The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP039160	Staphylococcus aureus strain Lr6 chromosome, complete genome	2782298	675742	683562	2782298		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|675742_676798_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|676797_677484_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|677458_677932_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093562.1|678273_678714_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|678993_679578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|679676_680390_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|680393_680813_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|680814_681483_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|681833_682427_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_138079880.1|682410_683562_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	1.2e-23
>prophage 2
NZ_CP039160	Staphylococcus aureus strain Lr6 chromosome, complete genome	2782298	695534	709876	2782298		uncultured_Caudovirales_phage(50.0%)	16	NA	NA
WP_000663037.1|695534_696593_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.3	1.5e-20
WP_000197271.1|696887_697430_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429006.1|698054_698972_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_031797439.1|699061_699163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|699240_700746_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_001837858.1|700811_701057_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000930014.1|701086_701587_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|701606_702473_-	DMT family transporter	NA	NA	NA	NA	NA
WP_001790091.1|702857_703124_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000692521.1|703273_703672_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|703634_705740_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|705857_706829_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|707009_707165_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|707203_708175_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|708161_709118_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616840.1|709114_709876_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 3
NZ_CP039160	Staphylococcus aureus strain Lr6 chromosome, complete genome	2782298	760639	775248	2782298	integrase	Staphylococcus_phage(76.92%)	17	760562:760576	765703:765717
760562:760576	attL	GAAGATATTTATCAA	NA	NA	NA	NA
WP_001050043.1|760639_763012_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.0	1.7e-93
WP_001085185.1|763033_763498_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
WP_000149511.1|764060_765167_-|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	44.4	1.1e-77
WP_000358990.1|765156_765960_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JC02	uncultured_Caudovirales_phage	55.9	5.3e-10
765703:765717	attR	TTGATAAATATCTTC	NA	NA	NA	NA
WP_001045296.1|766095_766299_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_000163544.1|766334_766553_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000784885.1|766564_766711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058492.1|766703_766913_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	95.7	7.7e-30
WP_001103939.1|766915_767233_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	57.0	3.2e-19
WP_001002717.1|767296_768166_+	hypothetical protein	NA	A0A1W6JQL5	Staphylococcus_phage	95.8	8.7e-160
WP_000390453.1|768182_769640_+	hypothetical protein	NA	A0A1W6JQD6	Staphylococcus_phage	95.9	6.6e-277
WP_001039170.1|769940_770303_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	98.3	3.4e-65
WP_000998185.1|770304_770589_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	98.9	7.7e-49
WP_001019807.1|770585_771227_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	92.0	5.5e-111
WP_001288441.1|771936_772281_+	hypothetical protein	NA	A0A1W6JQF3	Staphylococcus_phage	100.0	1.4e-57
WP_000999094.1|773620_774235_+	stage II sporulation protein M	NA	NA	NA	NA	NA
WP_000757402.1|774519_775248_-	DUF5067 domain-containing protein	NA	H9A0X8	Staphylococcus_phage	36.8	1.4e-17
>prophage 4
NZ_CP039160	Staphylococcus aureus strain Lr6 chromosome, complete genome	2782298	962638	971111	2782298		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|962638_963121_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010413.1|963107_964232_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|964235_964940_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|964939_965203_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666806.1|965204_965876_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032733.1|965868_968058_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	2.7e-141
WP_000483713.1|968036_969521_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_138079889.1|969513_970542_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	7.6e-62
WP_000238659.1|970544_971111_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.7	3.2e-30
>prophage 5
