assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_005705815.1_ASM570581v1	NZ_CP039160	Staphylococcus aureus strain Lr6 chromosome, complete genome	1	344460-344560	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|128aa|up_8|NZ_CP039160.1_337065_337449_-,NA|98aa|up_6|NZ_CP039160.1_338403_338697_-,NA|34aa|up_1|NZ_CP039160.1_343684_343786_+,NA|86aa|up_0|NZ_CP039160.1_343993_344251_-,NA|221aa|down_1|NZ_CP039160.1_345650_346313_-,NA|131aa|down_8|NZ_CP039160.1_354534_354927_-,NA|74aa|down_9|NZ_CP039160.1_354948_355170_-	NA|194aa|up_9|NZ_CP039160.1_336418_337000_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_8|NZ_CP039160.1_337065_337449_-	NA	NA|209aa|up_7|NZ_CP039160.1_337704_338331_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_6|NZ_CP039160.1_338403_338697_-	NA	NA|508aa|up_5|NZ_CP039160.1_338775_340299_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|NZ_CP039160.1_340314_340884_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|NZ_CP039160.1_341375_342131_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|NZ_CP039160.1_342211_343600_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_1|NZ_CP039160.1_343684_343786_+	NA	NA|86aa|up_0|NZ_CP039160.1_343993_344251_-	NA	NA|319aa|down_0|NZ_CP039160.1_344576_345533_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP039160.1_345650_346313_-	NA	NA|136aa|down_2|NZ_CP039160.1_346455_346863_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP039160.1_347375_347954_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP039160.1_347953_349222_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP039160.1_349259_350726_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP039160.1_350750_352292_+	PRK00074, guaA, GMP synthase; Reviewed	NA|369aa|down_7|NZ_CP039160.1_352803_353910_+	pfam07751, Abi_2, Abi-like protein	NA|131aa|down_8|NZ_CP039160.1_354534_354927_-	NA	NA|74aa|down_9|NZ_CP039160.1_354948_355170_-	NA
GCF_005705815.1_ASM570581v1	NZ_CP039160	Staphylococcus aureus strain Lr6 chromosome, complete genome	2	581286-581378	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|97aa|up_1|NZ_CP039160.1_580114_580405_-,NA|169aa|down_4|NZ_CP039160.1_585125_585632_+,NA|239aa|down_5|NZ_CP039160.1_585793_586510_+	NA|313aa|up_9|NZ_CP039160.1_572032_572971_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP039160.1_573181_573718_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP039160.1_573886_574363_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP039160.1_574402_575698_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP039160.1_575725_576247_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP039160.1_576747_577758_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|128aa|up_3|NZ_CP039160.1_578066_578450_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_2|NZ_CP039160.1_578446_580108_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|97aa|up_1|NZ_CP039160.1_580114_580405_-	NA	NA|212aa|up_0|NZ_CP039160.1_580498_581134_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|NZ_CP039160.1_581506_582334_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP039160.1_582481_583432_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP039160.1_583486_584206_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP039160.1_584189_584990_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP039160.1_585125_585632_+	NA	NA|239aa|down_5|NZ_CP039160.1_585793_586510_+	NA	NA|263aa|down_6|NZ_CP039160.1_586678_587467_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP039160.1_587717_588092_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP039160.1_589039_589969_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP039160.1_590162_590387_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_005705815.1_ASM570581v1	NZ_CP039160	Staphylococcus aureus strain Lr6 chromosome, complete genome	3	796021-796102	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|NZ_CP039160.1_794923_795037_+,NA	NA|206aa|up_9|NZ_CP039160.1_789778_790396_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP039160.1_790550_791045_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP039160.1_791443_791866_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP039160.1_792013_792730_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP039160.1_792812_793352_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP039160.1_793501_793822_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP039160.1_793965_794322_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP039160.1_794479_794860_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP039160.1_794923_795037_+	NA	