assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_005885935.1_ASM588593v1	NZ_CP040568	Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-8290 chromosome, complete genome	1	599297-599397	1	CRISPRCasFinder	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	Orphan	GCTTCAGTGGCGAACGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT,cas14j	NA,NA|177aa|down_1|NZ_CP040568.1_600915_601446_-	NA|448aa|up_9|NZ_CP040568.1_585375_586719_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_CP040568.1_587346_587799_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_CP040568.1_587826_589329_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_CP040568.1_589353_592032_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_CP040568.1_592252_592654_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP040568.1_592653_593598_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP040568.1_593748_594018_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP040568.1_594259_596395_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP040568.1_596504_597389_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP040568.1_597494_597575_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_CP040568.1_599610_600855_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|177aa|down_1|NZ_CP040568.1_600915_601446_-	NA	NA|240aa|down_2|NZ_CP040568.1_601604_602324_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|336aa|down_3|NZ_CP040568.1_602301_603309_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|down_4|NZ_CP040568.1_603486_604383_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_5|NZ_CP040568.1_604373_605369_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_6|NZ_CP040568.1_605585_606110_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_7|NZ_CP040568.1_606103_606607_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_8|NZ_CP040568.1_606593_606911_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_9|NZ_CP040568.1_606948_607392_+	PRK03467, PRK03467, hypothetical protein; Provisional
GCF_005885935.1_ASM588593v1	NZ_CP040568	Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-8290 chromosome, complete genome	2	948675-950289	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	25,26,26	26	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT,cas14j	NA,NA	NA|381aa|up_9|NZ_CP040568.1_934473_935616_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_8|NZ_CP040568.1_935659_938416_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_7|NZ_CP040568.1_938473_939769_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|NZ_CP040568.1_939820_942055_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_5|NZ_CP040568.1_942138_942495_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_4|NZ_CP040568.1_942460_942757_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|267aa|up_3|NZ_CP040568.1_943524_944325_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP040568.1_944552_946190_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP040568.1_946272_947571_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP040568.1_947706_948378_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP040568.1_950386_951184_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP040568.1_951271_951634_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP040568.1_952057_953857_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP040568.1_953856_955569_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP040568.1_955644_956379_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP040568.1_956466_957420_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_6|NZ_CP040568.1_957864_960528_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|down_7|NZ_CP040568.1_960539_962096_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|down_8|NZ_CP040568.1_962092_962653_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|down_9|NZ_CP040568.1_962666_963725_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI
GCF_005885935.1_ASM588593v1	NZ_CP040568	Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-8290 chromosome, complete genome	3	966421-967059	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	9,10,10	10	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT,cas14j	NA,NA	NA|245aa|up_9|NZ_CP040568.1_955644_956379_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP040568.1_956466_957420_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_7|NZ_CP040568.1_957864_960528_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_6|NZ_CP040568.1_960539_962096_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|up_5|NZ_CP040568.1_962092_962653_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|NZ_CP040568.1_962666_963725_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP040568.1_963735_964482_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP040568.1_964463_965114_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP040568.1_965110_966031_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP040568.1_966030_966324_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP040568.1_967073_968120_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP040568.1_968370_969279_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP040568.1_969288_970728_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP040568.1_970714_971320_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_CP040568.1_971337_971694_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP040568.1_971884_972196_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP040568.1_972214_972925_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP040568.1_972924_973404_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP040568.1_973400_974450_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP040568.1_974430_975192_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_005885935.1_ASM588593v1	NZ_CP040568	Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-8290 chromosome, complete genome	4	1157976-1158085	4	CRISPRCasFinder	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	Orphan	TGTCCCACCCTGTACCACTTTTTTTTAA	28	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT,cas14j	NA,NA|276aa|down_2|NZ_CP040568.1_1160873_1161701_+,NA|198aa|down_4|NZ_CP040568.1_1163618_1164212_-,NA|68aa|down_9|NZ_CP040568.1_1167553_1167757_+	NA|281aa|up_9|NZ_CP040568.1_1147923_1148766_+	pfam06560, GPI, Glucose-6-phosphate isomerase (GPI)	NA|188aa|up_8|NZ_CP040568.1_1148765_1149329_+	TIGR03127, RuMP_HxlB, 6-phospho 3-hexuloisomerase	NA|212aa|up_7|NZ_CP040568.1_1149352_1149988_+	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase	NA|338aa|up_6|NZ_CP040568.1_1151557_1152571_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|327aa|up_5|NZ_CP040568.1_1152581_1153562_-	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism]	NA|125aa|up_4|NZ_CP040568.1_1153558_1153933_-	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism]	NA|174aa|up_3|NZ_CP040568.1_1153929_1154451_-	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism]	NA|95aa|up_2|NZ_CP040568.1_1154563_1154848_-	COG3423, Nlp, Predicted transcriptional regulator [Transcription]	NA|119aa|up_1|NZ_CP040568.1_1154942_1155299_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|273aa|up_0|NZ_CP040568.1_1155452_1156271_-	pfam14491, DUF4435, Protein of unknown function (DUF4435)	NA|690aa|down_0|NZ_CP040568.1_1158102_1160172_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|72aa|down_1|NZ_CP040568.1_1160207_1160423_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|276aa|down_2|NZ_CP040568.1_1160873_1161701_+	NA	NA|398aa|down_3|NZ_CP040568.1_1162035_1163229_-	pfam02810, SEC-C, SEC-C motif	NA|198aa|down_4|NZ_CP040568.1_1163618_1164212_-	NA	NA|56aa|down_5|NZ_CP040568.1_1164258_1164426_-	PRK09692, PRK09692, integrase; Provisional	NA|355aa|down_6|NZ_CP040568.1_1164439_1165504_-	PRK09692, PRK09692, integrase; Provisional	NA|337aa|down_7|NZ_CP040568.1_1165831_1166842_-	PHA02601, int, integrase; Provisional	NA|189aa|down_8|NZ_CP040568.1_1166841_1167408_-	pfam07022, Phage_CI_repr, Bacteriophage CI repressor helix-turn-helix domain	NA|68aa|down_9|NZ_CP040568.1_1167553_1167757_+	NA