NZ_CP039160	Staphylococcus aureus strain Lr6 chromosome, complete genome	2782298	1431626	1515670	2782298	portal,tRNA,capsid,tail,head,integrase,terminase,holin,protease	Staphylococcus_phage(83.54%)	105	1457437:1457452	1519826:1519841
WP_000858792.1|1431626_1432919_-|tRNA	asparagine--tRNA ligase	tRNA	M1PB22	Moumouvirus	31.1	1.9e-54
WP_000525081.1|1433240_1435934_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049916.1|1435957_1436929_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361552.1|1436915_1438118_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.3	1.9e-35
WP_000690027.1|1438122_1439265_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|1439506_1439824_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1440160_1440841_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000154678.1|1440912_1441500_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000005212.1|1441489_1442065_-	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.1e-08
WP_000389533.1|1442078_1443323_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_000245902.1|1443329_1444628_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776308.1|1444637_1445702_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269921.1|1445727_1446894_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	31.8	5.8e-34
WP_000789522.1|1447280_1447481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442480.1|1447689_1448139_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_078064940.1|1448230_1449175_-	heptaprenyl diphosphate synthase	NA	A0A1V0SE37	Indivirus	24.4	7.3e-11
WP_000774684.1|1449191_1449917_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450555.1|1449919_1450492_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1450922_1451195_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161743.1|1451365_1452364_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165530.1|1452380_1453691_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133954.1|1453912_1455088_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_000644391.1|1455785_1456445_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681749.1|1456521_1457490_+	asparaginase	NA	NA	NA	NA	NA
1457437:1457452	attL	GCGTTAAGCAACAATT	NA	NA	NA	NA
WP_001174260.1|1457604_1458591_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_031867547.1|1458751_1458868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069296.1|1458992_1460453_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902108.1|1460605_1461985_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	4.9e-56
WP_001163809.1|1461974_1462928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001151997.1|1463035_1463284_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186912.1|1463389_1463935_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_000476340.1|1464344_1465259_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476881.1|1465315_1466233_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001837492.1|1466290_1467196_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_061390271.1|1467286_1467538_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.4e-25
WP_024937002.1|1467720_1468704_-	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
WP_000239544.1|1468699_1469638_-	Panton-Valentine bi-component leukocidin subunit S	NA	A0A2I6PF61	Staphylococcus_phage	100.0	1.7e-180
WP_000909197.1|1470027_1471482_-	CHAP domain-containing protein	NA	A0A068A229	Staphylococcus_phage	100.0	1.5e-289
WP_000992284.1|1471492_1471795_-|holin	phage holin	holin	A0A068A215	Staphylococcus_phage	100.0	5.3e-48
WP_031867548.1|1471845_1471953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_073391028.1|1471961_1472183_-|holin	putative holin-like toxin	holin	A0A068A202	Staphylococcus_phage	100.0	1.9e-23
WP_000750407.1|1472291_1473065_-	staphylococcal enterotoxin type A	NA	A0A068A244	Staphylococcus_phage	100.0	1.7e-146
WP_000340977.1|1473485_1473860_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001262620.1|1473915_1474203_-	hypothetical protein	NA	C5I682	Staphylococcus_phage	100.0	9.9e-44
WP_001000058.1|1474248_1474401_-	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_000582187.1|1474393_1478176_-	hypothetical protein	NA	A0A068A201	Staphylococcus_phage	100.0	0.0e+00
WP_000567390.1|1478191_1479676_-|tail	phage tail protein	tail	A0A068A242	Staphylococcus_phage	100.0	1.5e-297
WP_000504562.1|1479672_1484217_-|tail	phage tail tape measure protein	tail	A0A068A2C9	Staphylococcus_phage	100.0	0.0e+00
WP_001096355.1|1484461_1484812_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|1484861_1485086_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268740.1|1485127_1485772_-|tail	phage tail protein	tail	G4KNQ7	Staphylococcus_phage	100.0	6.5e-120
WP_000565498.1|1485772_1486180_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114226.1|1486176_1486581_-	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
WP_000755150.1|1486577_1486940_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000150936.1|1486923_1487208_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|1487197_1487482_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|1487501_1488647_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642726.1|1488670_1489408_-|protease	Clp protease ClpP	protease	A0A068A225	Staphylococcus_phage	100.0	1.8e-129
