-826068|826046-826068|826046-826068|826046-826068|826046-826068|826046-826068|826105-826126|826105-826126|826105-826126|826105-826126|826105-826126|826105-826126|826105-826126|826105-826126|826105-826126|826105-826126|826105-826126|826105-826126|826105-826126|826163-826185|826163-826185|826163-826185|826163-826185|826163-826185|826163-826185|826163-826185	NZ_CP040623.1_778591-778612|NZ_CP040623.1_869264-869285|NZ_CP040623.1_1476676-1476697|NZ_CP040623.1_1658254-1658275|NZ_CP040623.1_1989943-1989964|NZ_CP040623.1_186221-186200|NZ_CP040623.1_309284-309263|NZ_CP040623.1_652564-652543|NZ_CP040623.1_1388150-1388129|NZ_CP040623.1_1672809-1672788|NZ_CP040623.1_983579-983600|NZ_CP040623.1_1692516-1692537|NZ_CP040623.1_1692749-1692770|NZ_CP040623.1_779563-779541|NZ_CP040623.1_779841-779819|NZ_CP040623.1_1388267-1388245|NZ_CP040623.1_1990001-1990023|NZ_CP040623.1_2329613-2329635|NZ_CP040623.1_1476559-1476581|NZ_CP040623.1_2090909-2090931|NZ_CP040623.1_778591-778612|NZ_CP040623.1_869264-869285|NZ_CP040623.1_1476676-1476697|NZ_CP040623.1_1658254-1658275|NZ_CP040623.1_1989943-1989964|NZ_CP040623.1_186221-186200|NZ_CP040623.1_309284-309263|NZ_CP040623.1_652564-652543|NZ_CP040623.1_1388150-1388129|NZ_CP040623.1_1672809-1672788|NZ_CP040623.1_983579-983600|NZ_CP040623.1_1692516-1692537|NZ_CP040623.1_1692749-1692770|NZ_CP040623.1_779563-779541|NZ_CP040623.1_779841-779819|NZ_CP040623.1_1388267-1388245|NZ_CP040623.1_1990001-1990023|NZ_CP040623.1_2329613-2329635|NZ_CP040623.1_1476559-1476581|NZ_CP040623.1_2090909-2090931	NA	4	4	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA|61aa|down_6|NZ_CP040623.1_833288_833471_+	NA|280aa|up_9|NZ_CP040623.1_813165_814005_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP040623.1_814178_814829_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP040623.1_814825_815062_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP040623.1_815330_817316_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP040623.1_817323_820170_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP040623.1_820833_821766_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP040623.1_821771_822611_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP040623.1_822618_823104_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP040623.1_823111_824551_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP040623.1_824617_825553_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP040623.1_826438_827350_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP040623.1_827346_828342_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP040623.1_828452_829397_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP040623.1_829960_830548_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP040623.1_830790_831693_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|214aa|down_5|NZ_CP040623.1_832395_833037_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|61aa|down_6|NZ_CP040623.1_833288_833471_+	NA	NA|338aa|down_7|NZ_CP040623.1_833793_834807_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_8|NZ_CP040623.1_834859_835870_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_9|NZ_CP040623.1_836008_837199_+	PRK00073, pgk, phosphoglycerate kinase; Provisional
GCF_005890035.1_ASM589003v1	NZ_CP040623	Staphylococcus aureus strain D592-HR chromosome, complete genome	5	833278-833357	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CAGCTTCTGTGTTGGGGCCCCGCC	24	1	6	833302-833333|833302-833333|833302-833333|833302-833333|833302-833333|833302-833333	NZ_CP040623.1_88385-88416|NZ_CP040623.1_869522-869553|NZ_CP040623.1_1672878-1672847|NZ_CP040623.1_2114933-2114902|NZ_CP040623.1_2505350-2505381|NZ_CP040623.1_1388334-1388303	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA|153aa|down_6|NZ_CP040623.1_841374_841833_+	NA|280aa|up_9|NZ_CP040623.1_821771_822611_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_8|NZ_CP040623.1_822618_823104_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_7|NZ_CP040623.1_823111_824551_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_6|NZ_CP040623.1_824617_825553_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|up_5|NZ_CP040623.1_826438_827350_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|up_4|NZ_CP040623.1_827346_828342_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|up_3|NZ_CP040623.1_828452_829397_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|up_2|NZ_CP040623.1_829960_830548_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|up_1|NZ_CP040623.1_830790_831693_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|214aa|up_0|NZ_CP040623.1_832395_833037_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_0|NZ_CP040623.1_833793_834807_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_1|NZ_CP040623.1_834859_835870_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_2|NZ_CP040623.1_836008_837199_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_3|NZ_CP040623.1_837320_838082_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|506aa|down_4|NZ_CP040623.1_838084_839602_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|435aa|down_5|NZ_CP040623.1_839731_841036_+	