assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_005707215.1_ASM570721v1	NZ_CP039162	Staphylococcus aureus strain Lr12 chromosome, complete genome	1	340512-340613	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_9|NZ_CP039162.1_332071_332281_-,NA|128aa|up_7|NZ_CP039162.1_333105_333489_-,NA|33aa|up_1|NZ_CP039162.1_339736_339835_+,NA|86aa|up_0|NZ_CP039162.1_340045_340303_-,NA|221aa|down_1|NZ_CP039162.1_341703_342366_-,NA|179aa|down_7|NZ_CP039162.1_348457_348994_-	NA|70aa|up_9|NZ_CP039162.1_332071_332281_-	NA	NA|194aa|up_8|NZ_CP039162.1_332458_333040_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NZ_CP039162.1_333105_333489_-	NA	NA|209aa|up_6|NZ_CP039162.1_333758_334385_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_5|NZ_CP039162.1_334828_336352_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|NZ_CP039162.1_336367_336937_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|NZ_CP039162.1_337428_338184_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|NZ_CP039162.1_338263_339652_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_1|NZ_CP039162.1_339736_339835_+	NA	NA|86aa|up_0|NZ_CP039162.1_340045_340303_-	NA	NA|319aa|down_0|NZ_CP039162.1_340629_341586_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NZ_CP039162.1_341703_342366_-	NA	NA|136aa|down_2|NZ_CP039162.1_342508_342916_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP039162.1_343428_344007_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP039162.1_344006_345275_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP039162.1_345312_346779_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP039162.1_346803_348345_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP039162.1_348457_348994_-	NA	NA|243aa|down_8|NZ_CP039162.1_349361_350090_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP039162.1_350488_350761_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_005707215.1_ASM570721v1	NZ_CP039162	Staphylococcus aureus strain Lr12 chromosome, complete genome	2	718954-719032	2	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	1	718978-719008	NZ_CP039162.1_1587177-1587207	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|NZ_CP039162.1_709836_709941_+,NA|36aa|up_5|NZ_CP039162.1_711367_711475_+,NA	NA|191aa|up_9|NZ_CP039162.1_706277_706850_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP039162.1_707263_709795_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP039162.1_709836_709941_+	NA	NA|370aa|up_6|NZ_CP039162.1_710103_711214_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP039162.1_711367_711475_+	NA	NA|280aa|up_4|NZ_CP039162.1_711622_712462_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP039162.1_712635_713286_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP039162.1_713282_713519_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP039162.1_713787_715773_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP039162.1_715780_718627_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP039162.1_719290_720223_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP039162.1_720228_721068_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP039162.1_721075_721561_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP039162.1_721568_723008_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP039162.1_723074_724010_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP039162.1_724895_725807_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP039162.1_725803_726799_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP039162.1_726909_727854_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP039162.1_728417_729005_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP039162.1_729247_730150_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_005707215.1_ASM570721v1	NZ_CP039162	Staphylococcus aureus strain Lr12 chromosome, complete genome	3	724409-724678	1	CRT	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TTCTCTGTGTTGGGGCCCACACCCCAACTNGCATTG	36	4	40	724445-724466|724445-724466|724445-724466|724445-724466|724445-724466|724445-724466|724445-724466|724445-724466|724445-724466|724445-724466|724445-724466|724445-724466|724445-724466|724503-724525|724503-724525|724503-724525|724503-724525|724503-724525|724503-724525|724503-724525|724562-724583|724562-724583|724562-724583|724562-724583|724562-724583|724562-724583|724562-724583|724562-724583|724562-724583|724562-724583|724562-724583|724562-724583|724562-724583|724620-724642|724620-724642|724620-724642|724620-724642|724620-724642|724620-724642|724620-724642	NZ_CP039162.1_677110-677131|NZ_CP039162.1_767946-767967|NZ_CP039162.1_1552771-1552792|NZ_CP039162.1_1866388-1866409|NZ_CP039162.1_102305-102284|NZ_CP039162.1_102363-102342|NZ_CP039162.1_225497-225476|NZ_CP039162.1_553471-553450|NZ_CP039162.1_1283157-1283136|NZ_CP039162.1_1567326-1567305|NZ_CP039162.1_879440-879461|NZ_CP039162.1_1587032-1587053|NZ_CP039162.1_1587265-1587286|NZ_CP039162.1_102422-102400|NZ_CP039162.1_678304-678282|NZ_CP039162.1_1283274-1283252|NZ_CP039162.1_1866446-1866468|NZ_CP039162.1_2198414-2198436|NZ_CP039162.1_1371570-1371592|NZ_CP039162.1_1966686-1966708|NZ_CP039162.1_677110-677131|NZ_CP039162.1_767946-767967|NZ_CP039162.1_1552771-1552792|NZ_CP039162.1_1866388-1866409|NZ_CP039162.1_102305-102284|NZ_CP039162.1_102363-102342|NZ_CP039162.1_225497-225476|NZ_CP039162.1_553471-553450|NZ_CP039162.1_1283157-1283136|NZ_CP039162.1_1567326-1567305|NZ_CP039162.1_879440-879461|NZ_CP039162.1_1587032-1587053|NZ_CP039162.1_1587265-1587286|NZ_CP039162.1_102422-102400|NZ_CP039162.1_678304-678282|NZ_CP039162.1_1283274-1283252|NZ_CP039162.1_1866446-1866468|NZ_CP039162.1_2198414-2198436|NZ_CP039162.1_1371570-1371592|NZ_CP039162.1_1966686-1966708	