assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_005707015.1_ASM570701v1	NZ_CP039167	Staphylococcus aureus strain R50 chromosome, complete genome	1	230452-230585	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	2	20	230475-230506|230475-230506|230475-230506|230475-230506|230475-230506|230475-230506|230475-230506|230475-230506|230475-230506|230475-230506|230475-230506|230475-230506|230475-230506|230475-230506|230475-230506|230530-230562|230530-230562|230530-230562|230530-230562|230530-230562	NZ_CP039167.1_230586-230617|NZ_CP039167.1_743070-743039|NZ_CP039167.1_743128-743097|NZ_CP039167.1_743186-743155|NZ_CP039167.1_802070-802039|NZ_CP039167.1_1009884-1009853|NZ_CP039167.1_1319623-1319654|NZ_CP039167.1_1423033-1423002|NZ_CP039167.1_1423091-1423060|NZ_CP039167.1_1645496-1645465|NZ_CP039167.1_1660010-1660041|NZ_CP039167.1_1964104-1964073|NZ_CP039167.1_2571822-2571853|NZ_CP039167.1_2865844-2865813|NZ_CP039167.1_2865902-2865871|NZ_CP039167.1_10455-10423|NZ_CP039167.1_1111189-1111221|NZ_CP039167.1_1195333-1195365|NZ_CP039167.1_1660067-1660099|NZ_CP039167.1_2703401-2703369	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|45aa|down_1|NZ_CP039167.1_231682_231817_+,NA|60aa|down_6|NZ_CP039167.1_235537_235717_+,NA|131aa|down_7|NZ_CP039167.1_235766_236159_+	NA|574aa|up_9|NZ_CP039167.1_217902_219624_+	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|225aa|up_8|NZ_CP039167.1_219767_220442_+	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|580aa|up_7|NZ_CP039167.1_220701_222441_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|247aa|up_6|NZ_CP039167.1_222443_223184_+	PRK14084, PRK14084, DNA-binding response regulator	NA|148aa|up_5|NZ_CP039167.1_223296_223740_+	PRK04125, PRK04125, antiholin-like protein LrgA	NA|234aa|up_4|NZ_CP039167.1_223732_224434_+	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|764aa|up_3|NZ_CP039167.1_224773_227065_+	COG3256, NorB, Nitric oxide reductase large subunit [Inorganic ion transport and metabolism]	NA|235aa|up_2|NZ_CP039167.1_227290_227995_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|264aa|up_1|NZ_CP039167.1_228143_228935_+	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|479aa|up_0|NZ_CP039167.1_228950_230387_+	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|254aa|down_0|NZ_CP039167.1_230902_231664_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|45aa|down_1|NZ_CP039167.1_231682_231817_+	NA	NA|305aa|down_2|NZ_CP039167.1_231914_232829_-	TIGR02152, Putative_ribokinase, ribokinase	NA|135aa|down_3|NZ_CP039167.1_232856_233261_-	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|294aa|down_4|NZ_CP039167.1_233275_234157_-	pfam06800, Sugar_transport, Sugar transport protein	NA|333aa|down_5|NZ_CP039167.1_234388_235387_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|60aa|down_6|NZ_CP039167.1_235537_235717_+	NA	NA|131aa|down_7|NZ_CP039167.1_235766_236159_+	NA	NA|459aa|down_8|NZ_CP039167.1_236286_237663_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|331aa|down_9|NZ_CP039167.1_237896_238889_+	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane]
GCF_005707015.1_ASM570701v1	NZ_CP039167	Staphylococcus aureus strain R50 chromosome, complete genome	2	344435-344535	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|128aa|up_8|NZ_CP039167.1_337040_337424_-,NA|98aa|up_6|NZ_CP039167.1_338378_338672_-,NA|34aa|up_1|NZ_CP039167.1_343659_343761_+,NA|86aa|up_0|NZ_CP039167.1_343968_344226_-,NA|221aa|down_1|NZ_CP039167.1_345625_346288_-,NA|131aa|down_8|NZ_CP039167.1_354509_354902_-,NA|74aa|down_9|NZ_CP039167.1_354923_355145_-	NA|194aa|up_9|NZ_CP039167.1_336393_336975_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_8|NZ_CP039167.1_337040_337424_-	NA	NA|209aa|up_7|NZ_CP039167.1_337679_338306_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_6|NZ_CP039167.1_338378_338672_-	NA	NA|508aa|up_5|NZ_CP039167.1_338750_340274_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|NZ_CP039167.1_340289_340859_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|NZ_CP039167.1_341350_342106_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|NZ_CP039167.1_342186_343575_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_1|NZ_CP039167.1_343659_343761_+	NA	NA|86aa|up_0|NZ_CP039167.1_343968_344226_-	NA	NA|319aa|down_0|NZ_CP039167.1_344551_345508_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP039167.1_345625_346288_-	NA	NA|136aa|down_2|NZ_CP039167.1_346430_346838_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP039167.1_347350_347929_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP039167.1_347928_349197_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP039167.1_349234_350701_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP039167.1_350725_352267_+	PRK00074, guaA, GMP synthase; Reviewed	NA|369aa|down_7|NZ_CP039167.1_352778_353885_+	pfam07751, Abi_2, Abi-like protein	NA|131aa|down_8|NZ_CP039167.1_354509_354902_-	NA	NA|74aa|down_9|NZ_CP039167.1_354923_355145_-	NA