PRK00077, eno, enolase; Provisional	NA|153aa|down_6|NZ_CP040623.1_841374_841833_+	NA	NA|78aa|down_7|NZ_CP040623.1_841899_842133_+	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|247aa|down_8|NZ_CP040623.1_842248_842989_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|791aa|down_9|NZ_CP040623.1_843022_845395_+	TIGR02063, Ribonuclease_R, ribonuclease R
GCF_005890035.1_ASM589003v1	NZ_CP040623	Staphylococcus aureus strain D592-HR chromosome, complete genome	6	869191-869272	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	869215-869248	NZ_CP040623.1_1388258-1388225	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|62aa|up_8|NZ_CP040623.1_864410_864596_+,NA|38aa|up_1|NZ_CP040623.1_868093_868207_+,NA	NA|165aa|up_9|NZ_CP040623.1_863719_864214_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|62aa|up_8|NZ_CP040623.1_864410_864596_+	NA	NA|141aa|up_7|NZ_CP040623.1_864612_865035_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP040623.1_865182_865899_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP040623.1_865981_866521_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP040623.1_866671_866992_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP040623.1_867135_867492_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP040623.1_867649_868030_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP040623.1_868093_868207_+	NA	NA|293aa|up_0|NZ_CP040623.1_868208_869087_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP040623.1_869884_870271_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP040623.1_870263_870560_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP040623.1_870809_871835_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP040623.1_871827_872523_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP040623.1_872540_873362_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP040623.1_873715_873910_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP040623.1_874143_874995_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP040623.1_875322_876084_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP040623.1_876181_877489_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|NZ_CP040623.1_877603_878845_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_005890035.1_ASM589003v1	NZ_CP040623	Staphylococcus aureus strain D592-HR chromosome, complete genome	7	1658178-1658262	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	1	1658204-1658236	NZ_CP040623.1_1388258-1388226	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|228aa|up_9|NZ_CP040623.1_1647387_1648071_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NZ_CP040623.1_1648314_1648491_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_CP040623.1_1648783_1650130_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_CP040623.1_1650136_1650889_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_CP040623.1_1650890_1651829_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_CP040623.1_1651832_1652972_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_CP040623.1_1653107_1654940_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_CP040623.1_1655008_1655635_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_CP040623.1_1655666_1656644_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_CP040623.1_1656744_1657869_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_CP040623.1_1658434_1660258_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_CP040623.1_1660603_1660855_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_CP040623.1_1660899_1661874_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|716aa|down_3|NZ_CP040623.1_1661930_1664078_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_CP040623.1_1664136_1664598_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_CP040623.1_1664689_1665376_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_CP040623.1_1665415_1666132_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_CP040623.1_1666134_1666488_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_CP040623.1_1666488_1667073_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_CP040623.1_1667062_1667632_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_005890035.1_ASM589003v1	