assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_005887635.2_ASM588763v2	NZ_CP040818	Paraoceanicella profunda strain D4M1 chromosome, complete genome	1	270637-270812	1	CRISPRCasFinder	no		WYL,RT,DEDDh,csa3	Orphan	GTGCTGCACCGGGCGCCTCCCGCG	24	0	0	NA	NA	NA	3	3	Orphan	WYL,RT,DEDDh,csa3	NA|212aa|up_0|NZ_CP040818.1_269736_270372_+,NA	NA|363aa|up_9|NZ_CP040818.1_258598_259687_-	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional	NA|494aa|up_8|NZ_CP040818.1_259687_261169_-	PRK14093, PRK14093, UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional	NA|501aa|up_7|NZ_CP040818.1_261165_262668_-	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional	NA|591aa|up_6|NZ_CP040818.1_262685_264458_-	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|141aa|up_5|NZ_CP040818.1_264454_264877_-	COG5462, COG5462, Predicted secreted (periplasmic) protein [Function unknown]	NA|337aa|up_4|NZ_CP040818.1_264876_265887_-	PRK00050, PRK00050, 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA|166aa|up_3|NZ_CP040818.1_265883_266381_-	PRK00326, PRK00326, transcriptional regulator MraZ	NA|213aa|up_2|NZ_CP040818.1_267839_268478_-	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|374aa|up_1|NZ_CP040818.1_268564_269686_-	PRK06520, PRK06520, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	NA|212aa|up_0|NZ_CP040818.1_269736_270372_+	NA	NA|363aa|down_0|NZ_CP040818.1_271296_272385_+	pfam05145, AbrB, Transition state regulatory protein AbrB	NA|293aa|down_1|NZ_CP040818.1_272897_273776_-	PRK09636, PRK09636, RNA polymerase sigma factor SigJ; Provisional	NA|153aa|down_2|NZ_CP040818.1_273779_274238_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|312aa|down_3|NZ_CP040818.1_274690_275626_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|499aa|down_4|NZ_CP040818.1_275843_277340_+	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|380aa|down_5|NZ_CP040818.1_277797_278937_+	cd01162, IBD, Isobutyryl-CoA dehydrogenase	NA|344aa|down_6|NZ_CP040818.1_278933_279965_+	pfam16113, ECH_2, Enoyl-CoA hydratase/isomerase	NA|291aa|down_7|NZ_CP040818.1_280077_280950_+	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|255aa|down_8|NZ_CP040818.1_281040_281805_+	pfam05239, PRC, PRC-barrel domain	NA|210aa|down_9|NZ_CP040818.1_282310_282940_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive
GCF_005887635.2_ASM588763v2	NZ_CP040818	Paraoceanicella profunda strain D4M1 chromosome, complete genome	2	309868-309978	2	CRISPRCasFinder	no		WYL,RT,DEDDh,csa3	Orphan	GGCGCGGCGCCCACCACGGAGAGCGCTGCC	30	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,DEDDh,csa3	NA,NA	NA|252aa|up_9|NZ_CP040818.1_296005_296761_-	PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|431aa|up_8|NZ_CP040818.1_297237_298530_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|187aa|up_7|NZ_CP040818.1_298852_299413_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|342aa|up_6|NZ_CP040818.1_299617_300643_+	cd13589, PBP2_polyamine_RpCGA009, The periplasmic-binding component of an uncharacterized ABC transport system from Rhodopseudomonas palustris CGA009 and related proteins; contains the type 2 periplasmic-binding fold	NA|371aa|up_5|NZ_CP040818.1_300735_301848_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|311aa|up_4|NZ_CP040818.1_301844_302777_+	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|273aa|up_3|NZ_CP040818.1_302778_303597_+	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|315aa|up_2|NZ_CP040818.1_303781_304726_-	cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains	NA|556aa|up_1|NZ_CP040818.1_304755_306423_-	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|745aa|up_0|NZ_CP040818.1_307035_309270_-	TIGR02123, conserved_inner_membrane_protein, TRAP transporter, 4TM/12TM fusion protein	NA|328aa|down_0|NZ_CP040818.1_310222_311206_-	cd13567, PBP2_TtGluBP, Substrate binding domain of Thermus thermophilus GluBP (TtGluBP) of TAXI family of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|272aa|down_1|NZ_CP040818.1_311348_312164_+	TIGR02017, hutG_amidohyd, N-formylglutamate amidohydrolase	