The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP040527	Enterobacter ludwigii strain JP9 isolate Tobacco rhizosphere soil chromosome, complete genome	4681542	1646331	1697821	4681542	protease,plate	Bacillus_phage(25.0%)	43	NA	NA
WP_138013696.1|1646331_1648092_-|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_014169429.1|1648278_1648731_+	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_020884794.1|1648800_1649856_-	porin OmpA	NA	NA	NA	NA	NA
WP_078774793.1|1650210_1650720_-	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_032677817.1|1650937_1651564_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_020884791.1|1651520_1653683_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_025204535.1|1653702_1654149_-	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_138013697.1|1654272_1656327_+	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.3	2.3e-17
WP_020884788.1|1656386_1656845_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_032679662.1|1656925_1657588_-	DUF2057 family protein	NA	NA	NA	NA	NA
WP_025204532.1|1657760_1658177_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_013097248.1|1658211_1658529_-	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_032677819.1|1658589_1659780_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_138013698.1|1659955_1660513_+	kinase inhibitor	NA	NA	NA	NA	NA
WP_081146620.1|1660523_1661312_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_020884783.1|1661323_1661605_+	acylphosphatase	NA	NA	NA	NA	NA
WP_020884782.1|1661601_1661931_-	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_014169445.1|1662019_1662679_-|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	53.9	2.9e-46
WP_068794471.1|1662948_1664577_+	oligopeptide ABC transporter substrate-binding protein OppA	NA	NA	NA	NA	NA
WP_138013699.1|1665139_1665409_-	methyltransferase	NA	NA	NA	NA	NA
WP_025204527.1|1666119_1666620_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_032670568.1|1666653_1668201_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_138013700.1|1668214_1669564_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_138013701.1|1669560_1670250_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
WP_138013702.1|1670249_1671929_+	OmpA family protein	NA	NA	NA	NA	NA
WP_025204522.1|1671931_1672423_+	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_138013703.1|1672585_1675258_+	type VI secretion system ATPase TssH	NA	K4FB40	Cronobacter_phage	32.5	1.2e-93
WP_138013704.1|1675254_1677612_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA	NA
WP_020884771.1|1677621_1678161_+	DUF3828 domain-containing protein	NA	NA	NA	NA	NA
WP_020884770.1|1678243_1678714_+	DUF3828 domain-containing protein	NA	NA	NA	NA	NA
WP_138013705.1|1681514_1682093_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138013706.1|1682229_1682718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063925123.1|1682720_1682984_+	PAAR domain-containing protein	NA	R9U4D0	Rhizobium_phage	50.0	1.2e-06
WP_050736598.1|1682986_1684195_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138013707.1|1684187_1687559_+	type VI secretion protein VasK	NA	NA	NA	NA	NA
WP_047955326.1|1687959_1689567_+	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_138013708.1|1689600_1691370_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_138278251.1|1691333_1692416_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_063156171.1|1692451_1692976_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_047955330.1|1692980_1695452_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA	NA
WP_047955331.1|1695452_1696337_+	glycine zipper family protein	NA	NA	NA	NA	NA