NZ_CP040623	Staphylococcus aureus strain D592-HR chromosome, complete genome	8	2090828-2090909	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	GGCCCCCACCCCAACTTACATTGT	24	1	5	2090852-2090885|2090852-2090885|2090852-2090885|2090852-2090885|2090852-2090885	NZ_CP040623.1_820496-820529|NZ_CP040623.1_1176516-1176483|NZ_CP040623.1_1784910-1784877|NZ_CP040623.1_1392599-1392632|NZ_CP040623.1_2778954-2778987	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|61aa|up_5|NZ_CP040623.1_2083533_2083716_+,NA	NA|81aa|up_9|NZ_CP040623.1_2081072_2081315_-	pfam05339, DUF739, Protein of unknown function (DUF739)	NA|239aa|up_8|NZ_CP040623.1_2081478_2082195_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|285aa|up_7|NZ_CP040623.1_2082206_2083061_+	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|62aa|up_6|NZ_CP040623.1_2083277_2083463_+	pfam00815, Histidinol_dh, Histidinol dehydrogenase	NA|61aa|up_5|NZ_CP040623.1_2083533_2083716_+	NA	NA|238aa|up_4|NZ_CP040623.1_2083794_2084508_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|346aa|up_3|NZ_CP040623.1_2084698_2085736_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_2|NZ_CP040623.1_2086854_2087871_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NZ_CP040623.1_2087892_2088948_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NZ_CP040623.1_2089383_2090607_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NZ_CP040623.1_2091050_2092358_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|539aa|down_1|NZ_CP040623.1_2092897_2094514_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|NZ_CP040623.1_2094589_2094874_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|NZ_CP040623.1_2095048_2095792_+	pfam02517, Abi, CAAX protease self-immunity	NA|420aa|down_4|NZ_CP040623.1_2095816_2097076_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|NZ_CP040623.1_2097272_2097899_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|NZ_CP040623.1_2098259_2099045_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|NZ_CP040623.1_2099644_2099779_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|212aa|down_8|NZ_CP040623.1_2099960_2100596_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|48aa|down_9|NZ_CP040623.1_2100579_2100723_+	smart00794, AgrD, Staphylococcal AgrD protein
GCF_005890035.1_ASM589003v1	NZ_CP040623	Staphylococcus aureus strain D592-HR chromosome, complete genome	9	2220083-2220163	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|77aa|up_5|NZ_CP040623.1_2214957_2215188_-,NA|364aa|up_0|NZ_CP040623.1_2218974_2220066_+,NA|35aa|down_0|NZ_CP040623.1_2220498_2220603_-,NA|61aa|down_1|NZ_CP040623.1_2221035_2221218_-,NA|53aa|down_2|NZ_CP040623.1_2221282_2221441_+,NA|31aa|down_3|NZ_CP040623.1_2221877_2221970_+	NA|237aa|up_9|NZ_CP040623.1_2210568_2211279_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP040623.1_2211399_2211843_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP040623.1_2212042_2212456_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP040623.1_2212912_2214286_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP040623.1_2214957_2215188_-	NA	NA|313aa|up_4|NZ_CP040623.1_2215218_2216157_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP040623.1_2216592_2217258_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP040623.1_2217409_2217730_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP040623.1_2217731_2218709_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP040623.1_2218974_2220066_+	NA	NA|35aa|down_0|NZ_CP040623.1_2220498_2220603_-	NA	NA|61aa|down_1|NZ_CP040623.1_2221035_2221218_-	NA	NA|53aa|down_2|NZ_CP040623.1_2221282_2221441_+	NA	NA|31aa|down_3|NZ_CP040623.1_2221877_2221970_+	NA	NA|286aa|down_4|NZ_CP040623.1_2222098_2222956_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_5|NZ_CP040623.1_2223023_2223806_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_6|NZ_CP040623.1_2224037_2225843_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_7|NZ_CP040623.1_2226523_2228062_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_8|NZ_CP040623.1_2228096_2230229_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_9|NZ_CP040623.1_2230240_2230675_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]