GCF_005707015.1_ASM570701v1	NZ_CP039167	Staphylococcus aureus strain R50 chromosome, complete genome	3	580458-580550	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|97aa|up_1|NZ_CP039167.1_579286_579577_-,NA|169aa|down_4|NZ_CP039167.1_584297_584804_+,NA|239aa|down_5|NZ_CP039167.1_584965_585682_+	NA|313aa|up_9|NZ_CP039167.1_571205_572144_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP039167.1_572354_572891_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP039167.1_573059_573536_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP039167.1_573575_574871_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP039167.1_574898_575420_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP039167.1_575919_576930_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|128aa|up_3|NZ_CP039167.1_577238_577622_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_2|NZ_CP039167.1_577618_579280_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|97aa|up_1|NZ_CP039167.1_579286_579577_-	NA	NA|212aa|up_0|NZ_CP039167.1_579670_580306_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|NZ_CP039167.1_580678_581506_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP039167.1_581653_582604_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP039167.1_582658_583378_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP039167.1_583361_584162_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP039167.1_584297_584804_+	NA	NA|239aa|down_5|NZ_CP039167.1_584965_585682_+	NA	NA|263aa|down_6|NZ_CP039167.1_585850_586639_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP039167.1_586889_587264_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP039167.1_588211_589141_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP039167.1_589335_589560_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_005707015.1_ASM570701v1	NZ_CP039167	Staphylococcus aureus strain R50 chromosome, complete genome	4	801969-802050	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|NZ_CP039167.1_800871_800985_+,NA	NA|206aa|up_9|NZ_CP039167.1_795726_796344_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP039167.1_796498_796993_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP039167.1_797391_797814_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP039167.1_797961_798678_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP039167.1_798760_799300_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP039167.1_799449_799770_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP039167.1_799913_800270_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP039167.1_800427_800808_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP039167.1_800871_800985_+	NA	NA|293aa|up_0|NZ_CP039167.1_800986_801865_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP039167.1_802606_802993_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP039167.1_802985_803282_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP039167.1_803531_804557_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP039167.1_804549_805245_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP039167.1_805261_806083_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP039167.1_806436_806631_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP039167.1_806864_807716_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP039167.1_808043_808805_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP039167.1_808903_810211_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|NZ_CP039167.1_810325_811567_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_005707015.1_ASM570701v1	NZ_CP039167	Staphylococcus aureus strain R50 chromosome, complete genome	5	1679773-1679856	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGGCCCCATCCCCAACTT	24	1	1	1679797-1679832	NZ_CP039167.1_1645403-1645438	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|49aa|down_3|NZ_CP039167.1_1683860_1684007_-,NA|43aa|down_8|NZ_CP039167.1_1687043_1687172_-	NA|208aa|up_9|NZ_CP039167.1_1668506_1669130_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|423aa|up_8|NZ_CP039167.1_1669129_1670398_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_7|NZ_CP039167.1_1670409_1671333_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_6|NZ_CP039167.1_1671335_1671974_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_5|NZ_CP039167.1_1672258_1672567_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_4|NZ_CP039167.1_1672581_1673010_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|87aa|up_3|NZ_CP039167.1_1673013_1673274_-	