assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_005844045.1_ASM584404v1	NZ_CP040464	Campylobacter hyointestinalis subsp. hyointestinalis strain S12 chromosome, complete genome	1	99674-99793	1	CRISPRCasFinder	no		csa3,cas9,cas1,cas2,cas3,WYL,DEDDh,cas4,cas5,cas7,cas8b1,c2c9_V-U4	Orphan	TTTAGATTTAGTTCTTTAGTACGAATTTATTCGTA	35	0	0	NA	NA	NA	1	1	Orphan	csa3,cas9,cas1,cas2,cas3,WYL,DEDDh,cas4,cas5,cas7,cas8b1,c2c9_V-U4	NA,NA|184aa|down_8|NZ_CP040464.1_103592_104144_+	NA|78aa|up_9|NZ_CP040464.1_94252_94486_+	PRK12281, rplX, 50S ribosomal protein L24; Reviewed	NA|181aa|up_8|NZ_CP040464.1_94488_95031_+	PRK00010, rplE, 50S ribosomal protein L5; Validated	NA|62aa|up_7|NZ_CP040464.1_95032_95218_+	PRK08061, rpsN, type Z 30S ribosomal protein S14	NA|132aa|up_6|NZ_CP040464.1_95228_95624_+	PRK00136, rpsH, 30S ribosomal protein S8; Validated	NA|179aa|up_5|NZ_CP040464.1_95735_96272_+	PRK05498, rplF, 50S ribosomal protein L6; Validated	NA|119aa|up_4|NZ_CP040464.1_96281_96638_+	PRK05593, rplR, 50S ribosomal protein L18; Reviewed	NA|148aa|up_3|NZ_CP040464.1_96652_97096_+	PRK00550, rpsE, 30S ribosomal protein S5; Validated	NA|134aa|up_2|NZ_CP040464.1_97105_97507_+	PRK05592, rplO, 50S ribosomal protein L15; Reviewed	NA|421aa|up_1|NZ_CP040464.1_97506_98769_+	PRK09204, secY, preprotein translocase subunit SecY; Reviewed	NA|253aa|up_0|NZ_CP040464.1_98771_99530_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|73aa|down_0|NZ_CP040464.1_99828_100047_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|38aa|down_1|NZ_CP040464.1_100206_100320_+	PRK00465, rpmJ, 50S ribosomal protein L36; Reviewed	NA|123aa|down_2|NZ_CP040464.1_100323_100692_+	PRK05179, rpsM, 30S ribosomal protein S13; Validated	NA|131aa|down_3|NZ_CP040464.1_100701_101094_+	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|209aa|down_4|NZ_CP040464.1_101121_101748_+	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|333aa|down_5|NZ_CP040464.1_101760_102759_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|119aa|down_6|NZ_CP040464.1_102779_103136_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|89aa|down_7|NZ_CP040464.1_103336_103603_+	pfam01106, NifU, NifU-like domain	NA|184aa|down_8|NZ_CP040464.1_103592_104144_+	NA	NA|435aa|down_9|NZ_CP040464.1_104127_105432_+	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
GCF_005844045.1_ASM584404v1	NZ_CP040464	Campylobacter hyointestinalis subsp. hyointestinalis strain S12 chromosome, complete genome	2	1171550-1173149	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas7,cas8b1	csa3,cas9,cas1,cas2,cas3,WYL,DEDDh,cas4,cas5,cas7,cas8b1,c2c9_V-U4	Type I-B	GTTTCAAATCCTAAAAGGATAAATTTATAC,GTTTCAAATCCTAAAAGGATAAATTTATAC,GTTTCAAATCCTAAAAGGATAAATTTATAC	30,30,30	0	0	NA	NA	NA:NA:NA	24,24,24	24	TypeI-B	csa3,cas9,cas1,cas2,cas3,WYL,DEDDh,cas4,cas5,cas7,cas8b1,c2c9_V-U4	NA|68aa|up_0|NZ_CP040464.1_1170884_1171088_-,NA|186aa|down_5|NZ_CP040464.1_1179444_1180002_-	NA|147aa|up_9|NZ_CP040464.1_1155565_1156006_-	pfam12836, HHH_3, Helix-hairpin-helix motif	NA|423aa|up_8|NZ_CP040464.1_1163359_1164628_-	pfam06097, DUF945, Bacterial protein of unknown function (DUF945)	NA|188aa|up_7|NZ_CP040464.1_1164632_1165196_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|198aa|up_6|NZ_CP040464.1_1165204_1165798_-	cd11524, SYLF, The SYLF domain (also called DUF500), a novel lipid-binding module	NA|518aa|up_5|NZ_CP040464.1_1165807_1167361_-	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|210aa|up_4|NZ_CP040464.1_1167293_1167923_-	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase	NA|182aa|up_3|NZ_CP040464.1_1167973_1168519_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|295aa|up_2|NZ_CP040464.1_1168518_1169403_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|448aa|up_1|NZ_CP040464.1_1169389_1170733_+	