The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP035541	Staphylococcus haemolyticus strain PK-01 chromosome, complete genome	2615683	83823	148641	2615683	protease,transposase	Staphylococcus_phage(58.82%)	57	NA	NA
WP_001105999.1|83823_84498_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.0e-127
WP_078098711.1|84529_85171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031775208.1|85447_86029_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001631039.1|86535_86895_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000391495.1|87101_87428_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_088403147.1|87530_87629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088403146.1|87748_89683_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	36.3	8.6e-99
WP_138109455.1|90844_92173_-	persulfide dioxygenase-sulfurtransferase CstB	NA	NA	NA	NA	NA
WP_000085030.1|92191_93259_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_000456195.1|93397_93658_+	persulfide-sensing transcriptional repressor CstR	NA	NA	NA	NA	NA
WP_000623679.1|93654_94413_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_016187230.1|94830_95355_+	DUF1541 domain-containing protein	NA	NA	NA	NA	NA
WP_000653291.1|95706_96693_+	ADP-ribosylglycohydrolase family protein	NA	A0A172WZB4	Catopsilia_pomona_nucleopolyhedrovirus	22.2	6.1e-08
WP_000842690.1|98041_98980_+	ribokinase	NA	NA	NA	NA	NA
WP_002499392.1|99846_100818_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086045745.1|101254_101335_-	hypothetical protein	NA	A0A0N9SIX5	Staphylococcus_phage	96.2	1.0e-06
WP_000011355.1|101796_101940_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138109456.1|101981_102605_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_011274386.1|103120_103816_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_016931274.1|103790_106460_-	sensor histidine kinase KdpD	NA	A0A2K9L0Z8	Tupanvirus	21.5	6.0e-10
WP_000631574.1|106626_106707_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_011274388.1|106727_108404_+	potassium-transporting ATPase subunit A	NA	NA	NA	NA	NA
WP_011274389.1|108422_110444_+	K(+)-transporting ATPase subunit B	NA	E4ZFI9	Streptococcus_phage	29.2	1.0e-41
WP_016931276.1|110459_111017_+	K(+)-transporting ATPase subunit C	NA	NA	NA	NA	NA
WP_016931279.1|112558_112858_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_053016564.1|113168_113843_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	97.8	1.9e-125
WP_002434548.1|114356_114704_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002434046.1|114781_115465_+	type 1 glutamine amidotransferase domain-containing protein	NA	NA	NA	NA	NA
WP_002434095.1|115486_116152_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_002434486.1|116155_117160_+	NADP-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_002434567.1|117168_117534_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011274431.1|118069_118687_+	CadD family cadmium resistance transporter	NA	NA	NA	NA	NA
WP_011274432.1|118705_119047_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011274433.1|119066_119468_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	82.2	1.3e-57
WP_011274434.1|119485_120775_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	81.6	5.6e-187
WP_011274435.1|120774_121092_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	64.4	2.5e-32
WP_136719840.1|121383_123405_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	29.9	1.3e-65
WP_087671611.1|123443_123968_+	DUF1541 domain-containing protein	NA	NA	NA	NA	NA
WP_138109457.1|124343_124829_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_016931284.1|125009_125423_+	type I restriction endonuclease subunit R	NA	NA	NA	NA	NA
WP_016931285.1|125491_127030_-	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_050897638.1|128241_128877_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	94.8	1.4e-114
WP_016931288.1|129014_130136_+	NAD(P)-binding domain-containing protein	NA	NA	NA	NA	NA
WP_016931289.1|130129_131470_+	ferrous iron transporter B	NA	NA	NA	NA	NA