NA|475aa|down_2|NZ_CP040818.1_312160_313585_+	PRK09229, PRK09229, N-formimino-L-glutamate deiminase; Validated	NA|250aa|down_3|NZ_CP040818.1_313585_314335_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|295aa|down_4|NZ_CP040818.1_314367_315252_-	PRK13011, PRK13011, formyltetrahydrofolate deformylase; Reviewed	NA|203aa|down_5|NZ_CP040818.1_315931_316540_-	COG4583, COG4583, Sarcosine oxidase gamma subunit [Amino acid transport and metabolism]	NA|980aa|down_6|NZ_CP040818.1_317090_320030_-	TIGR01372, sarcosine_oxidase_alpha_subunit, sarcosine oxidase, alpha subunit family, heterotetrameric form	NA|417aa|down_7|NZ_CP040818.1_320872_322123_-	TIGR01373, Sarcosine_oxidase_subunit_beta, sarcosine oxidase, beta subunit family, heterotetrameric form	NA|308aa|down_8|NZ_CP040818.1_322283_323207_+	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|322aa|down_9|NZ_CP040818.1_323593_324559_-	pfam05661, DUF808, Protein of unknown function (DUF808)
GCF_005887635.2_ASM588763v2	NZ_CP040818	Paraoceanicella profunda strain D4M1 chromosome, complete genome	3	1912908-1913097	3	CRISPRCasFinder	no		WYL,RT,DEDDh,csa3	Orphan	GGCGCTGATCGCGCGGGCGAGGCG	24	0	0	NA	NA	NA	3	3	Orphan	WYL,RT,DEDDh,csa3	NA,NA|61aa|down_5|NZ_CP040818.1_1920950_1921133_+	NA|242aa|up_9|NZ_CP040818.1_1899461_1900187_+	pfam02586, SRAP, SOS response associated peptidase (SRAP)	NA|156aa|up_8|NZ_CP040818.1_1900993_1901461_+	pfam06718, DUF1203, Protein of unknown function (DUF1203)	NA|482aa|up_7|NZ_CP040818.1_1901467_1902913_-	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_6|NZ_CP040818.1_1902967_1903627_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|338aa|up_5|NZ_CP040818.1_1904265_1905279_+	TIGR02716, C-20_methyltransferase, C-20 methyltransferase BchU	NA|338aa|up_4|NZ_CP040818.1_1905457_1906471_+	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|441aa|up_3|NZ_CP040818.1_1906850_1908173_+	pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain	NA|390aa|up_2|NZ_CP040818.1_1908650_1909820_+	cd14861, Fe-ADH-like, Iron-containing alcohol dehydrogenases-like	NA|226aa|up_1|NZ_CP040818.1_1910375_1911053_-	cd16361, VOC_ShValD_like, vicinal oxygen chelate (VOC) family protein similar to Streptomyces hygroscopicus ValD protein	NA|301aa|up_0|NZ_CP040818.1_1911487_1912390_+	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins	NA|380aa|down_0|NZ_CP040818.1_1913107_1914247_-	COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]	NA|646aa|down_1|NZ_CP040818.1_1914243_1916181_-	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|445aa|down_2|NZ_CP040818.1_1916402_1917737_+	PRK06102, PRK06102, amidase	NA|303aa|down_3|NZ_CP040818.1_1918009_1918918_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|254aa|down_4|NZ_CP040818.1_1919567_1920329_+	COG3703, ChaC, Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]	NA|61aa|down_5|NZ_CP040818.1_1920950_1921133_+	NA	NA|422aa|down_6|NZ_CP040818.1_1921163_1922429_+	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|160aa|down_7|NZ_CP040818.1_1922437_1922917_+	pfam11164, DUF2948, Protein of unknown function (DUF2948)	NA|438aa|down_8|NZ_CP040818.1_1923692_1925006_+	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed	NA|157aa|down_9|NZ_CP040818.1_1925002_1925473_+	pfam06793, UPF0262, Uncharacterized protein family (UPF0262)
GCF_005887635.2_ASM588763v2	NZ_CP040818	Paraoceanicella profunda strain D4M1 chromosome, complete genome	4	3452776-3452838	4	CRISPRCasFinder	no		WYL,RT,DEDDh,csa3	Orphan	TCATGCGCATGGTCCTGGTGATGG	24	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,DEDDh,csa3	NA|116aa|up_5|NZ_CP040818.1_3444968_3445316_-,NA	NA|186aa|up_9|NZ_CP040818.1_3440358_3440916_-	COG3038, CybB, Cytochrome B561 [Energy production and conversion]	NA|235aa|up_8|NZ_CP040818.1_3440908_3441613_-	COG1985, RibD, Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]	NA|485aa|up_7|NZ_CP040818.1_3441669_3443124_-	pfam10129, OpgC_C, OpgC protein	NA|454aa|up_6|NZ_CP040818.1_3443444_3444806_-	cd05804, StaR_like, StaR_like; a well-conserved protein found in bacteria, plants, and animals	