NA|293aa|up_0|NZ_CP039160.1_795038_795917_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP039160.1_796658_797045_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP039160.1_797037_797334_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP039160.1_797583_798609_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP039160.1_798601_799297_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP039160.1_799313_800135_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP039160.1_800488_800683_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP039160.1_800916_801768_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP039160.1_802095_802857_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP039160.1_802955_804263_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|NZ_CP039160.1_804377_805619_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_005705815.1_ASM570581v1	NZ_CP039160	Staphylococcus aureus strain Lr6 chromosome, complete genome	4	1635102-1635185	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGGCCCCATCCCCAACTT	24	1	1	1635126-1635161	NZ_CP039160.1_1600732-1600767	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|49aa|down_3|NZ_CP039160.1_1639189_1639336_-,NA|43aa|down_8|NZ_CP039160.1_1642372_1642501_-	NA|208aa|up_9|NZ_CP039160.1_1623835_1624459_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|423aa|up_8|NZ_CP039160.1_1624458_1625727_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_7|NZ_CP039160.1_1625738_1626662_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_6|NZ_CP039160.1_1626664_1627303_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_5|NZ_CP039160.1_1627587_1627896_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_4|NZ_CP039160.1_1627910_1628339_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|87aa|up_3|NZ_CP039160.1_1628342_1628603_-	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|877aa|up_2|NZ_CP039160.1_1628665_1631296_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|NZ_CP039160.1_1631638_1634116_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|NZ_CP039160.1_1634117_1634786_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NZ_CP039160.1_1635366_1636485_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|NZ_CP039160.1_1636485_1637628_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|338aa|down_2|NZ_CP039160.1_1637939_1638953_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|49aa|down_3|NZ_CP039160.1_1639189_1639336_-	NA	NA|61aa|down_4|NZ_CP039160.1_1639375_1639558_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_5|NZ_CP039160.1_1639657_1640080_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_6|NZ_CP039160.1_1640164_1641439_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_7|NZ_CP039160.1_1641599_1642373_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|43aa|down_8|NZ_CP039160.1_1642372_1642501_-	NA	NA|589aa|down_9|NZ_CP039160.1_1642833_1644600_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated
GCF_005705815.1_ASM570581v1	NZ_CP039160	Staphylococcus aureus strain Lr6 chromosome, complete genome	5	1882450-1882715	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGCAAGTTGGCGGGGCCACAACATAGANAAATTGGATN	38	2	2	1882543-1882565|1882603-1882622	NZ_CP039160.1_845037-845059|NZ_CP039160.1_1882774-1882793	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|33aa|up_8|NZ_CP039160.1_1873689_1873788_-,NA|132aa|up_0|NZ_CP039160.1_1881752_1882148_-,NA|51aa|down_0|NZ_CP039160.1_1883039_1883192_-	NA|399aa|up_9|NZ_CP039160.1_1872202_1873399_-	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|33aa|up_8|NZ_CP039160.1_1873689_1873788_-	NA	NA|115aa|up_7|NZ_CP039160.1_1874436_1874781_-	PRK13676, PRK13676, YlbF/YmcA family competence regulator	NA|375aa|up_6|NZ_CP039160.1_1874849_1875974_-	COG4399, COG4399, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_5|NZ_CP039160.1_1876152_1876617_-	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|208aa|up_4|NZ_CP039160.1_1876972_1877596_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|371aa|up_3|NZ_CP039160.1_1877617_1878730_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|274aa|up_2|NZ_CP039160.1_1878892_1879714_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_1|NZ_CP039160.1_1880171_1881557_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_0|NZ_CP039160.1_1881752_1882148_-	NA	NA|51aa|down_0|NZ_CP039160.1_1883039_1883192_-	NA	NA|200aa|down_1|NZ_CP039160.1_1883216_1883816_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|down_2|NZ_CP039160.1_1883973_1884444_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|381aa|down_3|NZ_CP039160.1_1884448_1885591_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|down_4|NZ_CP039160.1_1885726_1886455_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|down_5|NZ_CP039160.1_1886441_1887899_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|down_6|NZ_CP039160.1_1888157_1889219_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_7|NZ_CP039160.1_1893079_1893526_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_8|NZ_CP039160.1_1893622_1894573_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_9|NZ_CP039160.1_1894578_1895034_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