WP_016931293.1|133403_135566_+	peptidase domain-containing ABC transporter	NA	W8CYL7	Bacillus_phage	25.7	5.4e-41
WP_126717176.1|136288_136519_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138109458.1|136527_137838_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	31.4	2.3e-42
WP_049426475.1|138093_139245_-	chromate efflux transporter	NA	NA	NA	NA	NA
WP_016930481.1|139285_139678_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	84.6	3.9e-59
WP_070499327.1|139695_140985_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	81.8	1.0e-188
WP_016930483.1|140987_141302_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	69.2	6.4e-36
WP_016930485.1|142542_143430_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_053020187.1|143663_143852_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011274452.1|143938_144463_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_011274453.1|144536_145415_-	GTP-binding protein	NA	NA	NA	NA	NA
WP_011274454.1|145681_146665_+	zinc ABC transporter solute-binding protein	NA	NA	NA	NA	NA
WP_053020186.1|147270_148641_+|protease	trypsin-like serine protease	protease	NA	NA	NA	NA
>prophage 2
NZ_CP035541	Staphylococcus haemolyticus strain PK-01 chromosome, complete genome	2615683	1100709	1155652	2615683	tRNA,integrase	Staphylococcus_phage(56.82%)	54	1106326:1106342	1148456:1148472
WP_000420682.1|1100709_1101024_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
WP_000985015.1|1101039_1101426_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000813488.1|1101454_1102840_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000879507.1|1102842_1102995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000398284.1|1103017_1104223_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_001009056.1|1104265_1104487_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000342539.1|1104603_1105101_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_000506270.1|1105075_1105582_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000331160.1|1105565_1108013_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
1106326:1106342	attL	CTTACTTTACCATTAAC	NA	NA	NA	NA
WP_000804748.1|1108015_1110193_+	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_053023762.1|1110189_1111191_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	99.7	1.9e-190
WP_001224318.1|1111187_1112120_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
WP_012386611.1|1112394_1112481_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000691736.1|1112496_1114416_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.5	0.0e+00
WP_011058338.1|1114516_1114702_+	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	67.9	3.9e-17
WP_001227347.1|1114761_1115115_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_013670292.1|1115319_1115391_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000804885.1|1115619_1116042_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_000857133.1|1116038_1116269_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_024273489.1|1116494_1116635_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000814511.1|1116729_1116933_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_001291561.1|1117014_1118232_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
WP_053023761.1|1118565_1119954_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	62.2	1.6e-168
WP_011275434.1|1119955_1120963_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	52.9	5.0e-98
WP_011275435.1|1120959_1121196_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	75.9	6.4e-33
WP_011275436.1|1121262_1121736_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	57.7	2.9e-48
WP_011275437.1|1121716_1122487_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	67.1	4.3e-94
WP_053035006.1|1122551_1124144_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	86.8	6.1e-276
WP_037538587.1|1124535_1125732_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	87.2	7.2e-197
WP_049394701.1|1125826_1126735_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	79.4	8.1e-108