NA|116aa|up_5|NZ_CP040818.1_3444968_3445316_-	NA	NA|264aa|up_4|NZ_CP040818.1_3445407_3446199_-	COG2875, CobM, Precorrin-4 methylase [Coenzyme metabolism]	NA|635aa|up_3|NZ_CP040818.1_3446227_3448132_-	cd11646, Precorrin_3B_C17_MT, Precorrin-3B C(17)-methyltransferase (also named CobJ or CbiH)	NA|236aa|up_2|NZ_CP040818.1_3448155_3448863_-	cd11645, Precorrin_2_C20_MT, Precorrin-2 C20-methyltransferase, also named CobI or CbiL	NA|399aa|up_1|NZ_CP040818.1_3449281_3450478_-	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]	NA|249aa|up_0|NZ_CP040818.1_3450474_3451221_-	PRK08285, cobH, precorrin-8X methylmutase; Reviewed	NA|328aa|down_0|NZ_CP040818.1_3454414_3455398_+	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|131aa|down_1|NZ_CP040818.1_3455593_3455986_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|116aa|down_2|NZ_CP040818.1_3456119_3456467_-	cd06150, YjgF_YER057c_UK114_like_2, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|343aa|down_3|NZ_CP040818.1_3456561_3457590_-	cd10001, HDAC_classII_APAH, Histone deacetylase class IIa	NA|601aa|down_4|NZ_CP040818.1_3458120_3459923_-	COG5616, COG5616, Predicted integral membrane protein [Function unknown]	NA|473aa|down_5|NZ_CP040818.1_3460309_3461728_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|278aa|down_6|NZ_CP040818.1_3462063_3462897_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|113aa|down_7|NZ_CP040818.1_3463423_3463762_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|616aa|down_8|NZ_CP040818.1_3463789_3465637_+	cd09610, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|497aa|down_9|NZ_CP040818.1_3465638_3467129_+	cd06460, M32_Taq, Peptidase family M32, which includes thermostable carboxypeptidases TaqCP, PfuCP and FisCP
GCF_005887635.2_ASM588763v2	NZ_CP040819	Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence	1	3339-3482	1	CRISPRCasFinder	no			Orphan	CGCGCCCGGGCGGAGGGCCGTGCGCCAGGCATGACAGCCGAAGGCGG	47	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,DEDDh,csa3	NA,NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|267aa|up_2|NZ_CP040819.1_535_1336_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|309aa|up_1|NZ_CP040819.1_1654_2581_+	pfam05035, DGOK, 2-keto-3-deoxy-galactonokinase	NA|212aa|up_0|NZ_CP040819.1_2584_3220_+	PRK09140, PRK09140, 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed	NA|221aa|down_0|NZ_CP040819.1_3878_4541_+	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|517aa|down_1|NZ_CP040819.1_4757_6308_-	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|449aa|down_2|NZ_CP040819.1_6415_7762_-	PRK10337, PRK10337, sensor protein QseC; Provisional	NA|224aa|down_3|NZ_CP040819.1_7823_8495_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|330aa|down_4|NZ_CP040819.1_8779_9769_+	COG3181, COG3181, Uncharacterized protein conserved in bacteria [Function unknown]	NA|144aa|down_5|NZ_CP040819.1_9865_10297_+	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family	NA|514aa|down_6|NZ_CP040819.1_10309_11851_+	COG3333, COG3333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|225aa|down_7|NZ_CP040819.1_12156_12831_-	pfam06055, ExoD, Exopolysaccharide synthesis, ExoD	NA|409aa|down_8|NZ_CP040819.1_13608_14835_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|657aa|down_9|NZ_CP040819.1_14838_16809_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB
GCF_005887635.2_ASM588763v2	NZ_CP040819	Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence	2	63281-63346	2	CRISPRCasFinder	no			Orphan	CGGCATCGCCGCGGTGCTGCTGG	23	1	5	63304-63322|63304-63322|63304-63322|63304-63322|63304-63322	NZ_CP040818.1_3191430-3191448|NZ_CP040820.1_6060-6078|NZ_CP040820.1_286359-286377|NZ_CP040824.1_86120-86102|NZ_CP040822.1_125463-125445	NA	1	1	Orphan	WYL,RT,DEDDh,csa3	NA,NA	NA|398aa|up_9|NZ_CP040819.1_52102_53296_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|243aa|up_8|NZ_CP040819.1_53246_53975_-	pfam05988, DUF899, Bacterial protein of unknown function (DUF899)	NA|149aa|up_7|NZ_CP040819.1_54062_54509_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|583aa|up_6|NZ_CP040819.1_55013_56762_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|151aa|up_5|NZ_CP040819.1_57188_57641_+	