The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP040460	Pseudomonas stutzeri strain PheN2 chromosome, complete genome	3936412	500687	534366	3936412	capsid,holin,portal,integrase,head	Pseudomonas_phage(33.33%)	48	499020:499035	507933:507948
499020:499035	attL	TCTCCAGCTGCTCGGC	NA	NA	NA	NA
WP_138299509.1|500687_501851_+|integrase	site-specific integrase	integrase	L7TP61	Pseudomonas_virus	70.1	1.4e-149
WP_043296234.1|501821_502100_-	Pyocin activator protein PrtN	NA	A0A2K8HN48	Pseudomonas_phage	70.2	6.0e-30
WP_138299510.1|502099_502399_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138299511.1|502613_504206_-	DNA cytosine methyltransferase	NA	A0A1I9KFD6	Aeromonas_phage	53.3	7.7e-138
WP_138299512.1|504328_504835_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138299513.1|504876_505476_-	phosphohydrolase	NA	A0A1W6JP41	Morganella_phage	48.6	3.1e-31
WP_138299514.1|505472_505958_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138299515.1|506011_506824_-	DUF2303 family protein	NA	A0A2R2Z323	Escherichia_phage	42.9	3.1e-50
WP_138299516.1|506865_507213_-	hypothetical protein	NA	A0A2D1GMS3	Marinobacter_phage	42.5	4.9e-13
WP_138299517.1|507251_507512_-	transcriptional regulator	NA	A0A2H4J8B4	uncultured_Caudovirales_phage	48.8	1.9e-14
WP_138299518.1|507508_507904_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138299519.1|507900_508176_-	hypothetical protein	NA	NA	NA	NA	NA
507933:507948	attR	TCTCCAGCTGCTCGGC	NA	NA	NA	NA
WP_138299520.1|508187_508631_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081973318.1|508627_508825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138299521.1|508879_509167_-	DUF1654 domain-containing protein	NA	A0A0H5ARP1	Pseudomonas_phage	65.3	2.0e-20
WP_138299522.1|509323_510091_-	DUF1828 domain-containing protein	NA	A0A2H4JC42	uncultured_Caudovirales_phage	61.6	3.3e-94
WP_138301078.1|510090_510537_-	hypothetical protein	NA	A0A2H4J8G2	uncultured_Caudovirales_phage	56.6	8.4e-42
WP_138299523.1|510602_511427_-	LexA family transcriptional regulator	NA	A0A0H5BBV1	Pseudomonas_phage	56.1	1.1e-58
WP_138299524.1|511378_511618_+	helix-turn-helix domain-containing protein	NA	A0A2H4J0V8	uncultured_Caudovirales_phage	55.7	3.4e-13
WP_138299525.1|511957_512443_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043296263.1|512435_512657_+	hypothetical protein	NA	H2BDI2	Pseudomonas_virus	54.4	5.1e-08
WP_138299526.1|512676_513000_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138299527.1|513025_513256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138299528.1|513286_516007_+	hypothetical protein	NA	A0A2H4JF22	uncultured_Caudovirales_phage	73.6	3.2e-232
WP_138299529.1|516003_516336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138299530.1|516332_516905_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043296268.1|517183_517534_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138299531.1|517526_517874_+|holin	phage holin family protein	holin	Q9MC42	Pseudomonas_phage	41.4	6.9e-07
WP_052078996.1|518002_518512_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081973320.1|518435_520469_+	hypothetical protein	NA	A0A2D1GMT1	Marinobacter_phage	48.2	3.7e-169
WP_043296270.1|520468_520678_+	hypothetical protein	NA	K7PM10	Enterobacteria_phage	50.0	8.9e-10
WP_043296271.1|520674_522255_+|portal	phage portal protein	portal	A0A2D1GMV5	Marinobacter_phage	62.9	2.2e-185
WP_043296273.1|522263_523583_+	S49 family peptidase	NA	A0A2D1GN02	Marinobacter_phage	48.4	3.3e-94
WP_138299532.1|523582_523933_+|head	head decoration protein	head	NA	NA	NA	NA
WP_138299533.1|523992_524445_+	hypothetical protein	NA	Q6UYI3	Burkholderia_phage	42.5	6.2e-24