WP_049394687.1|1127395_1128232_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	74.7	4.8e-123
WP_049394686.1|1128297_1128651_-	CrcB family protein	NA	NA	NA	NA	NA
WP_011275444.1|1128647_1129013_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	59.3	6.9e-34
WP_011275445.1|1129105_1129411_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011275446.1|1129674_1130388_+	transaldolase	NA	M1PR54	Cyanophage	35.0	5.0e-20
WP_011275447.1|1130608_1131079_+	membrane protein	NA	A0A2H4PQT8	Staphylococcus_phage	41.2	1.7e-16
WP_011275448.1|1131062_1131509_-	competence protein ComK	NA	NA	NA	NA	NA
WP_011275449.1|1131510_1131987_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	47.4	3.6e-30
WP_011275450.1|1132243_1132465_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011275451.1|1132672_1133524_+	autolysin	NA	A0A1J0MFB0	Staphylococcus_phage	36.9	1.0e-35
WP_037571131.1|1134444_1135935_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	80.7	9.8e-18
WP_011275454.1|1136369_1137413_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	62.4	6.2e-128
WP_011275455.1|1137419_1138052_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	68.1	5.5e-79
WP_011275456.1|1138067_1139249_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	73.5	4.7e-172
WP_011275457.1|1139260_1139719_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	85.3	7.8e-59
WP_011275458.1|1139770_1140772_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	71.2	2.5e-134
WP_011275459.1|1140996_1141824_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_016931327.1|1142554_1142956_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011275461.1|1143095_1143656_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	72.4	3.3e-75
WP_011275462.1|1143652_1144612_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	85.4	1.0e-68
WP_011275463.1|1144722_1145910_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	79.2	3.9e-179
WP_011275464.1|1146208_1148623_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	86.2	0.0e+00
1148456:1148472	attR	GTTAATGGTAAAGTAAG	NA	NA	NA	NA
WP_016931328.1|1148643_1148955_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	72.8	2.8e-36
WP_138109567.1|1149181_1155652_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	29.2	4.6e-11
>prophage 3
NZ_CP035541	Staphylococcus haemolyticus strain PK-01 chromosome, complete genome	2615683	1413843	1423698	2615683		uncultured_Mediterranean_phage(28.57%)	11	NA	NA
WP_011275715.1|1413843_1414731_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	30.7	3.6e-36
WP_033079845.1|1414833_1415355_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_011275717.1|1415448_1416180_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	24.4	1.2e-08
WP_011275718.1|1416172_1416712_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	31.2	1.2e-10
WP_011275719.1|1416708_1417446_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_011275720.1|1417597_1418323_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	41.3	4.1e-46
WP_011275721.1|1418303_1420061_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	32.3	3.7e-24
WP_011275723.1|1420400_1420943_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_002449743.1|1421014_1421263_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	49.3	5.8e-16
WP_011275724.1|1421372_1422326_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011275725.1|1422318_1423698_+	ATP-dependent DNA helicase RecQ	NA	A0A0G2Y8K9	Acanthamoeba_polyphaga_mimivirus	33.3	3.8e-56
>prophage 4
NZ_CP035541	Staphylococcus haemolyticus strain PK-01 chromosome, complete genome	2615683	1739402	1808734	2615683	capsid,head,terminase,tail,holin,tRNA,portal,plate,integrase	Staphylococcus_phage(81.54%)	91	1794724:1794740	1814106:1814122
WP_016930699.1|1739402_1742153_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	27.1	3.3e-88
WP_138109606.1|1742377_1743070_-	DivIVA domain-containing protein	NA	NA	NA	NA	NA
WP_016930701.1|1743112_1743940_-	RNA-binding protein	NA	NA	NA	NA	NA