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|340aa|up_4|NZ_CP040819.1_57865_58885_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|241aa|up_3|NZ_CP040819.1_59179_59902_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|513aa|up_2|NZ_CP040819.1_59898_61437_+	COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]	NA|267aa|up_1|NZ_CP040819.1_61453_62254_+	COG0434, SgcQ, Predicted TIM-barrel enzyme [General function prediction only]	NA|264aa|up_0|NZ_CP040819.1_62250_63042_+	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|312aa|down_0|NZ_CP040819.1_64039_64975_+	cd01536, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily	NA|252aa|down_1|NZ_CP040819.1_65000_65756_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|309aa|down_2|NZ_CP040819.1_65876_66803_-	cd08411, PBP2_OxyR, The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily	NA|184aa|down_3|NZ_CP040819.1_66963_67515_+	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides	NA|175aa|down_4|NZ_CP040819.1_67643_68168_+	TIGR00777, AhpD_protein	NA|209aa|down_5|NZ_CP040819.1_68226_68853_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|358aa|down_6|NZ_CP040819.1_68979_70053_+	cd13590, PBP2_PotD_PotF_like, The periplasmic-binding component of ABC transporters involved in uptake of polyamines; possess the type 2 periplasmic binding fold	NA|287aa|down_7|NZ_CP040819.1_70060_70921_+	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|262aa|down_8|NZ_CP040819.1_70920_71706_+	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|359aa|down_9|NZ_CP040819.1_71702_72779_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
GCF_005887635.2_ASM588763v2	NZ_CP040819	Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence	3	63629-63783	3	CRISPRCasFinder	no			Orphan	CGGCATCGCCGCGGTGCTGCTGG	23	0	0	NA	NA	NA	2	2	Orphan	WYL,RT,DEDDh,csa3	NA,NA	NA|398aa|up_9|NZ_CP040819.1_52102_53296_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|243aa|up_8|NZ_CP040819.1_53246_53975_-	pfam05988, DUF899, Bacterial protein of unknown function (DUF899)	NA|149aa|up_7|NZ_CP040819.1_54062_54509_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|583aa|up_6|NZ_CP040819.1_55013_56762_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|151aa|up_5|NZ_CP040819.1_57188_57641_+	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|340aa|up_4|NZ_CP040819.1_57865_58885_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|241aa|up_3|NZ_CP040819.1_59179_59902_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|513aa|up_2|NZ_CP040819.1_59898_61437_+	COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]	NA|267aa|up_1|NZ_CP040819.1_61453_62254_+	COG0434, SgcQ, Predicted TIM-barrel enzyme [General function prediction only]	NA|264aa|up_0|NZ_CP040819.1_62250_63042_+	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|312aa|down_0|NZ_CP040819.1_64039_64975_+	cd01536, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily	NA|252aa|down_1|NZ_CP040819.1_65000_65756_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|309aa|down_2|NZ_CP040819.1_65876_66803_-	cd08411, PBP2_OxyR, The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily	NA|184aa|down_3|NZ_CP040819.1_66963_67515_+	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides	NA|175aa|down_4|NZ_CP040819.1_67643_68168_+	TIGR00777, AhpD_protein	NA|209aa|down_5|NZ_CP040819.1_68226_68853_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|358aa|down_6|NZ_CP040819.1_68979_70053_+	cd13590, PBP2_PotD_PotF_like, The periplasmic-binding component of ABC transporters involved in uptake of polyamines; possess the type 2 periplasmic binding fold	NA|287aa|down_7|NZ_CP040819.1_70060_70921_+	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|262aa|down_8|NZ_CP040819.1_70920_71706_+	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|359aa|down_9|NZ_CP040819.1_71702_72779_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