WP_138299534.1|524378_525017_+|capsid	major capsid protein E	capsid	A0A2I6TCE5	Escherichia_phage	43.2	3.6e-38
WP_138299535.1|525069_525282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138299536.1|525284_525620_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138299537.1|525508_526192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138299538.1|526188_526653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138299539.1|526657_526846_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138299540.1|526838_527579_+	hypothetical protein	NA	A0A0M4U7A4	Ralstonia_phage	24.4	5.4e-09
WP_138299541.1|527758_528241_-	hypothetical protein	NA	A0A127KNL4	Pseudomonas_phage	50.0	4.5e-33
WP_138299542.1|528320_528770_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138299543.1|528955_529255_+	hypothetical protein	NA	A0A1W6JT80	Pseudomonas_phage	53.6	4.4e-18
WP_138299544.1|529358_532085_+	tape measure protein	NA	A0A1B0YZV6	Pseudomonas_phage	26.0	5.2e-49
WP_138299545.1|532174_532687_+	hypothetical protein	NA	A0A0U4IIK1	Pseudomonas_phage	48.8	6.1e-36
WP_138299546.1|532686_534366_+	hypothetical protein	NA	A0A1W6JTA3	Pseudomonas_phage	47.6	5.5e-142
>prophage 2
NZ_CP040460	Pseudomonas stutzeri strain PheN2 chromosome, complete genome	3936412	539389	548145	3936412	integrase	Pseudomonas_phage(25.0%)	11	542433:542447	553062:553076
WP_138299552.1|539389_540022_+	glycoside hydrolase family 19 protein	NA	A0A125RNP1	Pseudomonas_phage	70.7	3.8e-80
WP_138299553.1|539991_540570_+	hypothetical protein	NA	A0A0M4RD57	Salmonella_phage	40.9	1.5e-06
WP_043296311.1|540603_540873_+	hypothetical protein	NA	A0A0U4JX18	Pseudomonas_phage	49.4	8.2e-16
WP_138299554.1|541155_541953_+	DNA adenine methylase	NA	Q8W6S4	Burkholderia_virus	67.7	1.5e-102
WP_138299555.1|542155_542482_-	hypothetical protein	NA	NA	NA	NA	NA
542433:542447	attL	GGCCGGTGAGTTGTT	NA	NA	NA	NA
WP_138299556.1|542595_543303_-	hypothetical protein	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	46.8	2.6e-53
WP_138299557.1|543403_543829_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	47.5	6.4e-23
WP_138299558.1|543816_545073_+	translesion error-prone DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	50.0	2.6e-112
WP_138299559.1|545189_545636_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138299560.1|546099_546477_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138299561.1|547029_548145_+|integrase	site-specific integrase	integrase	L7TP61	Pseudomonas_virus	61.3	2.0e-124
553062:553076	attR	AACAACTCACCGGCC	NA	NA	NA	NA
>prophage 3
NZ_CP040460	Pseudomonas stutzeri strain PheN2 chromosome, complete genome	3936412	917537	928569	3936412	tRNA	uncultured_Caudovirales_phage(55.56%)	12	NA	NA
WP_054094841.1|917537_919895_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	52.2	1.9e-87
WP_043299067.1|919912_920539_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_043299065.1|920598_921924_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	40.4	6.1e-80
WP_138299733.1|921920_922295_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	36.0	2.5e-07
WP_138299734.1|922366_923647_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	55.1	3.6e-101
WP_077682441.1|923791_925180_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_008570805.1|925443_926112_+	Bax inhibitor-1/YccA family protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	77.1	9.0e-88
WP_043299058.1|926203_926596_+	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	76.0	1.9e-50
WP_138299735.1|926595_926955_+	sulfurtransferase complex subunit TusC	NA	A0A2H4J8C0	uncultured_Caudovirales_phage	64.2	3.3e-36