GCF_005705815.1_ASM570581v1	NZ_CP039160	Staphylococcus aureus strain Lr6 chromosome, complete genome	6	2118403-2118483	5	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP039160.1_2113277_2113508_-,NA|364aa|up_0|NZ_CP039160.1_2117294_2118386_+,NA|35aa|down_0|NZ_CP039160.1_2118818_2118923_-,NA|61aa|down_1|NZ_CP039160.1_2119355_2119538_-,NA|53aa|down_2|NZ_CP039160.1_2119602_2119761_+,NA|31aa|down_3|NZ_CP039160.1_2120197_2120290_+	NA|237aa|up_9|NZ_CP039160.1_2108888_2109599_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP039160.1_2109719_2110163_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP039160.1_2110362_2110776_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP039160.1_2111232_2112606_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP039160.1_2113277_2113508_-	NA	NA|313aa|up_4|NZ_CP039160.1_2113538_2114477_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP039160.1_2114912_2115578_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP039160.1_2115729_2116050_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP039160.1_2116051_2117029_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP039160.1_2117294_2118386_+	NA	NA|35aa|down_0|NZ_CP039160.1_2118818_2118923_-	NA	NA|61aa|down_1|NZ_CP039160.1_2119355_2119538_-	NA	NA|53aa|down_2|NZ_CP039160.1_2119602_2119761_+	NA	NA|31aa|down_3|NZ_CP039160.1_2120197_2120290_+	NA	NA|286aa|down_4|NZ_CP039160.1_2120418_2121276_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_5|NZ_CP039160.1_2121343_2122126_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_6|NZ_CP039160.1_2122357_2124163_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_7|NZ_CP039160.1_2124843_2126382_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_8|NZ_CP039160.1_2126416_2128549_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_9|NZ_CP039160.1_2128560_2128995_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]
GCF_005705815.1_ASM570581v1	NZ_CP039160	Staphylococcus aureus strain Lr6 chromosome, complete genome	7	2130724-2130809	6	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|61aa|up_9|NZ_CP039160.1_2119355_2119538_-,NA|53aa|up_8|NZ_CP039160.1_2119602_2119761_+,NA|31aa|up_7|NZ_CP039160.1_2120197_2120290_+,NA	NA|61aa|up_9|NZ_CP039160.1_2119355_2119538_-	NA	NA|53aa|up_8|NZ_CP039160.1_2119602_2119761_+	NA	NA|31aa|up_7|NZ_CP039160.1_2120197_2120290_+	NA	NA|286aa|up_6|NZ_CP039160.1_2120418_2121276_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP039160.1_2121343_2122126_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP039160.1_2122357_2124163_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP039160.1_2124843_2126382_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP039160.1_2126416_2128549_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP039160.1_2128560_2128995_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP039160.1_2128994_2130101_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP039160.1_2138142_2139498_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP039160.1_2139524_2140457_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP039160.1_2140458_2141268_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP039160.1_2141456_2142365_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP039160.1_2148170_2149235_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP039160.1_2149382_2150825_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP039160.1_2151147_2151621_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP039160.1_2151719_2153063_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP039160.1_2153239_2153923_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP039160.1_2153941_2155129_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_005705815.1_ASM570581v1	NZ_CP039160	Staphylococcus aureus strain Lr6 chromosome, complete genome	8	2231715-2231907	2,7	CRT,CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA,TCTATGTTGGGGCCCCGCCAACTTG	23,25	3	21	