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|68aa|up_0|NZ_CP040464.1_1170884_1171088_-	NA	NA|365aa|down_0|NZ_CP040464.1_1173421_1174516_-	pfam09626, DHC, Dihaem cytochrome c	NA|172aa|down_1|NZ_CP040464.1_1174508_1175024_-	pfam09626, DHC, Dihaem cytochrome c	NA|138aa|down_2|NZ_CP040464.1_1175033_1175447_-	pfam09086, DUF1924, Domain of unknown function (DUF1924)	NA|81aa|down_3|NZ_CP040464.1_1176203_1176446_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|284aa|down_4|NZ_CP040464.1_1176432_1177284_+	pfam13481, AAA_25, AAA domain	NA|186aa|down_5|NZ_CP040464.1_1179444_1180002_-	NA	NA|139aa|down_6|NZ_CP040464.1_1183344_1183761_-	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	NA|265aa|down_7|NZ_CP040464.1_1183846_1184641_+	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|105aa|down_8|NZ_CP040464.1_1184624_1184939_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|336aa|down_9|NZ_CP040464.1_1184941_1185949_+	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB
GCF_005844045.1_ASM584404v1	NZ_CP040464	Campylobacter hyointestinalis subsp. hyointestinalis strain S12 chromosome, complete genome	3	1190837-1193694	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas9,cas1,cas2,cas3,WYL,DEDDh,cas4,cas5,cas7,cas8b1,c2c9_V-U4	Orphan	GTTTCAAATCCTAAAAGGATAAATTTATAC,GTTTCAAATCCTAAAAGGATAAATTTATAC,GTTTCAAATCCTAAAAGGATAAATTTATAC	30,30,30	1	1	1193564-1193598	NZ_CP040464.1_289545-289579	NA:NA:NA	43,43,43	43	Orphan	csa3,cas9,cas1,cas2,cas3,WYL,DEDDh,cas4,cas5,cas7,cas8b1,c2c9_V-U4	NA,NA|70aa|down_1|NZ_CP040464.1_1194615_1194825_-,NA|71aa|down_3|NZ_CP040464.1_1196467_1196680_-	NA|139aa|up_9|NZ_CP040464.1_1183344_1183761_-	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	NA|265aa|up_8|NZ_CP040464.1_1183846_1184641_+	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|105aa|up_7|NZ_CP040464.1_1184624_1184939_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|336aa|up_6|NZ_CP040464.1_1184941_1185949_+	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|362aa|up_5|NZ_CP040464.1_1185941_1187027_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|359aa|up_4|NZ_CP040464.1_1187026_1188103_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|232aa|up_3|NZ_CP040464.1_1188144_1188840_+	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|301aa|up_2|NZ_CP040464.1_1188829_1189732_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|192aa|up_1|NZ_CP040464.1_1189728_1190304_+	COG3218, COG3218, ABC-type uncharacterized transport system, auxiliary component [General function prediction only]	NA|135aa|up_0|NZ_CP040464.1_1190280_1190685_-	PRK00016, PRK00016, metal-binding heat shock protein; Provisional	NA|121aa|down_0|NZ_CP040464.1_1193966_1194329_-	pfam09626, DHC, Dihaem cytochrome c	NA|70aa|down_1|NZ_CP040464.1_1194615_1194825_-	NA	NA|135aa|down_2|NZ_CP040464.1_1195377_1195782_+	PRK00016, PRK00016, metal-binding heat shock protein; Provisional	NA|71aa|down_3|NZ_CP040464.1_1196467_1196680_-	NA	NA|505aa|down_4|NZ_CP040464.1_1197118_1198633_-	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|240aa|down_5|NZ_CP040464.1_1198741_1199461_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|243aa|down_6|NZ_CP040464.1_1199453_1200182_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|243aa|down_7|NZ_CP040464.1_1200196_1200925_+	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold	NA|242aa|down_8|NZ_CP040464.1_1200952_1201678_+	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold	NA|203aa|down_9|NZ_CP040464.1_1201715_1202324_+	cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI
