The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP040818	Paraoceanicella profunda strain D4M1 chromosome, complete genome	4039866	72896	89984	4039866	terminase,capsid,portal	Acidithiobacillus_phage(23.08%)	21	NA	NA
WP_138579498.1|72896_73385_+	crossover junction endodeoxyribonuclease RuvC	NA	K4ICN3	Acidithiobacillus_phage	64.9	2.4e-50
WP_138579500.1|73390_73585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138579462.1|73577_74012_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138579464.1|74068_75187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138579466.1|75922_77287_+	site-specific DNA-methyltransferase	NA	A0A2H4JGF1	uncultured_Caudovirales_phage	39.6	1.7e-77
WP_138579468.1|77288_78470_+	DNA cytosine methyltransferase	NA	A0A0F7L3T9	uncultured_marine_virus	47.0	1.6e-34
WP_138579470.1|78479_78701_+	hypothetical protein	NA	K4I1E3	Acidithiobacillus_phage	70.4	5.0e-19
WP_143972229.1|78697_79144_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138579474.1|79367_79934_-	DUF3489 domain-containing protein	NA	K4HZZ2	Acidithiobacillus_phage	36.0	1.6e-13
WP_138579476.1|80029_80302_-	hypothetical protein	NA	A0A0K0PVN5	Roseobacter_phage	52.1	9.4e-12
WP_138579478.1|80413_81010_+	hypothetical protein	NA	A0A2H4JCL4	uncultured_Caudovirales_phage	41.7	1.3e-24
WP_138579480.1|80957_82964_+|terminase	phage terminase large subunit family protein	terminase	A0A2H4JIC6	uncultured_Caudovirales_phage	60.5	1.2e-217
WP_170317530.1|82954_83173_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138579484.1|83172_84684_+|portal	phage portal protein	portal	A0A1B2LRR5	Wolbachia_phage	37.9	1.2e-79
WP_138579502.1|84703_86722_+	peptidase U37	NA	A0A2I7QXP2	Vibrio_phage	33.8	4.1e-75
WP_138579486.1|86734_87310_+	HNH endonuclease	NA	A0A2P1JZ90	Mycobacterium_phage	36.0	3.3e-14
WP_138579488.1|87323_87659_+	DUF2190 family protein	NA	NA	NA	NA	NA
WP_138579490.1|87658_87970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138579492.1|87975_88605_+	hypothetical protein	NA	G8DH49	Emiliania_huxleyi_virus	52.9	3.3e-52
WP_138579494.1|88618_88924_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138579496.1|88925_89984_-|capsid	minor capsid protein	capsid	A0A2D2W1Z9	Sinorhizobium_phage	50.8	2.0e-12
>prophage 2
NZ_CP040818	Paraoceanicella profunda strain D4M1 chromosome, complete genome	4039866	176923	206417	4039866	tail,terminase,portal,tRNA,capsid,head,protease	Bacillus_virus(33.33%)	26	NA	NA
WP_170317534.1|176923_178369_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_138577360.1|178373_178850_-	gluconokinase	NA	NA	NA	NA	NA
WP_138577232.1|178872_179631_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_138577230.1|179941_180364_-	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_138577228.1|180515_181550_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_138577226.1|181579_182383_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_138577224.1|182375_183308_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_138577222.1|183307_184420_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	39.0	6.2e-25
WP_138577220.1|184518_185976_-	amidase	NA	NA	NA	NA	NA
WP_138577218.1|185975_186746_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_138577216.1|187059_187851_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.6	2.3e-18
WP_138577214.1|187847_188852_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_138577212.1|189102_190026_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_138577210.1|190497_191331_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_138577208.1|191435_192527_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_170317535.1|192835_193522_+|tRNA	tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD	tRNA	NA	NA	NA	NA
WP_138577358.1|196733_197159_-	response regulator	NA	NA	NA	NA	NA
WP_170317536.1|197166_199398_-	PAS domain S-box protein	NA	A0A1V0SL97	Klosneuvirus	36.4	2.6e-14
WP_170317537.1|199856_200612_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_170317538.1|200608_201142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_170317539.1|201158_202790_+|terminase	terminase	terminase	F1C585	Cronobacter_phage	29.0	6.9e-33
WP_138577196.1|202780_203140_+|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_138577356.1|203139_203487_+	HNH endonuclease	NA	A0A0U4B0J6	Pseudomonas_phage	40.6	2.9e-05
WP_138577194.1|203479_204751_+|capsid	phage major capsid protein	capsid	NA	NA	NA	NA
WP_138577192.1|204750_205335_+|head,protease	HK97 family phage prohead protease	head,protease	A0A1G5SB98	Enterococcus_phage	37.7	7.7e-11
WP_138577190.1|205334_206417_+|portal	phage portal protein	portal	NA	NA	NA	NA
>prophage 3
NZ_CP040818	Paraoceanicella profunda strain D4M1 chromosome, complete genome	4039866	1433069	1502627	4039866	tail,terminase,portal,tRNA,capsid,head	Catovirus(18.18%)	57	NA	NA
WP_138577741.1|1433069_1434164_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	42.7	2.5e-63