WP_011276010.1|1743973_1744264_-	YggT family protein	NA	NA	NA	NA	NA
WP_011276011.1|1744276_1744870_-	cell division protein SepF	NA	NA	NA	NA	NA
WP_011276012.1|1744881_1745550_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_011276013.1|1745648_1746440_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_011276014.1|1746672_1747854_-	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_011276015.1|1747883_1749317_-	cell division protein FtsA	NA	NA	NA	NA	NA
WP_011276016.1|1749420_1750749_-	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA	NA
WP_011276017.1|1750764_1752114_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_011276018.1|1752115_1753081_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_016930702.1|1753373_1755692_-	penicillin-binding protein	NA	NA	NA	NA	NA
WP_016930703.1|1755672_1756074_-	cell division protein FtsL	NA	NA	NA	NA	NA
WP_011276021.1|1756087_1757023_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_011276022.1|1757037_1757469_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_011276023.1|1757610_1759224_-	bacillithiol biosynthesis cysteine-adding enzyme BshC	NA	NA	NA	NA	NA
WP_011276024.1|1759414_1759858_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_011276025.1|1759940_1760633_-	noncanonical pyrimidine nucleotidase, YjjG family	NA	NA	NA	NA	NA
WP_011276026.1|1760743_1760878_-	phenol-soluble modulin PSM-beta-1	NA	NA	NA	NA	NA
WP_011276027.1|1760941_1761076_-	phenol-soluble modulin PSM-beta-2	NA	NA	NA	NA	NA
WP_011276028.1|1761132_1761267_-	phenol-soluble modulin PSM-beta-3	NA	NA	NA	NA	NA
WP_011276027.1|1761321_1761456_-	phenol-soluble modulin PSM-beta-2	NA	NA	NA	NA	NA
WP_011276028.1|1761515_1761650_-	phenol-soluble modulin PSM-beta-3	NA	NA	NA	NA	NA
WP_117276929.1|1762722_1763055_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	90.0	1.8e-49
WP_138109608.1|1763473_1764868_-	CHAP domain-containing protein	NA	A0A2H4J4H5	uncultured_Caudovirales_phage	76.9	1.1e-215
WP_049395076.1|1764868_1765129_-|holin	phage holin	holin	A0A1W6JNV9	Staphylococcus_phage	67.0	2.4e-25
WP_138109610.1|1765168_1766401_-	hypothetical protein	NA	A0A1W6JNN1	Staphylococcus_phage	50.3	3.6e-82
WP_138109612.1|1766397_1768044_-|plate	BppU family phage baseplate upper protein	plate	A0A1W6JNN2	Staphylococcus_phage	58.6	3.4e-189
WP_138109614.1|1768102_1769710_-	CHAP domain-containing protein	NA	A0A1W6JNK9	Staphylococcus_phage	90.4	1.7e-233
WP_138109761.1|1769948_1770575_-	hypothetical protein	NA	A0A1W6JQ05	Staphylococcus_phage	55.8	2.2e-48
WP_053028469.1|1770594_1770963_-	CHAP domain-containing protein	NA	H9A0P7	Staphylococcus_phage	68.9	4.4e-44
WP_049394923.1|1771016_1771409_-	hypothetical protein	NA	A0A1W6JNM7	Staphylococcus_phage	100.0	1.8e-64
WP_080351961.1|1771395_1771812_-	hypothetical protein	NA	A0A1W6JNI9	Staphylococcus_phage	100.0	5.2e-62
WP_138109616.1|1771832_1773071_-|plate	BppU family phage baseplate upper protein	plate	A0A1W6JNJ0	Staphylococcus_phage	94.2	2.6e-197
WP_138109618.1|1773083_1774958_-	DUF2817 domain-containing protein	NA	A0A1W6JNJ6	Staphylococcus_phage	94.9	0.0e+00
WP_138109620.1|1774950_1776285_-	hypothetical protein	NA	A0A1W6JNL7	Staphylococcus_phage	99.1	6.3e-250
WP_138109622.1|1776295_1777243_-|tail	phage tail family protein	tail	A0A1W6JNQ4	Staphylococcus_phage	99.4	2.0e-181
WP_138109624.1|1777254_1781031_-|tail	phage tail protein	tail	A0A1W6JNM2	Staphylococcus_phage	88.7	8.1e-186
WP_053036870.1|1781035_1781392_-	hypothetical protein	NA	A0A1W6JNM4	Staphylococcus_phage	87.6	1.0e-50
WP_138109626.1|1781433_1781799_-|tail	phage tail protein	tail	A0A1W6JNK2	Staphylococcus_phage	96.7	1.2e-57
WP_070111125.1|1781864_1782410_-|tail	phage major tail protein, TP901-1 family	tail	H9A0V7	Staphylococcus_phage	96.7	1.5e-80
WP_138109628.1|1782455_1782845_-	hypothetical protein	NA	A0A1W6JNL2	Staphylococcus_phage	87.6	5.6e-58
WP_138109629.1|1782855_1783212_-	hypothetical protein	NA	A0A1W6JNH8	Staphylococcus_phage	90.7	2.0e-54
WP_138109762.1|1783211_1783493_-	hypothetical protein	NA	A0A1W6JNI2	Staphylococcus_phage	93.5	3.6e-46