WP_000025277.1|1489391_1490579_-|portal	phage portal protein	portal	A0A068A211	Staphylococcus_phage	100.0	3.9e-219
WP_000625088.1|1490594_1492256_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|1492252_1492597_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|1492727_1493027_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|1493258_1493675_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000265042.1|1493702_1493903_-	DUF1514 family protein	NA	A0A2I6PDJ9	Staphylococcus_phage	100.0	1.4e-28
WP_000595265.1|1493902_1494052_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000592207.1|1494048_1494435_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000195803.1|1494431_1494638_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_001282074.1|1494634_1494880_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000185660.1|1494916_1495459_-	dUTP pyrophosphatase	NA	A0A068A209	Staphylococcus_phage	100.0	1.1e-96
WP_000028422.1|1495451_1495634_-	hypothetical protein	NA	A0EWY1	Staphylococcus_phage	100.0	2.6e-26
WP_001837494.1|1495623_1495875_-	DUF1024 family protein	NA	A0A068A237	Staphylococcus_phage	100.0	1.4e-38
WP_001105620.1|1495867_1496152_-	hypothetical protein	NA	A0A2I6PDI3	Staphylococcus_phage	100.0	9.4e-47
WP_000982708.1|1496148_1496598_-	hypothetical protein	NA	A0A2I6PDH2	Staphylococcus_phage	100.0	9.3e-81
WP_000131386.1|1496662_1496905_-	hypothetical protein	NA	A0A068A208	Staphylococcus_phage	100.0	3.0e-41
WP_000029376.1|1496908_1497265_-	hypothetical protein	NA	A0A0F6N3E3	Staphylococcus_phage	100.0	6.5e-61
WP_001187245.1|1497265_1497451_-	DUF3113 family protein	NA	A0A068A236	Staphylococcus_phage	100.0	2.4e-27
WP_000049795.1|1497455_1497860_-	DUF1064 domain-containing protein	NA	A0A068A2B2	Staphylococcus_phage	100.0	9.6e-69
WP_001123695.1|1497869_1498091_-	DUF3269 family protein	NA	A0A0H3U2V4	Staphylococcus_phage	100.0	2.2e-35
WP_000256597.1|1498104_1498263_-	hypothetical protein	NA	Q4ZBL5	Staphylococcus_phage	100.0	3.4e-22
WP_000803063.1|1498256_1499036_-	ATP-binding protein	NA	A0A068A1Z4	Staphylococcus_phage	100.0	2.9e-146
WP_000190254.1|1499045_1499816_-	hypothetical protein	NA	G4KNP0	Staphylococcus_phage	100.0	6.4e-122
WP_000414755.1|1499881_1500163_+	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_001199422.1|1500301_1500973_-	hypothetical protein	NA	A0A068A206	Staphylococcus_phage	100.0	4.4e-127
WP_000704705.1|1500985_1501537_-	single-stranded DNA-binding protein	NA	Q4ZBM4	Staphylococcus_phage	100.0	3.4e-101
WP_000134097.1|1501565_1502354_-	ATP-binding protein	NA	Q4ZBM5	Staphylococcus_phage	100.0	2.6e-142
WP_000815403.1|1502346_1502568_-	DUF2483 domain-containing protein	NA	A0A1X9H047	Staphylococcus_phage	100.0	1.2e-33
WP_000291066.1|1502577_1502838_-	DUF1108 family protein	NA	A0A068A219	Staphylococcus_phage	100.0	8.9e-44
WP_000219665.1|1502929_1503250_-	hypothetical protein	NA	A0A068A205	Staphylococcus_phage	100.0	1.6e-55
WP_001285950.1|1503250_1503418_-	DUF1270 domain-containing protein	NA	A0A068A1Z2	Staphylococcus_phage	100.0	4.7e-22
WP_001124198.1|1503429_1503693_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001038398.1|1503722_1503941_-	hypothetical protein	NA	A0A068A2A3	Staphylococcus_phage	100.0	8.6e-32
WP_001025595.1|1503937_1504264_-	hypothetical protein	NA	G4KNN2	Staphylococcus_phage	100.0	5.4e-54
WP_000435343.1|1504497_1504758_-	hypothetical protein	NA	A0A2I6PDT7	Staphylococcus_phage	100.0	3.5e-40
WP_001148574.1|1504770_1505568_-	phage antirepressor Ant	NA	A0A068A1Z1	Staphylococcus_phage	100.0	1.7e-146
WP_000639925.1|1505583_1505826_-	DUF739 family protein	NA	A0A2I6PDH8	Staphylococcus_phage	100.0	2.8e-39
WP_001083970.1|1505989_1506706_+	helix-turn-helix domain-containing protein	NA	A0A068A299	Staphylococcus_phage	100.0	5.4e-131
WP_000037409.1|1506723_1507167_+	hypothetical protein	NA	A0A068A217	Staphylococcus_phage	100.0	1.1e-49
WP_001089803.1|1507339_1507525_+	hypothetical protein	NA	A0A068A1Z0	Staphylococcus_phage	100.0	3.0e-25
WP_000477304.1|1507582_1507786_-	hypothetical protein	NA	A0A068A231	Staphylococcus_phage	100.0	2.2e-29
WP_000683724.1|1507813_1508695_+	hypothetical protein	NA	A0A068A296	Staphylococcus_phage	100.0	2.1e-140
WP_000264740.1|1508772_1509978_+|integrase	site-specific integrase	integrase	A0A068A216	Staphylococcus_phage	100.0	5.9e-223
WP_001829176.1|1510020_1512048_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	92.5	1.6e-108
WP_001793476.1|1512059_1512968_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987769.1|1513212_1514964_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
WP_000064078.1|1514944_1515670_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
1519826:1519841	attR	AATTGTTGCTTAACGC	NA	NA	NA	NA
>prophage 6
NZ_CP039160	Staphylococcus aureus strain Lr6 chromosome, complete genome	2782298	1572295	1580607	2782298	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213907.1|1572295_1573081_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.7e-19