WP_138577739.1|1434217_1435150_+	hydroxymethylbilane synthase	NA	NA	NA	NA	NA
WP_138577737.1|1435130_1435874_+	uroporphyrinogen-III synthase	NA	NA	NA	NA	NA
WP_138577735.1|1436000_1437446_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138577733.1|1437465_1438956_+	heme biosynthesis protein HemY	NA	NA	NA	NA	NA
WP_138577731.1|1439752_1440859_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_138577729.1|1441024_1441996_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_138577727.1|1442084_1442570_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_170317765.1|1442578_1442773_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138577725.1|1442862_1444083_-	GTP-binding protein	NA	NA	NA	NA	NA
WP_138577723.1|1444448_1446578_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_138577899.1|1446624_1447473_+	iron-siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_138577721.1|1447469_1449440_+	Fe(3+)-hydroxamate ABC transporter permease FhuB	NA	NA	NA	NA	NA
WP_138577719.1|1449436_1450222_+	ATP-binding cassette domain-containing protein	NA	A0A1V0SBM3	Catovirus	25.8	1.3e-08
WP_138577717.1|1450304_1450628_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138577715.1|1451376_1453776_-	ligase-associated DNA damage response DEXH box helicase	NA	NA	NA	NA	NA
WP_138577713.1|1454050_1455331_+	chromate efflux transporter	NA	A0A219VHC2	Ochrobactrum_phage	56.0	1.8e-15
WP_138577711.1|1455684_1456911_-	argininosuccinate synthase	NA	NA	NA	NA	NA
WP_138577709.1|1457572_1458820_+	threonine ammonia-lyase IlvA	NA	NA	NA	NA	NA
WP_138577706.1|1458981_1459878_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_138577704.1|1460001_1461267_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_138577702.1|1461273_1464408_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_138577700.1|1464473_1465964_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_138577698.1|1465976_1467170_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_138577696.1|1467466_1469176_+	GMC family oxidoreductase	NA	A0A1V0S9J5	Catovirus	44.4	2.9e-05
WP_138577694.1|1469524_1470814_-	MFS transporter	NA	NA	NA	NA	NA
WP_138577692.1|1470991_1471438_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_138577690.1|1471671_1472478_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_138577897.1|1472870_1474091_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_138577895.1|1474723_1475230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138577688.1|1475606_1477313_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_170317611.1|1477444_1478446_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_138577684.1|1478944_1479286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138577682.1|1479468_1479816_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138577680.1|1479817_1480456_-	lysozyme	NA	F8TV87	EBPR_siphovirus	50.3	2.1e-30
WP_138577678.1|1480486_1480798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138577676.1|1480809_1481616_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138577674.1|1481627_1483655_-	hypothetical protein	NA	NA	NA	NA	NA
WP_170317612.1|1483654_1485886_-	hypothetical protein	NA	NA	NA	NA	NA
WP_143972244.1|1485928_1488046_-	hypothetical protein	NA	A0A023MI24	Escherichia_phage	25.5	3.7e-10
WP_138579670.1|1488045_1488435_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138579672.1|1488431_1489013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_143972245.1|1489005_1489734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_170317613.1|1489737_1493052_-|tail	phage tail tape measure protein	tail	A0A0C5AJ16	Paenibacillus_phage	31.8	4.1e-24
WP_138579682.1|1493059_1493239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138579680.1|1493199_1493559_-	gene transfer agent family protein	NA	NA	NA	NA	NA
WP_138579678.1|1493558_1493981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_143972246.1|1493984_1494407_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138572496.1|1494403_1494817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138572494.1|1494813_1495188_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_138572492.1|1495184_1495754_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_138572490.1|1495755_1496094_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138572488.1|1496162_1497470_-|capsid	phage major capsid protein	capsid	Q6UAX6	Klebsiella_phage	37.4	7.2e-49
WP_138572486.1|1497567_1498491_-	S49 family peptidase	NA	G8DH45	Emiliania_huxleyi_virus	30.6	1.1e-08
WP_138572484.1|1498702_1499677_+	calcium/sodium antiporter	NA	NA	NA	NA	NA
WP_138572482.1|1499652_1500960_-|portal	phage portal protein	portal	A0A2K5B287	Erysipelothrix_phage	27.2	6.8e-23
WP_138572480.1|1500956_1502627_-|terminase	terminase	terminase	A0A1W6JP18	Morganella_phage	35.9	1.6e-80
>prophage 4
NZ_CP040818	Paraoceanicella profunda strain D4M1 chromosome, complete genome	4039866	2795399	2815440	4039866	tail,terminase,integrase,portal,head,capsid,protease	Roseobacter_phage(14.29%)	32	2790512:2790529	2813610:2813627