WP_138299736.1|926954_927257_+	sulfurtransferase complex subunit TusB	NA	NA	NA	NA	NA
WP_043299054.1|927253_927589_+	TusE/DsrC/DsvC family sulfur relay protein	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	72.1	2.0e-40
WP_138299737.1|927585_928569_+	glycosyl transferase family protein	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	75.5	4.6e-141
>prophage 4
NZ_CP040460	Pseudomonas stutzeri strain PheN2 chromosome, complete genome	3936412	3026096	3040786	3936412		Bacillus_phage(70.0%)	10	NA	NA
WP_043295128.1|3026096_3026978_+	N-carbamoylputrescine amidase	NA	A7IVZ1	Paramecium_bursaria_Chlorella_virus	48.8	3.8e-78
WP_138300664.1|3027071_3028169_+	agmatine deiminase	NA	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	53.2	2.8e-110
WP_043295125.1|3028191_3029190_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	33.5	2.8e-16
WP_138301140.1|3029601_3032601_+	PAS domain S-box protein	NA	A0A1V0SGX0	Hokovirus	29.0	7.0e-23
WP_043295124.1|3032597_3032984_+	response regulator	NA	W8CYM9	Bacillus_phage	34.2	1.1e-10
WP_138300665.1|3033023_3035441_+	PAS domain-containing protein	NA	W8CYF6	Bacillus_phage	33.9	8.7e-24
WP_043295096.1|3035437_3035830_+	response regulator	NA	W8CYM9	Bacillus_phage	30.3	8.3e-09
WP_138300666.1|3035819_3037469_+	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	34.1	1.4e-17
WP_138300667.1|3037565_3040400_+	response regulator	NA	W8CYF6	Bacillus_phage	32.3	3.7e-26
WP_043295092.1|3040396_3040786_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	40.8	1.2e-15
>prophage 1
NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	122879	0	7038	122879	transposase	Acidithiobacillus_phage(100.0%)	4	NA	NA
WP_138299178.1|1883_2831_-	replication initiation protein	NA	NA	NA	NA	NA
WP_138299179.1|3974_4382_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138299180.1|4750_6265_+|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	53.3	3.0e-147
WP_019437637.1|6282_7038_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	54.8	1.9e-73
>prophage 2
NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	122879	18280	20568	122879	transposase	Acidithiobacillus_phage(100.0%)	2	NA	NA
WP_138299180.1|18280_19795_+|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	53.3	3.0e-147
WP_019437637.1|19812_20568_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	54.8	1.9e-73
>prophage 3
NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	122879	24741	25182	122879		uncultured_virus(100.0%)	1	NA	NA
WP_138299199.1|24741_25182_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A218MND2	uncultured_virus	38.0	1.7e-10
>prophage 4
NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	122879	29416	36326	122879		Pseudomonas_phage(50.0%)	8	NA	NA
WP_138299204.1|29416_30901_+	DEAD/DEAH box helicase	NA	A0A0H5ARP5	Pseudomonas_phage	48.3	8.6e-123
WP_138299205.1|31304_31589_+	HU family DNA-binding protein	NA	A3E2K9	Sodalis_phage	52.8	6.6e-16
WP_138299206.1|31585_31765_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138299207.1|31846_32293_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138299208.1|32313_33759_+	ATP-dependent helicase	NA	A0A1S5R1M3	Pseudomonas_phage	33.7	2.5e-50
WP_138299209.1|33775_34576_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138299210.1|34897_35251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138299211.1|35345_36326_+	AAA domain-containing protein	NA	L7TKP0	Rhizobium_phage	35.3	1.5e-30
>prophage 5
NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	122879	42792	45080	122879	transposase	Acidithiobacillus_phage(100.0%)	2	NA	NA
WP_019437637.1|42792_43548_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	54.8	1.9e-73