NA	4	4	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA|61aa|down_6|NZ_CP039162.1_731733_731916_+	NA|280aa|up_9|NZ_CP039162.1_711622_712462_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP039162.1_712635_713286_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP039162.1_713282_713519_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP039162.1_713787_715773_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP039162.1_715780_718627_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP039162.1_719290_720223_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP039162.1_720228_721068_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP039162.1_721075_721561_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP039162.1_721568_723008_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP039162.1_723074_724010_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP039162.1_724895_725807_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP039162.1_725803_726799_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP039162.1_726909_727854_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP039162.1_728417_729005_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP039162.1_729247_730150_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP039162.1_730852_731482_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|61aa|down_6|NZ_CP039162.1_731733_731916_+	NA	NA|338aa|down_7|NZ_CP039162.1_732238_733252_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_8|NZ_CP039162.1_733304_734315_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_9|NZ_CP039162.1_734453_735644_+	PRK00073, pgk, phosphoglycerate kinase; Provisional
GCF_005707215.1_ASM570721v1	NZ_CP039162	Staphylococcus aureus strain Lr12 chromosome, complete genome	4	731723-731802	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CAGCTTCTGTGTTGGGGCCCCGCC	24	1	7	731747-731778|731747-731778|731747-731778|731747-731778|731747-731778|731747-731778|731747-731778	NZ_CP039162.1_3655-3686|NZ_CP039162.1_768203-768234|NZ_CP039162.1_1567395-1567364|NZ_CP039162.1_1990713-1990682|NZ_CP039162.1_2377225-2377256|NZ_CP039162.1_1283341-1283310|NZ_CP039162.1_1072739-1072708	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA|153aa|down_6|NZ_CP039162.1_739819_740278_+	NA|280aa|up_9|NZ_CP039162.1_720228_721068_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_8|NZ_CP039162.1_721075_721561_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_7|NZ_CP039162.1_721568_723008_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_6|NZ_CP039162.1_723074_724010_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|up_5|NZ_CP039162.1_724895_725807_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|up_4|NZ_CP039162.1_725803_726799_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|up_3|NZ_CP039162.1_726909_727854_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|up_2|NZ_CP039162.1_728417_729005_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|up_1|NZ_CP039162.1_729247_730150_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|up_0|NZ_CP039162.1_730852_731482_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_0|NZ_CP039162.1_732238_733252_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_1|NZ_CP039162.1_733304_734315_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_2|NZ_CP039162.1_734453_735644_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_3|NZ_CP039162.1_735765_736527_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|506aa|down_4|NZ_CP039162.1_736529_738047_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|435aa|down_5|NZ_CP039162.1_738176_739481_+	PRK00077, eno, enolase; Provisional	NA|153aa|down_6|NZ_CP039162.1_739819_740278_+	NA	NA|78aa|down_7|NZ_CP039162.1_740344_740578_+	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|247aa|down_8|NZ_CP039162.1_740693_741434_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|786aa|down_9|NZ_CP039162.1_741467_743825_+	TIGR02063, Ribonuclease_R, ribonuclease R
GCF_005707215.1_ASM570721v1	NZ_CP039162	Staphylococcus aureus strain Lr12 chromosome, complete genome	5	767873-767954	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	767897-767930	NZ_CP039162.1_1283265-1283232	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|62aa|up_8|NZ_CP039162.1_763092_763278_+,NA|38aa|up_1|NZ_CP039162.1_766775_766889_+,NA	NA|165aa|up_9|NZ_CP039162.1_762401_762896_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|62aa|up_8|NZ_CP039162.1_763092_763278_+	NA	NA|141aa|up_7|NZ_CP039162.1_763294_763717_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP039162.1_763864_764581_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP039162.1_764663_765203_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP039162.1_765353_765674_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP039162.1_765817_766174_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP039162.1_766331_766712_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP039162.1_766775_766889_+	NA	