WP_000924214.1|1573206_1574097_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062177.1|1574106_1575453_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_001837509.1|1575566_1576667_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	6.8e-08
WP_000624568.1|1576669_1577347_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1577477_1578584_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217262.1|1578807_1580607_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	1.0e-53
>prophage 7
NZ_CP039160	Staphylococcus aureus strain Lr6 chromosome, complete genome	2782298	1650291	1659334	2782298	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1650291_1650810_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595011.1|1650831_1653105_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
WP_000749794.1|1653307_1655587_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	4.8e-32
WP_001160682.1|1655861_1656122_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1656140_1657280_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1657302_1658328_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005768.1|1658329_1659334_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 8
NZ_CP039160	Staphylococcus aureus strain Lr6 chromosome, complete genome	2782298	1787157	1799892	2782298	tRNA	Staphylococcus_phage(100.0%)	6	NA	NA
WP_138079905.1|1787157_1793718_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	97.1	9.2e-302
WP_000836465.1|1794043_1794355_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001789004.1|1794376_1796800_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.7	0.0e+00
WP_001025061.1|1797087_1798269_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526544.1|1798378_1799332_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	1.1e-78
WP_000764423.1|1799328_1799892_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	100.0	2.2e-103
>prophage 9
NZ_CP039160	Staphylococcus aureus strain Lr6 chromosome, complete genome	2782298	1803051	1834976	2782298	protease	Staphylococcus_phage(90.32%)	36	NA	NA
WP_001196354.1|1803051_1804053_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1804174_1804639_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159035.1|1804651_1805833_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	100.0	1.7e-227
WP_000493888.1|1805843_1806476_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	100.0	3.4e-113
WP_000384179.1|1806482_1807514_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	3.4e-195
WP_001261670.1|1808006_1809509_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221178.1|1810293_1810608_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	99.0	5.7e-53
WP_000989125.1|1810607_1811900_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	98.6	6.1e-226
WP_000163235.1|1811917_1812313_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_001032833.1|1812869_1813724_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1813999_1814224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671044.1|1814422_1814893_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	97.4	3.3e-81
WP_001153742.1|1815005_1815449_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1815435_1815879_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168910.1|1816174_1816810_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1817248_1817962_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1818221_1818524_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200544.1|1818779_1819145_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	1.1e-58
WP_000623471.1|1819141_1819495_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_010956645.1|1819686_1819866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000453311.1|1819877_1820711_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	2.7e-158
WP_000366163.1|1820922_1821831_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933828.1|1821955_1823149_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	7.4e-218
WP_000109897.1|1823520_1825113_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_002868962.1|1825365_1826112_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000672014.1|1826116_1826590_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1826655_1826913_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778508.1|1826909_1827911_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	96.7	3.4e-184
WP_000348353.1|1827915_1829394_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	5.3e-282
WP_072460539.1|1829552_1830008_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	1.0e-79
WP_001829077.1|1830310_1830961_+	hypothetical protein	NA	A0A2H4PQM8	Staphylococcus_phage	98.1	8.8e-56
WP_000070645.1|1831041_1832037_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
WP_000669025.1|1832111_1832738_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	91.2	1.1e-71
WP_025174796.1|1832782_1833508_+	enterotoxin	NA	A0EX09	Staphylococcus_phage	33.5	1.1e-25
WP_000764922.1|1833534_1834287_+	hypothetical protein	NA	A0A097PAT7	Streptococcus_pyogenes_phage	47.2	4.4e-51