WP_138299180.1|43565_45080_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	53.3	3.0e-147
>prophage 6
NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	122879	54058	59514	122879		Pseudomonas_phage(25.0%)	9	NA	NA
WP_138299224.1|54058_54577_+	single-stranded DNA-binding protein	NA	A0A0S2SY36	Pseudomonas_phage	66.2	4.4e-50
WP_138299225.1|54642_55728_+	recombinase RecT	NA	I6S789	Marinomonas_phage	42.3	1.1e-39
WP_138299226.1|55730_55967_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138299227.1|56104_56734_+	hypothetical protein	NA	A0A1W6DXE2	Sphingobium_phage	40.3	2.0e-28
WP_138299228.1|56842_57022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138299229.1|57002_57506_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138299230.1|57502_57763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138299231.1|57883_58474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138299232.1|58479_59514_+	DNA recombination protein	NA	I4AZN3	Saccharomonospora_phage	28.1	1.6e-19
>prophage 7
NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	122879	77221	78514	122879		unidentified_phage(100.0%)	1	NA	NA
WP_017341082.1|77221_78514_+	group II intron reverse transcriptase/maturase	NA	H7BVN7	unidentified_phage	26.6	6.3e-21
>prophage 8
NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	122879	85204	90769	122879	transposase	Acidithiobacillus_phage(50.0%)	7	NA	NA
WP_138299253.1|85204_85879_+	NERD domain-containing protein	NA	A0A2R2ZH57	Clostridioides_phage	36.1	9.5e-13
WP_138299254.1|85866_86085_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138299255.1|86151_86913_-	DUF1845 family protein	NA	NA	NA	NA	NA
WP_079384029.1|86912_87092_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019437637.1|87041_87797_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	54.8	1.9e-73
WP_138299180.1|87814_89329_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	53.3	3.0e-147
WP_138299256.1|90064_90769_+	DUF551 domain-containing protein	NA	A0A0A1IUG6	Pseudomonas_phage	67.7	4.8e-07
>prophage 9
NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	122879	95511	101911	122879		Vibrio_phage(50.0%)	4	NA	NA
WP_138299264.1|95511_97017_-	ATP-dependent helicase	NA	A0A2I7R5Z1	Vibrio_phage	31.6	5.4e-48
WP_138299265.1|98191_98623_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020308217.1|98878_99139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138299266.1|99181_101911_-	class I SAM-dependent DNA methyltransferase	NA	Q6NE04	Leptospira_phage	46.2	1.2e-239
>prophage 10
NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	122879	110274	111372	122879		Clostridium_phage(100.0%)	1	NA	NA
WP_044314870.1|110274_111372_+	AAA family ATPase	NA	E2ELL2	Clostridium_phage	30.6	1.8e-08
>prophage 11
NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	122879	114647	121631	122879	integrase	Pseudomonas_phage(25.0%)	7	106271:106283	121301:121313
106271:106283	attL	AAAACCAGTCGCC	NA	NA	NA	NA
WP_011805433.1|114647_116069_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.0	2.1e-22
WP_138299281.1|116236_117130_+	plasmid replication/partition related protein	NA	A0A1B1IPY1	uncultured_Mediterranean_phage	31.0	7.9e-15
WP_138299282.1|117385_117745_+	H-NS histone	NA	NA	NA	NA	NA
WP_138299283.1|118248_119019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138299284.1|119173_120364_-|integrase	site-specific integrase	integrase	A0A077KET4	Ralstonia_phage	40.7	7.4e-77
WP_138299285.1|120360_120729_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138299286.1|120896_121631_-	serine/threonine protein phosphatase	NA	A0A291L9W7	Bordetella_phage	43.1	1.5e-40
121301:121313	attR	AAAACCAGTCGCC	NA	NA	NA	NA