WP_053028458.1|1783510_1783840_-|head,tail	phage head-tail connector protein	head,tail	A0A1W6JNH7	Staphylococcus_phage	100.0	2.4e-54
WP_138109631.1|1783841_1784111_-	hypothetical protein	NA	A0A1W6JNK7	Staphylococcus_phage	96.6	8.7e-42
WP_037570295.1|1784134_1785064_-|capsid	phage major capsid protein	capsid	A0A1W6JNP7	Staphylococcus_phage	78.6	7.4e-141
WP_037570297.1|1785079_1785691_-	DUF4355 domain-containing protein	NA	A0A1W6JNL4	Staphylococcus_phage	93.1	1.6e-35
WP_138109633.1|1786028_1786208_-	hypothetical protein	NA	A0A1W6JNJ1	Staphylococcus_phage	96.6	1.0e-22
WP_138109635.1|1786204_1787155_-|head	phage head morphogenesis protein	head	A0A2H4IYR8	uncultured_Caudovirales_phage	86.1	3.6e-151
WP_138109637.1|1787161_1788658_-|portal	phage portal protein	portal	A0A1W6JNG9	Staphylococcus_phage	96.0	7.2e-279
WP_138109639.1|1788671_1789952_-|terminase	PBSX family phage terminase large subunit	terminase	I1W649	Staphylococcus_phage	84.7	1.2e-213
WP_138109641.1|1789944_1790385_-|terminase	terminase small subunit	terminase	A0A1J0MFQ9	Staphylococcus_phage	88.2	2.7e-64
WP_037570310.1|1790601_1791021_-	transcriptional regulator	NA	I1W651	Staphylococcus_phage	84.2	5.5e-59
WP_080365705.1|1791095_1791263_-	transcriptional regulator	NA	A0A1W6JNK3	Staphylococcus_phage	90.7	1.4e-18
WP_138109643.1|1791255_1791468_-	DUF1381 domain-containing protein	NA	A0A1W6JQI3	Staphylococcus_phage	95.6	2.1e-27
WP_138109645.1|1791487_1791808_-	hypothetical protein	NA	A0A2H4JGL4	uncultured_Caudovirales_phage	87.5	4.3e-48
WP_138109647.1|1791881_1792304_-	dUTP diphosphatase	NA	A0A1W6JQI5	Staphylococcus_phage	97.1	5.3e-70
WP_138109649.1|1792577_1792961_-	hypothetical protein	NA	A0A0D4DC71	Staphylococcus_phage	87.3	6.0e-28
WP_138109651.1|1792941_1793388_-	HNH endonuclease	NA	A0A0D4DD61	Staphylococcus_phage	99.3	1.5e-83
WP_049394860.1|1793406_1793586_-	hypothetical protein	NA	A0A1W6JQN5	Staphylococcus_phage	100.0	1.4e-24
WP_138109653.1|1793572_1793770_-	hypothetical protein	NA	A0A1W6JNI7	Staphylococcus_phage	95.2	1.7e-26
WP_138109655.1|1793766_1795047_-	DNA (cytosine-5-)-methyltransferase	NA	A0A0D4DCJ3	Staphylococcus_phage	98.8	3.4e-245
1794724:1794740	attL	TTGGATCTCTTTAATCG	NA	NA	NA	NA
WP_138109657.1|1795043_1795511_-	hypothetical protein	NA	A0A1W6JNM3	Staphylococcus_phage	92.2	3.4e-78
WP_138109763.1|1795507_1796053_-	DUF3310 domain-containing protein	NA	A0A2H4J5G4	uncultured_Caudovirales_phage	57.7	1.9e-40
WP_053021993.1|1796074_1796269_-	hypothetical protein	NA	A0A2H4JBC1	uncultured_Caudovirales_phage	95.3	7.1e-30
WP_053021992.1|1796273_1796498_-	hypothetical protein	NA	A0A2H4JE91	uncultured_Caudovirales_phage	95.9	1.7e-19
WP_053015886.1|1796647_1796842_-	hypothetical protein	NA	A0A1W6JNG1	Staphylococcus_phage	98.4	2.9e-31
WP_049396971.1|1796841_1797246_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A2H4J5E6	uncultured_Caudovirales_phage	98.5	3.5e-71
WP_138109659.1|1797263_1797668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_070111155.1|1797674_1797920_-	hypothetical protein	NA	A0A0D4DC62	Staphylococcus_phage	95.0	4.0e-38
WP_138109661.1|1797894_1798119_-	hypothetical protein	NA	H9A0Z4	Staphylococcus_phage	50.7	1.0e-16
WP_138109663.1|1798118_1799366_-	AAA family ATPase	NA	H9A0S1	Staphylococcus_phage	85.1	4.1e-203
WP_034172825.1|1799352_1799715_-	hypothetical protein	NA	H9A0S0	Staphylococcus_phage	62.6	1.1e-28
WP_138109665.1|1799721_1800516_-	DnaD domain protein	NA	I6SB74	Staphylococcus_virus	81.2	2.9e-85
WP_138109667.1|1800508_1801186_-	hypothetical protein	NA	A0A0D4DC57	Staphylococcus_phage	94.1	4.8e-121
WP_138109669.1|1801197_1801614_-	single-stranded DNA-binding protein	NA	A0A0D4DD48	Staphylococcus_phage	92.0	6.6e-65
WP_138109671.1|1801606_1802248_-	DUF1071 domain-containing protein	NA	A0A2H4J5F4	uncultured_Caudovirales_phage	91.1	3.2e-111
WP_070852473.1|1802240_1802498_-	DUF2483 family protein	NA	A0A1W6JNE4	Staphylococcus_phage	97.6	2.6e-43
WP_053024788.1|1802472_1802724_-	hypothetical protein	NA	A0A0D4DCD7	Staphylococcus_phage	100.0	2.4e-25