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|877aa|up_2|NZ_CP039167.1_1673336_1675967_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|NZ_CP039167.1_1676309_1678787_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|NZ_CP039167.1_1678788_1679457_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NZ_CP039167.1_1680037_1681156_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|NZ_CP039167.1_1681156_1682299_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|338aa|down_2|NZ_CP039167.1_1682610_1683624_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|49aa|down_3|NZ_CP039167.1_1683860_1684007_-	NA	NA|61aa|down_4|NZ_CP039167.1_1684046_1684229_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_5|NZ_CP039167.1_1684328_1684751_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_6|NZ_CP039167.1_1684835_1686110_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_7|NZ_CP039167.1_1686270_1687044_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|43aa|down_8|NZ_CP039167.1_1687043_1687172_-	NA	NA|589aa|down_9|NZ_CP039167.1_1687504_1689271_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated
GCF_005707015.1_ASM570701v1	NZ_CP039167	Staphylococcus aureus strain R50 chromosome, complete genome	6	2154975-2155055	6	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP039167.1_2149849_2150080_-,NA|364aa|up_0|NZ_CP039167.1_2153866_2154958_+,NA|35aa|down_0|NZ_CP039167.1_2155390_2155495_-,NA|61aa|down_1|NZ_CP039167.1_2155927_2156110_-,NA|53aa|down_2|NZ_CP039167.1_2156174_2156333_+,NA|31aa|down_3|NZ_CP039167.1_2156769_2156862_+	NA|237aa|up_9|NZ_CP039167.1_2145460_2146171_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP039167.1_2146291_2146735_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP039167.1_2146934_2147348_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP039167.1_2147804_2149178_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP039167.1_2149849_2150080_-	NA	NA|313aa|up_4|NZ_CP039167.1_2150110_2151049_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP039167.1_2151484_2152150_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP039167.1_2152301_2152622_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP039167.1_2152623_2153601_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP039167.1_2153866_2154958_+	NA	NA|35aa|down_0|NZ_CP039167.1_2155390_2155495_-	NA	NA|61aa|down_1|NZ_CP039167.1_2155927_2156110_-	NA	NA|53aa|down_2|NZ_CP039167.1_2156174_2156333_+	NA	NA|31aa|down_3|NZ_CP039167.1_2156769_2156862_+	NA	NA|286aa|down_4|NZ_CP039167.1_2156990_2157848_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_5|NZ_CP039167.1_2157915_2158698_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_6|NZ_CP039167.1_2158929_2160735_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_7|NZ_CP039167.1_2161415_2162954_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_8|NZ_CP039167.1_2162988_2165121_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_9|NZ_CP039167.1_2165132_2165567_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]
GCF_005707015.1_ASM570701v1	NZ_CP039167	Staphylococcus aureus strain R50 chromosome, complete genome	7	2167296-2167381	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|61aa|up_9|NZ_CP039167.1_2155927_2156110_-,NA|53aa|up_8|NZ_CP039167.1_2156174_2156333_+,NA|31aa|up_7|NZ_CP039167.1_2156769_2156862_+,NA	NA|61aa|up_9|NZ_CP039167.1_2155927_2156110_-	NA	NA|53aa|up_8|NZ_CP039167.1_2156174_2156333_+	NA	NA|31aa|up_7|NZ_CP039167.1_2156769_2156862_+	NA	NA|286aa|up_6|NZ_CP039167.1_2156990_2157848_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP039167.1_2157915_2158698_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP039167.1_2158929_2160735_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP039167.1_2161415_2162954_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP039167.1_2162988_2165121_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP039167.1_2165132_2165567_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP039167.1_2165566_2166673_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP039167.1_2174714_2176070_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP039167.1_2176096_2177029_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP039167.1_2177030_2177840_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP039167.1_2178028_2178937_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP039167.1_2180163_2181228_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP039167.1_2181375_2182818_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP039167.1_2183140_2183614_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP039167.1_2183712_2185056_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP039167.1_2185232_2185916_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP039167.1_2185934_2187122_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_005707015.1_ASM570701v1	NZ_CP039167	Staphylococcus aureus strain R50 chromosome, complete genome	8	2263708-2263900	1,8	CRT,CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA,TCTATGTTGGGGCCCCGCCAACTTG	