NA|293aa|up_0|NZ_CP039162.1_766890_767769_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP039162.1_768565_768952_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP039162.1_768944_769241_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP039162.1_769490_770516_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP039162.1_770508_771204_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP039162.1_771221_772043_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP039162.1_772396_772591_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP039162.1_772824_773676_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP039162.1_774003_774765_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP039162.1_774862_776170_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|NZ_CP039162.1_776284_777526_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_005707215.1_ASM570721v1	NZ_CP039162	Staphylococcus aureus strain Lr12 chromosome, complete genome	6	1552695-1552779	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	1552721-1552753|1552721-1552753	NZ_CP039162.1_102413-102381|NZ_CP039162.1_1283265-1283233	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|228aa|up_9|NZ_CP039162.1_1541904_1542588_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NZ_CP039162.1_1542831_1543008_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_CP039162.1_1543300_1544647_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_CP039162.1_1544653_1545406_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_CP039162.1_1545407_1546346_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_CP039162.1_1546349_1547489_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_CP039162.1_1547624_1549457_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_CP039162.1_1549525_1550152_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_CP039162.1_1550183_1551161_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_CP039162.1_1551261_1552386_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_CP039162.1_1552951_1554775_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_CP039162.1_1555120_1555372_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_CP039162.1_1555416_1556391_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|716aa|down_3|NZ_CP039162.1_1556447_1558595_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_CP039162.1_1558653_1559115_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_CP039162.1_1559206_1559893_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_CP039162.1_1559932_1560649_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_CP039162.1_1560651_1561005_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_CP039162.1_1561005_1561590_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_CP039162.1_1561579_1562149_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_005707215.1_ASM570721v1	NZ_CP039162	Staphylococcus aureus strain Lr12 chromosome, complete genome	7	1966605-1966686	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	GGCCCCCACCCCAACTTACATTGT	24	1	5	1966629-1966662|1966629-1966662|1966629-1966662|1966629-1966662|1966629-1966662	NZ_CP039162.1_718953-718986|NZ_CP039162.1_1072444-1072411|NZ_CP039162.1_1672737-1672704|NZ_CP039162.1_1287606-1287639|NZ_CP039162.1_2652864-2652897	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|61aa|up_6|NZ_CP039162.1_1959392_1959575_+,NA|49aa|up_5|NZ_CP039162.1_1959610_1959757_+,NA|205aa|up_4|NZ_CP039162.1_1959753_1960368_-,NA	NA|81aa|up_9|NZ_CP039162.1_1957356_1957599_-	pfam05339, DUF739, Protein of unknown function (DUF739)	NA|239aa|up_8|NZ_CP039162.1_1957762_1958479_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|286aa|up_7|NZ_CP039162.1_1958490_1959348_+	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|61aa|up_6|NZ_CP039162.1_1959392_1959575_+	NA	NA|49aa|up_5|NZ_CP039162.1_1959610_1959757_+	NA	NA|205aa|up_4|NZ_CP039162.1_1959753_1960368_-	NA	NA|346aa|up_3|NZ_CP039162.1_1960475_1961513_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_2|NZ_CP039162.1_1962631_1963648_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NZ_CP039162.1_1963669_1964725_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NZ_CP039162.1_1965160_1966384_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NZ_CP039162.1_1966827_1968135_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|539aa|down_1|NZ_CP039162.1_1968674_1970291_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|NZ_CP039162.1_1970366_1970651_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|NZ_CP039162.1_1970825_1971569_+	pfam02517, Abi, CAAX protease self-immunity	NA|420aa|down_4|NZ_CP039162.1_1971593_1972853_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|NZ_CP039162.1_1973049_1973676_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|NZ_CP039162.1_1974036_1974822_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|NZ_CP039162.1_1975421_1975556_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_8|NZ_CP039162.1_1975791_1976355_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|48aa|down_9|NZ_CP039162.1_1976357_1976501_+	smart00794, AgrD, Staphylococcal AgrD protein