WP_138109673.1|1802786_1802978_-	hypothetical protein	NA	A0A1W6JQF5	Staphylococcus_phage	74.6	6.8e-17
WP_126567609.1|1802980_1803298_-	DUF771 domain-containing protein	NA	A0A2H4JAF6	uncultured_Caudovirales_phage	98.1	6.8e-54
WP_053019422.1|1803352_1803535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_053034945.1|1803882_1804422_-	hypothetical protein	NA	NA	NA	NA	NA
WP_053035437.1|1804414_1805341_-	DUF3102 domain-containing protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	76.8	3.0e-89
WP_037557781.1|1805371_1805611_-	helix-turn-helix transcriptional regulator	NA	A0A1Q1PVY0	Staphylococcus_phage	92.4	3.8e-33
WP_138109675.1|1805751_1806372_+	helix-turn-helix domain-containing protein	NA	A0A1Q1PVX8	Staphylococcus_phage	86.4	8.9e-98
WP_053024779.1|1806423_1806987_+	DUF5067 domain-containing protein	NA	A0A1W6JND4	Staphylococcus_phage	100.0	6.8e-89
WP_138109677.1|1807010_1807649_+	hypothetical protein	NA	A0A1W6JNC8	Staphylococcus_phage	92.9	4.6e-41
WP_138109679.1|1807708_1808734_+|integrase	site-specific integrase	integrase	A0A1W6JQE7	Staphylococcus_phage	96.5	9.6e-190
1814106:1814122	attR	CGATTAAAGAGATCCAA	NA	NA	NA	NA
>prophage 5
NZ_CP035541	Staphylococcus haemolyticus strain PK-01 chromosome, complete genome	2615683	1889341	1897811	2615683		Synechococcus_phage(33.33%)	9	NA	NA
WP_011276158.1|1889341_1889908_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.3	4.7e-29
WP_011276159.1|1889907_1890939_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	45.5	1.7e-69
WP_011276160.1|1890931_1892416_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.6	7.7e-47
WP_011276161.1|1892394_1894584_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.4	3.1e-137
WP_011276162.1|1894576_1895248_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_011276163.1|1895249_1895510_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_011276164.1|1895509_1896214_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	42.9	1.6e-47
WP_029376687.1|1896217_1897342_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_011276166.1|1897328_1897811_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	46.0	8.0e-22
>prophage 6
NZ_CP035541	Staphylococcus haemolyticus strain PK-01 chromosome, complete genome	2615683	2065827	2081832	2615683	terminase,integrase	uncultured_Caudovirales_phage(44.44%)	22	2060731:2060751	2078263:2078283
2060731:2060751	attL	AAATAGTGGAGACGGCGGGAG	NA	NA	NA	NA
WP_046309576.1|2065827_2066190_-	hypothetical protein	NA	I1W651	Staphylococcus_phage	44.9	8.1e-19
WP_046309578.1|2066247_2066517_-	hypothetical protein	NA	A0A2H4JBE4	uncultured_Caudovirales_phage	96.6	3.2e-44
WP_002476275.1|2066522_2067095_-|terminase	terminase small subunit	terminase	A0A2H4JBF3	uncultured_Caudovirales_phage	100.0	1.4e-102
WP_046309584.1|2067105_2067435_-	transcriptional regulator	NA	A0A2H4JEH8	uncultured_Caudovirales_phage	76.1	3.8e-39
WP_053021607.1|2067431_2067869_-	pathogenicity island protein	NA	A0A2H4JBD6	uncultured_Caudovirales_phage	86.1	1.6e-61
WP_046309589.1|2067923_2068133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_053021608.1|2068132_2068720_-	pathogenicity island protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	75.5	6.5e-74
WP_053021609.1|2068797_2069130_-	hypothetical protein	NA	A0A2H4JHK4	uncultured_Caudovirales_phage	98.2	1.2e-53
WP_053027867.1|2069491_2070076_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138109693.1|2070072_2070717_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	63.3	1.7e-75
WP_049395903.1|2070718_2071240_-	hypothetical protein	NA	NA	NA	NA	NA
WP_117276939.1|2071570_2073385_-	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	48.8	8.0e-147
WP_049395904.1|2074261_2074552_-	DUF1474 family protein	NA	A0A1W6JPG5	Staphylococcus_phage	81.4	3.1e-37
WP_049395906.1|2074566_2074773_-	hypothetical protein	NA	A0A2H4JHP9	uncultured_Caudovirales_phage	97.1	1.1e-28
WP_046309612.1|2074784_2075123_-	hypothetical protein	NA	A0A1W6JPD3	Staphylococcus_phage	59.8	4.0e-28