WP_047955332.1|1696326_1696881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014169450.1|1697371_1697821_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
>prophage 2
NZ_CP040527	Enterobacter ludwigii strain JP9 isolate Tobacco rhizosphere soil chromosome, complete genome	4681542	3006954	3013227	4681542		Enterobacteria_phage(50.0%)	6	NA	NA
WP_138014015.1|3006954_3007491_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	57.9	2.7e-50
WP_138014016.1|3007494_3008373_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.1	1.9e-106
WP_047955854.1|3008424_3009324_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.1	3.9e-30
WP_047955855.1|3009323_3010409_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.6	3.3e-100
WP_020883269.1|3010760_3011657_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	41.9	1.2e-42
WP_138014017.1|3011835_3013227_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	31.9	3.7e-19
>prophage 3
NZ_CP040527	Enterobacter ludwigii strain JP9 isolate Tobacco rhizosphere soil chromosome, complete genome	4681542	3956039	4021639	4681542	plate,tail,tRNA,holin	Erwinia_phage(28.57%)	66	NA	NA
WP_138014163.1|3956039_3957053_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	58.6	4.8e-109
WP_001144069.1|3957289_3957505_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_025202985.1|3957619_3959365_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.5	2.1e-75
WP_020883616.1|3959515_3961363_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.7	8.4e-35
WP_025202984.1|3961446_3961953_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA	NA
WP_138014164.1|3962294_3962681_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138014165.1|3962958_3963582_-	DUF4760 domain-containing protein	NA	Q8HA56	Vibrio_phage	38.7	3.6e-22
WP_138014166.1|3965962_3966517_-	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	71.4	9.8e-64
WP_138014167.1|3967404_3967950_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032678990.1|3968189_3968390_-	ogr/Delta-like zinc finger family protein	NA	A0A2I8TV89	Erwinia_phage	76.8	6.3e-21
WP_138014168.1|3968457_3969612_-	phage late control D family protein	NA	A0A0M5M5V5	Salmonella_phage	61.1	2.1e-129
WP_014171677.1|3969608_3970073_-|tail	phage tail protein	tail	O80317	Escherichia_phage	67.9	2.8e-56
WP_138014169.1|3970084_3972532_-|tail	phage tail tape measure protein	tail	Q37848	Escherichia_phage	47.3	1.3e-147
WP_014171679.1|3972524_3972644_-|tail	GpE family phage tail protein	tail	O80316	Escherichia_phage	87.2	2.8e-13
WP_014171681.1|3973042_3973561_-|tail	phage major tail tube protein	tail	A0A218M4J0	Erwinia_phage	80.2	5.9e-79
WP_025202978.1|3973572_3974760_-|tail	phage tail sheath protein	tail	A0A0F7LBW9	Escherichia_phage	81.8	8.8e-187
WP_049023877.1|3975074_3975506_-|tail	tail fiber assembly protein	tail	B6SCW7	Bacteriophage	40.0	8.2e-18
WP_121339847.1|3975507_3977706_-|tail	phage tail protein	tail	U5N099	Enterobacteria_phage	81.4	3.0e-92
WP_032678995.1|3977717_3978248_-|tail	phage tail protein I	tail	Q37841	Escherichia_phage	88.1	3.6e-92
WP_138014170.1|3978240_3979149_-|plate	baseplate assembly protein	plate	A0A0F7LCQ9	Escherichia_phage	79.1	4.9e-129
WP_014171687.1|3979154_3979505_-	GPW/gp25 family protein	NA	A0A0M4RE59	Salmonella_phage	69.8	1.5e-38
WP_020883605.1|3979501_3980143_-|plate	phage baseplate assembly protein V	plate	A0A0M4S6F6	Salmonella_phage	78.4	2.4e-90
WP_138014171.1|3980252_3980720_-|tail	phage tail protein	tail	A0A218M4K6	Erwinia_phage	58.8	3.1e-47
WP_072126476.1|3980682_3980928_-|holin	holin	holin	S4TNY4	Salmonella_phage	74.7	1.1e-27
WP_025202971.1|3980827_3981241_-	protein lysB	NA	O80310	Escherichia_phage	56.9	5.6e-32