GCF_005890035.1_ASM589003v1	NZ_CP040623	Staphylococcus aureus strain D592-HR chromosome, complete genome	10	2232404-2232489	9	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|61aa|up_9|NZ_CP040623.1_2221035_2221218_-,NA|53aa|up_8|NZ_CP040623.1_2221282_2221441_+,NA|31aa|up_7|NZ_CP040623.1_2221877_2221970_+,NA	NA|61aa|up_9|NZ_CP040623.1_2221035_2221218_-	NA	NA|53aa|up_8|NZ_CP040623.1_2221282_2221441_+	NA	NA|31aa|up_7|NZ_CP040623.1_2221877_2221970_+	NA	NA|286aa|up_6|NZ_CP040623.1_2222098_2222956_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP040623.1_2223023_2223806_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP040623.1_2224037_2225843_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP040623.1_2226523_2228062_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP040623.1_2228096_2230229_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP040623.1_2230240_2230675_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP040623.1_2230674_2231781_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP040623.1_2239822_2241178_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP040623.1_2241204_2242137_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP040623.1_2242138_2242948_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP040623.1_2243136_2244045_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP040623.1_2250285_2251350_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP040623.1_2251497_2252940_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP040623.1_2253262_2253736_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP040623.1_2253834_2255178_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP040623.1_2255354_2256038_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP040623.1_2256056_2257244_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_005890035.1_ASM589003v1	NZ_CP040623	Staphylococcus aureus strain D592-HR chromosome, complete genome	11	2340442-2340522	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	14	2340467-2340497|2340467-2340497|2340467-2340497|2340467-2340497|2340467-2340497|2340467-2340497|2340467-2340497|2340467-2340497|2340467-2340497|2340467-2340497|2340467-2340497|2340467-2340497|2340467-2340497|2340467-2340497	NZ_CP040623.1_833252-833282|NZ_CP040623.1_88391-88421|NZ_CP040623.1_869528-869558|NZ_CP040623.1_1079557-1079587|NZ_CP040623.1_1476612-1476642|NZ_CP040623.1_1476728-1476758|NZ_CP040623.1_1988595-1988625|NZ_CP040623.1_2329666-2329696|NZ_CP040623.1_2505356-2505386|NZ_CP040623.1_385591-385561|NZ_CP040623.1_652628-652598|NZ_CP040623.1_1182114-1182084|NZ_CP040623.1_1388214-1388184|NZ_CP040623.1_1672872-1672842	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|55aa|up_9|NZ_CP040623.1_2330975_2331140_+,NA|106aa|up_8|NZ_CP040623.1_2331384_2331702_+,NA|84aa|up_5|NZ_CP040623.1_2336823_2337075_+,NA|62aa|up_0|NZ_CP040623.1_2340214_2340400_+,NA	NA|55aa|up_9|NZ_CP040623.1_2330975_2331140_+	NA	NA|106aa|up_8|NZ_CP040623.1_2331384_2331702_+	NA	NA|1056aa|up_7|NZ_CP040623.1_2331885_2335053_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP040623.1_2335169_2336435_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP040623.1_2336823_2337075_+	NA	NA|255aa|up_4|NZ_CP040623.1_2337066_2337831_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP040623.1_2337992_2338433_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP040623.1_2338425_2339637_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP040623.1_2339738_2340089_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP040623.1_2340214_2340400_+	NA	NA|341aa|down_0|NZ_CP040623.1_2340665_2341688_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP040623.1_2341707_2342307_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP040623.1_2342313_2342547_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP040623.1_2342552_2342999_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP040623.1_2343012_2343498_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP040623.1_2343494_2344754_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP040623.1_2344816_2345311_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP040623.1_2345312_2345819_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP040623.1_2345849_2346854_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP040623.1_2347023_2347629_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