23,25	3	23	2263786-2263821|2263786-2263821|2263786-2263821|2263845-2263877|2263845-2263877|2263845-2263877|2263845-2263877|2263845-2263877|2263845-2263877|2263845-2263877|2263845-2263877|2263843-2263873|2263843-2263873|2263843-2263873|2263843-2263873|2263843-2263873|2263843-2263873|2263843-2263873|2263843-2263873|2263843-2263873|2263843-2263873|2263843-2263873|2263843-2263873	NZ_CP039167.1_1111169-1111134|NZ_CP039167.1_1825085-1825050|NZ_CP039167.1_1645345-1645380|NZ_CP039167.1_2252928-2252960|NZ_CP039167.1_2538746-2538778|NZ_CP039167.1_1319713-1319681|NZ_CP039167.1_165033-165065|NZ_CP039167.1_750305-750337|NZ_CP039167.1_750361-750393|NZ_CP039167.1_802308-802340|NZ_CP039167.1_1962730-1962762|NZ_CP039167.1_1009908-1009938|NZ_CP039167.1_1009966-1009996|NZ_CP039167.1_1645404-1645434|NZ_CP039167.1_2252926-2252956|NZ_CP039167.1_2538744-2538774|NZ_CP039167.1_305817-305787|NZ_CP039167.1_1319715-1319685|NZ_CP039167.1_165031-165061|NZ_CP039167.1_750303-750333|NZ_CP039167.1_750359-750389|NZ_CP039167.1_802306-802336|NZ_CP039167.1_1962728-1962758	NA:NA	3,1	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP039167.1_2254235_2254400_+,NA|106aa|up_8|NZ_CP039167.1_2254644_2254962_+,NA|84aa|up_5|NZ_CP039167.1_2260086_2260338_+,NA|62aa|up_0|NZ_CP039167.1_2263477_2263663_+,NA	NA|55aa|up_9|NZ_CP039167.1_2254235_2254400_+	NA	NA|106aa|up_8|NZ_CP039167.1_2254644_2254962_+	NA	NA|1056aa|up_7|NZ_CP039167.1_2255148_2258316_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP039167.1_2258432_2259698_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP039167.1_2260086_2260338_+	NA	NA|255aa|up_4|NZ_CP039167.1_2260329_2261094_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP039167.1_2261255_2261696_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP039167.1_2261688_2262900_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP039167.1_2263001_2263352_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP039167.1_2263477_2263663_+	NA	NA|341aa|down_0|NZ_CP039167.1_2264041_2265064_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP039167.1_2265083_2265683_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP039167.1_2265689_2265923_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP039167.1_2265928_2266375_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP039167.1_2266388_2266874_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP039167.1_2266870_2268130_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP039167.1_2268192_2268687_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP039167.1_2268688_2269195_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP039167.1_2269225_2270230_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP039167.1_2270399_2271005_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_005707015.1_ASM570701v1	NZ_CP039167	Staphylococcus aureus strain R50 chromosome, complete genome	9	2414209-2414306	9	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTTCTGCGAATTTTATGAGCTAGAAAGGC	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|35aa|up_2|NZ_CP039167.1_2411931_2412036_+,NA|35aa|down_0|NZ_CP039167.1_2414499_2414604_-,NA|61aa|down_2|NZ_CP039167.1_2416230_2416413_-	NA|200aa|up_9|NZ_CP039167.1_2405408_2406008_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|up_8|NZ_CP039167.1_2406026_2406389_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|up_7|NZ_CP039167.1_2406643_2407894_+	pfam02388, FemAB, FemAB family	NA|244aa|up_6|NZ_CP039167.1_2407990_2408722_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_5|NZ_CP039167.1_2408718_2409438_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_4|NZ_CP039167.1_2409418_2410198_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|480aa|up_3|NZ_CP039167.1_2410318_2411758_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|35aa|up_2|NZ_CP039167.1_2411931_2412036_+	NA	NA|229aa|up_1|NZ_CP039167.1_2412189_2412876_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|NZ_CP039167.1_2413202_2414069_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|35aa|down_0|NZ_CP039167.1_2414499_2414604_-	NA	NA|438aa|down_1|NZ_CP039167.1_2414698_2416012_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|61aa|down_2|NZ_CP039167.1_2416230_2416413_-	NA	NA|310aa|down_3|NZ_CP039167.1_2416547_2417477_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_4|NZ_CP039167.1_2418043_2418991_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_5|NZ_CP039167.1_2418992_2419970_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|down_6|NZ_CP039167.1_2420021_2420489_-	pfam06177, QueT, QueT transporter	NA|231aa|down_7|NZ_CP039167.1_2420499_2421192_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|down_8|NZ_CP039167.1_2421202_2422318_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|down_9|NZ_CP039167.1_2422295_2423303_-	PRK06256, PRK06256, biotin synthase; Validated