2231793-2231828|2231793-2231828|2231793-2231828|2231852-2231884|2231852-2231884|2231852-2231884|2231852-2231884|2231852-2231884|2231852-2231884|2231852-2231884|2231850-2231880|2231850-2231880|2231850-2231880|2231850-2231880|2231850-2231880|2231850-2231880|2231850-2231880|2231850-2231880|2231850-2231880|2231850-2231880|2231850-2231880	NZ_CP039160.1_1062530-1062495|NZ_CP039160.1_1782073-1782038|NZ_CP039160.1_1600674-1600709|NZ_CP039160.1_2220935-2220967|NZ_CP039160.1_2506336-2506368|NZ_CP039160.1_1271138-1271106|NZ_CP039160.1_165058-165090|NZ_CP039160.1_750929-750961|NZ_CP039160.1_796360-796392|NZ_CP039160.1_1919143-1919175|NZ_CP039160.1_961128-961158|NZ_CP039160.1_1600733-1600763|NZ_CP039160.1_2220933-2220963|NZ_CP039160.1_2506334-2506364|NZ_CP039160.1_305842-305812|NZ_CP039160.1_1271140-1271110|NZ_CP039160.1_165056-165086|NZ_CP039160.1_750927-750957|NZ_CP039160.1_796358-796388|NZ_CP039160.1_1919141-1919171|NZ_CP039160.1_230589-230559	NA:NA	3,1	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP039160.1_2222242_2222407_+,NA|106aa|up_8|NZ_CP039160.1_2222651_2222969_+,NA|84aa|up_5|NZ_CP039160.1_2228093_2228345_+,NA|62aa|up_0|NZ_CP039160.1_2231484_2231670_+,NA	NA|55aa|up_9|NZ_CP039160.1_2222242_2222407_+	NA	NA|106aa|up_8|NZ_CP039160.1_2222651_2222969_+	NA	NA|1056aa|up_7|NZ_CP039160.1_2223155_2226323_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP039160.1_2226439_2227705_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP039160.1_2228093_2228345_+	NA	NA|255aa|up_4|NZ_CP039160.1_2228336_2229101_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP039160.1_2229262_2229703_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP039160.1_2229695_2230907_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP039160.1_2231008_2231359_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP039160.1_2231484_2231670_+	NA	NA|341aa|down_0|NZ_CP039160.1_2232048_2233071_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP039160.1_2233090_2233690_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP039160.1_2233696_2233930_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP039160.1_2233935_2234382_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP039160.1_2234395_2234881_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP039160.1_2234877_2236137_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP039160.1_2236199_2236694_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP039160.1_2236695_2237202_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP039160.1_2237232_2238237_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP039160.1_2238406_2239012_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_005705815.1_ASM570581v1	NZ_CP039160	Staphylococcus aureus strain Lr6 chromosome, complete genome	9	2382193-2382290	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTTCTGCGAATTTTATGAGCTAGAAAGGC	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|35aa|up_2|NZ_CP039160.1_2379915_2380020_+,NA|35aa|down_0|NZ_CP039160.1_2382483_2382588_-,NA|61aa|down_2|NZ_CP039160.1_2384214_2384397_-	NA|200aa|up_9|NZ_CP039160.1_2373392_2373992_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|up_8|NZ_CP039160.1_2374010_2374373_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|up_7|NZ_CP039160.1_2374627_2375878_+	pfam02388, FemAB, FemAB family	NA|244aa|up_6|NZ_CP039160.1_2375974_2376706_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_5|NZ_CP039160.1_2376702_2377422_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_4|NZ_CP039160.1_2377402_2378182_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|480aa|up_3|NZ_CP039160.1_2378302_2379742_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|35aa|up_2|NZ_CP039160.1_2379915_2380020_+	NA	NA|229aa|up_1|NZ_CP039160.1_2380173_2380860_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|NZ_CP039160.1_2381186_2382053_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|35aa|down_0|NZ_CP039160.1_2382483_2382588_-	NA	NA|438aa|down_1|NZ_CP039160.1_2382682_2383996_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|61aa|down_2|NZ_CP039160.1_2384214_2384397_-	NA	NA|310aa|down_3|NZ_CP039160.1_2384531_2385461_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_4|NZ_CP039160.1_2386289_2387237_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_5|NZ_CP039160.1_2387238_2388216_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|down_6|NZ_CP039160.1_2388267_2388735_-	pfam06177, QueT, QueT transporter	NA|231aa|down_7|NZ_CP039160.1_2388745_2389438_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|down_8|NZ_CP039160.1_2389448_2390564_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|down_9|NZ_CP039160.1_2390541_2391549_-	PRK06256, PRK06256, biotin synthase; Validated