WP_000864141.1|1834418_1834976_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	96.8	4.1e-78
>prophage 10
NZ_CP039160	Staphylococcus aureus strain Lr6 chromosome, complete genome	2782298	1944464	2000998	2782298	terminase,coat,protease,integrase	Staphylococcus_phage(56.52%)	55	1956398:1956414	1979851:1979867
WP_000827747.1|1944464_1945631_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434534.1|1945661_1945988_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669861.1|1946279_1946453_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|1946433_1947036_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|1947306_1948128_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284433.1|1948120_1949590_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
WP_000897635.1|1949773_1950850_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|1950869_1951664_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|1951735_1951843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|1951853_1953416_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275727.1|1953620_1954718_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
WP_000149686.1|1955089_1955650_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140870.1|1955702_1956632_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
1956398:1956414	attL	AGATTTAGAAAAAGAAA	NA	NA	NA	NA
WP_001790680.1|1956824_1956998_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021226.1|1957049_1958429_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|1958548_1959577_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000289001.1|1960093_1961245_+|integrase	tyrosine-type recombinase/integrase	integrase	P97010	Streptococcus_pyogenes_phage	31.0	9.0e-11
WP_138079950.1|1961283_1963284_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_001043552.1|1964406_1965207_-	staphylococcal enterotoxin type C2	NA	A0A097PAT7	Streptococcus_pyogenes_phage	43.4	3.1e-50
WP_001035612.1|1965990_1966545_+	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	67.2	4.2e-59
WP_000801979.1|1966741_1967710_-	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
WP_001293071.1|1967986_1968556_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.4	4.6e-101
WP_072326620.1|1968552_1968765_-	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	88.6	5.1e-29
WP_000777464.1|1968896_1969424_-|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	98.9	1.1e-88
WP_000514485.1|1970352_1970718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014667729.1|1970746_1971166_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	54.2	1.1e-30
WP_000733621.1|1971470_1972316_-	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	34.3	3.4e-31
WP_001096369.1|1972422_1974180_+	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_001284658.1|1974169_1974550_+	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_000267034.1|1975573_1975747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188074.1|1976197_1977238_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713059.1|1977294_1978137_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|1978133_1978691_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|1978750_1979275_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|1979395_1979959_+	thioredoxin family protein	NA	NA	NA	NA	NA
1979851:1979867	attR	AGATTTAGAAAAAGAAA	NA	NA	NA	NA
WP_001221651.1|1980024_1980765_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|1980764_1981637_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645727.1|1981633_1982314_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991305.1|1982314_1983211_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.4e-16
WP_000691584.1|1983207_1983588_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|1983846_1984023_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|1984265_1984364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068523.1|1984563_1985850_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_103148657.1|1986474_1988223_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669789.1|1989181_1989361_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001792927.1|1989384_1989693_+	hypothetical protein	NA	M9NTD8	Staphylococcus_phage	77.5	9.3e-24
WP_001791826.1|1989671_1989932_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702262.1|1989984_1990335_-	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_000595401.1|1992009_1993026_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.3	2.3e-26
WP_138079912.1|1993047_1994100_-	bi-component leukocidin LukGH subunit H	NA	A0A2I6PDF3	Staphylococcus_phage	34.3	1.6e-35
WP_000206630.1|1994534_1995758_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_001045345.1|1996260_1997568_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_138079914.1|1998103_1999720_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.6	3.4e-157
WP_000917289.1|1999795_2000080_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197635.1|2000254_2000998_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