2790512:2790529	attL	CGGTTCGCCTTGCGCTCG	NA	NA	NA	NA
WP_138579630.1|2795399_2796404_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_170317773.1|2796717_2797002_-	nucleotide pyrophosphohydrolase	NA	A0A1B0UYW1	Roseobacter_phage	42.9	2.9e-11
WP_138579624.1|2797049_2797295_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138579622.1|2797291_2797687_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138579620.1|2797683_2799540_-	DNA cytosine methyltransferase	NA	A0A1X9HVK8	Ruegeria_phage	44.8	1.6e-147
WP_138579618.1|2799536_2799734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_170317682.1|2799730_2799895_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138579616.1|2800005_2800953_-	DUF2303 family protein	NA	A0A291AUR3	Sinorhizobium_phage	32.0	1.8e-33
WP_138579614.1|2800966_2801335_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138579612.1|2801389_2801575_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138579610.1|2801571_2802150_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138579608.1|2802149_2802404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138579606.1|2802400_2802595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138579604.1|2802859_2803438_-	hypothetical protein	NA	NA	NA	NA	NA
WP_143972280.1|2803434_2803980_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_138579600.1|2804141_2804387_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_138579598.1|2804520_2805024_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138579596.1|2805020_2805464_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138579594.1|2805456_2805675_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138579592.1|2805671_2806094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138579590.1|2806086_2806716_+	DUF1376 domain-containing protein	NA	NA	NA	NA	NA
WP_143972259.1|2806847_2807468_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138579652.1|2807485_2808181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138579650.1|2808207_2808804_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138579648.1|2808915_2809284_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_138579646.1|2809376_2809832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138579644.1|2809831_2811547_+|terminase	terminase large subunit	terminase	I3ULZ6	Rhodobacter_phage	48.2	7.3e-134
WP_138579642.1|2811546_2812725_+|portal	phage portal protein	portal	B0VK31	Azospirillum_phage	38.8	2.5e-56
WP_138579640.1|2812726_2813380_+|head,protease	HK97 family phage prohead protease	head,protease	A0A0R6PIR7	Moraxella_phage	39.5	4.7e-25
WP_170317683.1|2813385_2814603_+|capsid	phage major capsid protein	capsid	A0A2H4JD98	uncultured_Caudovirales_phage	46.6	1.6e-74
2813610:2813627	attR	CGAGCGCAAGGCGAACCG	NA	NA	NA	NA
WP_170317684.1|2814616_2814784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138579636.1|2814783_2815440_+|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
>prophage 5
NZ_CP040818	Paraoceanicella profunda strain D4M1 chromosome, complete genome	4039866	3496339	3513621	4039866	tail,tRNA,capsid,head,protease	Rhodobacter_phage(30.0%)	18	NA	NA
WP_138575032.1|3496339_3497695_-|tRNA	glutamate--tRNA ligase	tRNA	A0A1V0SFT2	Hokovirus	35.6	1.5e-09
WP_138575034.1|3497799_3498219_+	metallopeptidase family protein	NA	NA	NA	NA	NA
WP_138575433.1|3498271_3499747_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_138575036.1|3499994_3501653_+	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	39.5	1.0e-100
WP_138575038.1|3501920_3502634_-	DUF2793 domain-containing protein	NA	A0A0K1LM54	Rhodobacter_phage	44.6	6.3e-23
WP_138575040.1|3502626_3506574_-	glycoside hydrolase TIM-barrel-like domain-containing protein	NA	A0A0K1Y6G6	Rhodobacter_phage	41.5	3.5e-248
WP_138575042.1|3506586_3507033_-	peptidase	NA	F4YXU4	Roseobacter_phage	49.7	1.0e-31
WP_138575043.1|3507007_3507898_-	DUF2163 domain-containing protein	NA	A0A0B5A5B8	Paracoccus_phage	40.3	2.6e-58
WP_138575045.1|3507899_3508523_-	DUF2460 domain-containing protein	NA	A0A0K1LLZ8	Rhodobacter_phage	50.9	1.5e-49
WP_138575047.1|3508538_3509171_-|tail	phage tail tape measure protein	tail	C0LP53	Escherichia_virus	36.8	6.9e-13
WP_138575049.1|3509163_3509376_-|tail	phage tail assembly chaperone	tail	NA	NA	NA	NA
WP_138575051.1|3509368_3509692_-	gene transfer agent family protein	NA	NA	NA	NA	NA
WP_138575053.1|3509691_3510105_-|tail	phage major tail protein, TP901-1 family	tail	NA	NA	NA	NA
WP_138575055.1|3510214_3510637_-	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_138575057.1|3510633_3510984_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_138575435.1|3510980_3511562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138575059.1|3511766_3512966_-|capsid	phage major capsid protein	capsid	B0VK33	Azospirillum_phage	41.6	3.1e-62
WP_138575061.1|3513069_3513621_-|head,protease	HK97 family phage prohead protease	head,protease	A0A0U2BX10	Paracoccus_phage	49.1	5.7e-32