WP_046309615.1|2075126_2075540_-	pathogenicity island protein	NA	NA	NA	NA	NA
WP_046309617.1|2075543_2075744_-	hypothetical protein	NA	A0A2H4JD47	uncultured_Caudovirales_phage	89.4	1.0e-26
WP_138109695.1|2075756_2075975_-	helix-turn-helix transcriptional regulator	NA	B3GVX4	Streptococcus_phage	45.6	4.7e-06
WP_049395912.1|2076161_2077079_+	transcriptional regulator	NA	Q9AZH9	Lactococcus_phage	50.0	8.4e-12
WP_049395913.1|2077068_2078157_+|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	44.4	2.3e-77
WP_011276368.1|2078958_2079429_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	86.5	3.5e-70
2078263:2078283	attR	AAATAGTGGAGACGGCGGGAG	NA	NA	NA	NA
WP_138109697.1|2079453_2081832_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.1	3.6e-91
>prophage 7
NZ_CP035541	Staphylococcus haemolyticus strain PK-01 chromosome, complete genome	2615683	2133630	2147799	2615683		uncultured_Caudovirales_phage(50.0%)	12	NA	NA
WP_011276420.1|2133630_2134413_-	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	29.6	1.4e-15
WP_011276421.1|2134409_2135369_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	72.0	5.7e-11
WP_011276422.1|2135358_2136327_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	88.5	1.7e-151
WP_011276423.1|2136576_2137545_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	94.7	1.4e-177
WP_011276424.1|2137672_2139778_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	94.0	0.0e+00
WP_011276425.1|2139740_2140139_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	75.8	1.9e-53
WP_087503729.1|2140912_2141812_+	DMT family transporter	NA	NA	NA	NA	NA
WP_011276427.1|2141817_2142318_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.8	1.7e-51
WP_011276428.1|2142618_2144124_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.7	1.9e-61
WP_011276429.1|2145036_2145963_+	diacylglycerol kinase family lipid kinase	NA	NA	NA	NA	NA
WP_011276430.1|2146035_2146569_-	5'-3'-deoxyribonucleotidase	NA	A0A0A0PKY7	Bacillus_phage	39.0	8.0e-31
WP_011276431.1|2146743_2147799_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.2	2.5e-20
>prophage 8
NZ_CP035541	Staphylococcus haemolyticus strain PK-01 chromosome, complete genome	2615683	2162602	2169839	2615683		Pandoravirus(14.29%)	8	NA	NA
WP_016930964.1|2162602_2163748_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	34.9	5.4e-24
WP_011276446.1|2163731_2164325_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	40.1	7.1e-36
WP_011276447.1|2164687_2165359_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	55.9	1.4e-64
WP_011276448.1|2165360_2165780_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	26.9	2.2e-07
WP_011276449.1|2165779_2166496_+	7-carboxy-7-deazaguanine synthase QueE	NA	E7DN68	Pneumococcus_phage	41.9	1.6e-50
WP_076690076.1|2166600_2167212_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011276451.1|2167846_2168836_-	glycosyltransferase family 2 protein	NA	A8CG95	Salmonella_phage	41.2	5.3e-60
WP_011276452.1|2168999_2169839_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	44.4	3.6e-62
>prophage 9
NZ_CP035541	Staphylococcus haemolyticus strain PK-01 chromosome, complete genome	2615683	2456758	2462515	2615683	terminase,integrase	uncultured_Caudovirales_phage(83.33%)	8	2459391:2459406	2472598:2472613
WP_011276817.1|2456758_2457028_-	hypothetical protein	NA	A0A2H4JBE4	uncultured_Caudovirales_phage	94.4	1.0e-42
WP_011276818.1|2457033_2457606_-|terminase	terminase small subunit	terminase	A0A2H4JBF3	uncultured_Caudovirales_phage	95.3	2.1e-98
WP_011276819.1|2457607_2457946_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JEH8	uncultured_Caudovirales_phage	82.1	8.9e-44
WP_011276820.1|2457942_2458392_-	hypothetical protein	NA	A0A2H4JBD6	uncultured_Caudovirales_phage	86.4	3.9e-63
WP_119881013.1|2458621_2459842_+	SAP domain-containing protein	NA	NA	NA	NA	NA
2459391:2459406	attL	ATATTTATTTGTATTT	NA	NA	NA	NA
WP_016931194.1|2460515_2460710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_100208220.1|2461013_2461193_+	hypothetical protein	NA	A0A2H4JA11	uncultured_Caudovirales_phage	56.0	2.0e-10