WP_047956126.1|3981237_3981747_-	lysozyme	NA	A0A218M4K3	Erwinia_phage	82.1	2.3e-75
WP_014171693.1|3981730_3981952_-	primosomal protein	NA	A0A218M4L5	Erwinia_phage	76.4	9.3e-26
WP_020883600.1|3981942_3982146_-|tail	tail protein X	tail	A0A218M4L8	Erwinia_phage	74.6	1.8e-23
WP_020883599.1|3982269_3982710_-	DinI-like family protein	NA	A0A218M4I0	Erwinia_phage	76.6	1.0e-52
WP_138014305.1|3982819_3985015_-	replication endonuclease	NA	A0A218M4H2	Erwinia_phage	74.6	0.0e+00
WP_020883597.1|3985022_3985244_-	TraR/DksA family transcriptional regulator	NA	Q6K1F5	Salmonella_virus	75.0	2.1e-25
WP_040018794.1|3985243_3985471_-	DUF2732 family protein	NA	A0A0M3UL87	Salmonella_phage	61.3	1.9e-13
WP_040018793.1|3985538_3985877_-	DUF5347 domain-containing protein	NA	A0A218M4I7	Erwinia_phage	76.6	1.7e-42
WP_025202968.1|3986164_3986740_+	phage repressor protein CI	NA	A0A218M4J1	Erwinia_phage	64.4	5.2e-68
WP_047956131.1|3987011_3988181_+	DNA repair protein	NA	NA	NA	NA	NA
WP_032680231.1|3988181_3988946_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_044858591.1|3989092_3989587_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_138014172.1|3989583_3991143_-	MCP four helix bundle domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	31.4	7.6e-13
WP_025202964.1|3991478_3992999_-	PAS domain-containing methyl-accepting chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	47.0	4.9e-33
WP_020883590.1|3993435_3994815_+	putrescine aminotransferase	NA	A0A1V0SKB7	Klosneuvirus	27.4	7.6e-33
WP_020883589.1|3994848_3995451_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_138014173.1|3995493_3996180_+	B3/4 domain-containing protein	NA	NA	NA	NA	NA
WP_138014174.1|3996192_3997041_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_020883586.1|3997079_3997373_-	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase	NA	NA	NA	NA	NA
WP_014171710.1|3997369_3998257_-	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA	NA
WP_138014175.1|3998268_3999270_-	autoinducer 2 ABC transporter substrate-binding protein LsrB	NA	NA	NA	NA	NA
WP_014171712.1|3999266_4000250_-	histidine kinase	NA	NA	NA	NA	NA
WP_014171713.1|4000250_4001282_-	autoinducer 2 ABC transporter permease LsrC	NA	NA	NA	NA	NA
WP_138278316.1|4001278_4002766_-	autoinducer 2 ABC transporter ATP-binding protein LsrA	NA	F2Y302	Organic_Lake_phycodnavirus	29.2	2.1e-12
WP_020883581.1|4002981_4003953_+	transcriptional regulator LsrR	NA	NA	NA	NA	NA
WP_020883580.1|4003986_4005567_+	autoinducer-2 kinase	NA	NA	NA	NA	NA
WP_138014176.1|4005727_4007749_+	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA	NA
WP_014171718.1|4007810_4008947_-	23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA	NA	NA	NA	NA
WP_047956138.1|4009032_4009536_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_138014177.1|4009606_4010605_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_025202952.1|4010868_4011837_+	TerC family protein	NA	A0A291LBC5	Escherichia_phage	33.6	5.7e-35
WP_014171722.1|4012072_4013314_+	serine/threonine transporter SstT	NA	NA	NA	NA	NA
WP_014171723.1|4013416_4014904_-	altronate dehydratase	NA	NA	NA	NA	NA
WP_014171724.1|4014921_4016334_-	glucuronate isomerase	NA	NA	NA	NA	NA
WP_138278318.1|4016807_4018106_+	MFS transporter	NA	NA	NA	NA	NA
WP_014171726.1|4018223_4019000_+	transcriptional regulator ExuR	NA	NA	NA	NA	NA
WP_014171727.1|4019343_4020006_+	DedA family protein	NA	NA	NA	NA	NA
WP_020883575.1|4020008_4020392_+	EnvZ/OmpR regulon moderator MzrA	NA	NA	NA	NA	NA
WP_014171729.1|4020535_4020904_+	DUF1090 domain-containing protein	NA	NA	NA	NA	NA
WP_003862645.1|4020933_4021239_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_013098867.1|4021240_4021639_+|holin	phage holin family protein	holin	NA	NA	NA	NA