GCF_005707215.1_ASM570721v1	NZ_CP039162	Staphylococcus aureus strain Lr12 chromosome, complete genome	8	2092306-2092386	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|77aa|up_5|NZ_CP039162.1_2087180_2087411_-,NA|364aa|up_0|NZ_CP039162.1_2091197_2092289_+,NA|35aa|down_0|NZ_CP039162.1_2092721_2092826_-,NA|61aa|down_1|NZ_CP039162.1_2093258_2093441_-,NA|53aa|down_2|NZ_CP039162.1_2093505_2093664_+,NA|31aa|down_3|NZ_CP039162.1_2094100_2094193_+	NA|237aa|up_9|NZ_CP039162.1_2082792_2083503_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP039162.1_2083623_2084067_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP039162.1_2084265_2084679_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP039162.1_2085135_2086509_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP039162.1_2087180_2087411_-	NA	NA|313aa|up_4|NZ_CP039162.1_2087441_2088380_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP039162.1_2088815_2089481_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP039162.1_2089632_2089953_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP039162.1_2089954_2090932_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP039162.1_2091197_2092289_+	NA	NA|35aa|down_0|NZ_CP039162.1_2092721_2092826_-	NA	NA|61aa|down_1|NZ_CP039162.1_2093258_2093441_-	NA	NA|53aa|down_2|NZ_CP039162.1_2093505_2093664_+	NA	NA|31aa|down_3|NZ_CP039162.1_2094100_2094193_+	NA	NA|286aa|down_4|NZ_CP039162.1_2094321_2095179_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_5|NZ_CP039162.1_2095246_2096029_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_6|NZ_CP039162.1_2096260_2098066_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_7|NZ_CP039162.1_2098746_2100285_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_8|NZ_CP039162.1_2100319_2102452_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_9|NZ_CP039162.1_2102463_2102898_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]
GCF_005707215.1_ASM570721v1	NZ_CP039162	Staphylococcus aureus strain Lr12 chromosome, complete genome	9	2104627-2104712	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|61aa|up_9|NZ_CP039162.1_2093258_2093441_-,NA|53aa|up_8|NZ_CP039162.1_2093505_2093664_+,NA|31aa|up_7|NZ_CP039162.1_2094100_2094193_+,NA	NA|61aa|up_9|NZ_CP039162.1_2093258_2093441_-	NA	NA|53aa|up_8|NZ_CP039162.1_2093505_2093664_+	NA	NA|31aa|up_7|NZ_CP039162.1_2094100_2094193_+	NA	NA|286aa|up_6|NZ_CP039162.1_2094321_2095179_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP039162.1_2095246_2096029_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP039162.1_2096260_2098066_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP039162.1_2098746_2100285_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP039162.1_2100319_2102452_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP039162.1_2102463_2102898_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP039162.1_2102897_2104004_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP039162.1_2112047_2113403_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP039162.1_2113429_2114362_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP039162.1_2114363_2115173_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP039162.1_2115361_2116270_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP039162.1_2119081_2120146_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP039162.1_2120293_2121736_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP039162.1_2122058_2122532_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP039162.1_2122630_2123974_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP039162.1_2124150_2124834_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP039162.1_2124852_2126040_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_005707215.1_ASM570721v1	NZ_CP039162	Staphylococcus aureus strain Lr12 chromosome, complete genome	10	2209243-2209323	9	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	12	2209268-2209298|2209268-2209298|2209268-2209298|2209268-2209298|2209268-2209298|2209268-2209298|2209268-2209298|2209268-2209298|2209268-2209298|2209268-2209298|2209268-2209298|2209268-2209298	NZ_CP039162.1_731697-731727|NZ_CP039162.1_3661-3691|NZ_CP039162.1_768209-768239|NZ_CP039162.1_975439-975469|NZ_CP039162.1_1371623-1371653|NZ_CP039162.1_2198467-2198497|NZ_CP039162.1_2377231-2377261|NZ_CP039162.1_301804-301774|NZ_CP039162.1_553535-553505|NZ_CP039162.1_1076851-1076821|NZ_CP039162.1_1283221-1283191|NZ_CP039162.1_1567389-1567359	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|55aa|up_9|NZ_CP039162.1_2199776_2199941_+,NA|106aa|up_8|NZ_CP039162.1_2200185_2200503_+,NA|84aa|up_5|NZ_CP039162.1_2205624_2205876_+,NA|62aa|up_0|NZ_CP039162.1_2209015_2209201_+,NA	NA|55aa|up_9|NZ_CP039162.1_2199776_2199941_+	NA	NA|106aa|up_8|NZ_CP039162.1_2200185_2200503_+	NA	NA|1056aa|up_7|NZ_CP039162.1_2200686_2203854_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP039162.1_2203970_2205236_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP039162.1_2205624_2205876_+	NA	NA|255aa|up_4|NZ_CP039162.1_2205867_2206632_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP039162.1_2206793_2207234_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP039162.1_2207226_2208438_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP039162.1_2208539_2208890_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP039162.1_2209015_2209201_+	NA	NA|341aa|down_0|NZ_CP039162.1_2209466_2210489_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP039162.1_2210508_2211108_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP039162.1_2211114_2211348_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP039162.1_2211353_2211800_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP039162.1_2211813_2212299_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP039162.1_2212295_2213555_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP039162.1_2213617_2214112_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP039162.1_2214113_2214620_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP039162.1_2214650_2215655_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP039162.1_2215824_2216430_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