WP_011276827.1|2461300_2462515_+|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	46.1	1.4e-91
2472598:2472613	attR	AAATACAAATAAATAT	NA	NA	NA	NA
>prophage 10
NZ_CP035541	Staphylococcus haemolyticus strain PK-01 chromosome, complete genome	2615683	2530383	2579265	2615683	transposase	Staphylococcus_phage(46.15%)	42	NA	NA
WP_016931271.1|2530383_2531058_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	92.4	8.1e-121
WP_138109733.1|2531054_2531558_-	GNAT family N-acetyltransferase	NA	A0A1B0RXL7	Streptococcus_phage	98.6	4.0e-72
WP_001105960.1|2532330_2533005_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	97.3	1.7e-126
WP_000505741.1|2533034_2533238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000369394.1|2533251_2533989_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000793446.1|2533981_2534911_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	42.2	1.0e-41
WP_000866106.1|2535904_2536579_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001105960.1|2536664_2537339_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	97.3	1.7e-126
WP_002380758.1|2538805_2539213_+	Hg(II)-responsive transcriptional regulator MerR	NA	NA	NA	NA	NA
WP_000746201.1|2539229_2539583_+	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_002380761.1|2540384_2540732_+	mercury transporter	NA	NA	NA	NA	NA
WP_012818079.1|2540789_2542433_+	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.4	1.7e-50
WP_000790334.1|2542514_2543165_+	organomercurial lyase MerB	NA	NA	NA	NA	NA
WP_001802816.1|2543167_2543350_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001105986.1|2543718_2544393_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	1.5e-127
WP_138109735.1|2544422_2545364_-	protein rep	NA	NA	NA	NA	NA
WP_000119405.1|2545640_2546903_-	plasmid recombination protein	NA	NA	NA	NA	NA
WP_001242578.1|2547409_2547814_-	bleomycin binding protein	NA	NA	NA	NA	NA
WP_001795128.1|2548030_2548801_-	aminoglycoside O-nucleotidyltransferase ANT(4')-Ia	NA	NA	NA	NA	NA
WP_001105986.1|2549043_2549718_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	1.5e-127
WP_138109736.1|2549801_2550020_+	hypothetical protein	NA	E9LUK4	Lactobacillus_phage	42.9	1.2e-09
WP_002497230.1|2550176_2550278_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_138109737.1|2550412_2551279_-	DNA adenine methylase	NA	NA	NA	NA	NA
WP_138109738.1|2551294_2553007_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_016931397.1|2554130_2554589_+	DUF1307 domain-containing protein	NA	NA	NA	NA	NA
WP_016931398.1|2555269_2555371_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_083297561.1|2555601_2556201_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.9	5.7e-25
WP_049426552.1|2556200_2557343_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	27.2	1.9e-13
WP_016931400.1|2557418_2557835_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016931401.1|2557851_2558799_+	cation transporter	NA	NA	NA	NA	NA
WP_016931402.1|2559070_2559589_-	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_053020041.1|2559677_2560313_-	3-hexulose-6-phosphate synthase	NA	NA	NA	NA	NA
WP_053023833.1|2560414_2560765_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_138109739.1|2560969_2562466_+	malate dehydrogenase (quinone)	NA	NA	NA	NA	NA
WP_100208223.1|2562484_2562586_+	DUF2648 domain-containing protein	NA	NA	NA	NA	NA
WP_033080167.1|2563704_2564127_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033080168.1|2564328_2565459_+	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
WP_033080169.1|2565808_2567302_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_000664727.1|2571335_2571812_-	replication/maintenance protein RepL	NA	NA	NA	NA	NA
WP_001003263.1|2572259_2572994_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(C)	NA	E4ZFQ0	Streptococcus_phage	50.4	2.1e-61
WP_002497446.1|2573054_2573114_-	23S rRNA methylase leader peptide ErmCL	NA	NA	NA	NA	NA
WP_138109740.1|2577669_2579265_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	79.3	1.2e-239