GCF_005887635.2_ASM588763v2	NZ_CP040819	Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence	4	564364-564449	4	CRISPRCasFinder	no			Orphan	GGGTGCTCCGCTGCCGGAAGGCG	23	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,DEDDh,csa3	NA,NA	NA|331aa|up_9|NZ_CP040819.1_551951_552944_+	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|487aa|up_8|NZ_CP040819.1_552959_554420_+	cd19101, AKR_unchar, uncharacterized aldo-keto reductase (AKR) superfamily protein	NA|426aa|up_7|NZ_CP040819.1_554932_556210_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|342aa|up_6|NZ_CP040819.1_556218_557244_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|159aa|up_5|NZ_CP040819.1_557556_558033_-	cd01716, Hfq, bacterial Hfq-like	NA|290aa|up_4|NZ_CP040819.1_558877_559747_-	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|262aa|up_3|NZ_CP040819.1_559911_560697_-	COG3622, Hfi, Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]	NA|354aa|up_2|NZ_CP040819.1_560864_561926_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|299aa|up_1|NZ_CP040819.1_561957_562854_+	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|322aa|up_0|NZ_CP040819.1_563228_564194_+	cd13675, PBP2_TRAP_SBP_like_5, Uncharacterized substrate-binding protein of the Tripartite ATP-independent  Periplasmic transporter family; the type 2 periplasmic-binding protein fold	NA|169aa|down_0|NZ_CP040819.1_564724_565231_+	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]	NA|429aa|down_1|NZ_CP040819.1_565230_566517_+	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|493aa|down_2|NZ_CP040819.1_566724_568203_+	cd07109, ALDH_AAS00426, Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like	NA|981aa|down_3|NZ_CP040819.1_568710_571653_+	cd01007, PBP2_BvgS_HisK_like, The type 2 periplasmic ligand-binding protein domain of the sensor-kinase BvgS and histidine kinase receptors, and related proteins	NA|1593aa|down_4|NZ_CP040819.1_571649_576428_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|397aa|down_5|NZ_CP040819.1_576716_577907_+	cd01948, EAL, EAL domain	NA|410aa|down_6|NZ_CP040819.1_578608_579838_-	cd01293, Bact_CD, Bacterial cytosine deaminase and related metal-dependent hydrolases	NA|309aa|down_7|NZ_CP040819.1_581431_582358_+	pfam05035, DGOK, 2-keto-3-deoxy-galactonokinase	NA|212aa|down_8|NZ_CP040819.1_582361_582997_+	PRK09140, PRK09140, 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed	NA|221aa|down_9|NZ_CP040819.1_583655_584318_+	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]
GCF_005887635.2_ASM588763v2	NZ_CP040819	Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence	5	583116-583259	5	CRISPRCasFinder	no			Orphan	CGCGCCCGGGCGGAGGGCCGTGCGCCAGGCATGACAGCCGAAGGCGG	47	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,DEDDh,csa3	NA,NA	NA|322aa|up_9|NZ_CP040819.1_563228_564194_+	cd13675, PBP2_TRAP_SBP_like_5, Uncharacterized substrate-binding protein of the Tripartite ATP-independent  Periplasmic transporter family; the type 2 periplasmic-binding protein fold	NA|169aa|up_8|NZ_CP040819.1_564724_565231_+	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]	NA|429aa|up_7|NZ_CP040819.1_565230_566517_+	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|493aa|up_6|NZ_CP040819.1_566724_568203_+	cd07109, ALDH_AAS00426, Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like	NA|981aa|up_5|NZ_CP040819.1_568710_571653_+	cd01007, PBP2_BvgS_HisK_like, The type 2 periplasmic ligand-binding protein domain of the sensor-kinase BvgS and histidine kinase receptors, and related proteins	NA|1593aa|up_4|NZ_CP040819.1_571649_576428_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|397aa|up_3|NZ_CP040819.1_576716_577907_+	cd01948, EAL, EAL domain	NA|410aa|up_2|NZ_CP040819.1_578608_579838_-	cd01293, Bact_CD, Bacterial cytosine deaminase and related metal-dependent hydrolases	NA|309aa|up_1|NZ_CP040819.1_581431_582358_+	pfam05035, DGOK, 2-keto-3-deoxy-galactonokinase	NA|212aa|up_0|NZ_CP040819.1_582361_582997_+	PRK09140, PRK09140, 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed	NA|221aa|down_0|NZ_CP040819.1_583655_584318_+	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
