assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_005705635.1_ASM570563v1	NZ_CP039164	Staphylococcus aureus strain R46 chromosome, complete genome	1	343767-343867	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|128aa|up_8|NZ_CP039164.1_336373_336757_-,NA|98aa|up_6|NZ_CP039164.1_337710_338004_-,NA|34aa|up_1|NZ_CP039164.1_342991_343093_+,NA|86aa|up_0|NZ_CP039164.1_343300_343558_-,NA|221aa|down_1|NZ_CP039164.1_344957_345620_-,NA|179aa|down_7|NZ_CP039164.1_351711_352248_-	NA|194aa|up_9|NZ_CP039164.1_335726_336308_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_8|NZ_CP039164.1_336373_336757_-	NA	NA|209aa|up_7|NZ_CP039164.1_337011_337638_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_6|NZ_CP039164.1_337710_338004_-	NA	NA|508aa|up_5|NZ_CP039164.1_338082_339606_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|NZ_CP039164.1_339621_340191_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|NZ_CP039164.1_340682_341438_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|NZ_CP039164.1_341518_342907_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_1|NZ_CP039164.1_342991_343093_+	NA	NA|86aa|up_0|NZ_CP039164.1_343300_343558_-	NA	NA|319aa|down_0|NZ_CP039164.1_343883_344840_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP039164.1_344957_345620_-	NA	NA|136aa|down_2|NZ_CP039164.1_345762_346170_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP039164.1_346682_347261_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP039164.1_347260_348529_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP039164.1_348566_350033_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP039164.1_350057_351599_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP039164.1_351711_352248_-	NA	NA|235aa|down_8|NZ_CP039164.1_352640_353345_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP039164.1_353743_354016_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_005705635.1_ASM570563v1	NZ_CP039164	Staphylococcus aureus strain R46 chromosome, complete genome	2	571156-571248	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_4|NZ_CP039164.1_567639_567747_+,NA|117aa|up_1|NZ_CP039164.1_569858_570209_-,NA|169aa|down_4|NZ_CP039164.1_574995_575502_+,NA|239aa|down_5|NZ_CP039164.1_575663_576380_+	NA|179aa|up_9|NZ_CP039164.1_562990_563527_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_8|NZ_CP039164.1_563695_564172_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_7|NZ_CP039164.1_564211_565507_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_6|NZ_CP039164.1_565534_566056_+	pfam08741, YwhD, YwhD family	NA|337aa|up_5|NZ_CP039164.1_566554_567565_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_4|NZ_CP039164.1_567639_567747_+	NA	NA|128aa|up_3|NZ_CP039164.1_567872_568256_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_2|NZ_CP039164.1_568252_569914_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|117aa|up_1|NZ_CP039164.1_569858_570209_-	NA	NA|212aa|up_0|NZ_CP039164.1_570302_570938_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|NZ_CP039164.1_571376_572204_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP039164.1_572351_573302_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP039164.1_573356_574076_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP039164.1_574059_574860_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP039164.1_574995_575502_+	NA	NA|239aa|down_5|NZ_CP039164.1_575663_576380_+	NA	NA|263aa|down_6|NZ_CP039164.1_576810_577599_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP039164.1_577849_578224_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP039164.1_579171_580101_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP039164.1_580295_580520_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_005705635.1_ASM570563v1	NZ_CP039164	Staphylococcus aureus strain R46 chromosome, complete genome	3	688215-688297	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|69aa|up_9|NZ_CP039164.1_674815_675022_+,NA|34aa|down_1|NZ_CP039164.1_689753_689855_+,NA|82aa|down_3|NZ_CP039164.1_691503_691749_-,NA|89aa|down_6|NZ_CP039164.1_693549_693816_+	NA|69aa|up_9|NZ_CP039164.1_674815_675022_+	NA	NA|237aa|up_8|NZ_CP039164.1_675109_675820_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP039164.1_675803_676808_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP039164.1_677281_679222_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP039164.1_679492_681376_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP039164.1_681387_683169_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP039164.1_683390_684368_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP039164.1_684360_685875_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP039164.1_686114_687173_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP039164.1_687523_688066_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP039164.1_688745_689663_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP039164.1_689753_689855_+	NA	NA|502aa|down_2|NZ_CP039164.1_689932_691438_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|82aa|down_3|NZ_CP039164.1_691503_691749_-	NA	NA|167aa|down_4|NZ_CP039164.1_691778_692279_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_5|NZ_CP039164.1_692298_693165_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|89aa|down_6|NZ_CP039164.1_693549_693816_+	NA	NA|133aa|down_7|NZ_CP039164.1_693965_694364_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_8|NZ_CP039164.1_694326_696432_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_9|NZ_CP039164.1_696549_697521_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit
GCF_005705635.1_ASM570563v1	NZ_CP039164	Staphylococcus aureus strain R46 chromosome, complete genome	4	729096-729176	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	8	729122-729150|729122-729150|729122-729150|729122-729150|729122-729150|729122-729150|729122-729150|729122-729150	NZ_CP039164.1_2686424-2686452|NZ_CP039164.1_305000-304972|NZ_CP039164.1_305055-305027|NZ_CP039164.1_1794900-1794872|NZ_CP039164.1_786167-786195|NZ_CP039164.1_908095-908123|NZ_CP039164.1_1953565-1953593|NZ_CP039164.1_1107661-1107633	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA|35aa|up_7|NZ_CP039164.1_720009_720114_+,NA|36aa|up_5|NZ_CP039164.1_721546_721654_+,NA	NA|191aa|up_9|NZ_CP039164.1_716450_717023_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP039164.1_717436_719968_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP039164.1_720009_720114_+	NA	NA|370aa|up_6|NZ_CP039164.1_720282_721393_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP039164.1_721546_721654_+	NA	NA|280aa|up_4|NZ_CP039164.1_721801_722641_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP039164.1_722814_723465_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP039164.1_723461_723698_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP039164.1_723966_725952_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP039164.1_725959_728806_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP039164.1_729412_730345_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP039164.1_730350_731190_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP039164.1_731197_731683_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP039164.1_731690_733130_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP039164.1_733196_734132_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP039164.1_735291_736203_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP039164.1_736199_737195_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP039164.1_737304_738249_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP039164.1_738821_739409_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP039164.1_739651_740554_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_005705635.1_ASM570563v1	NZ_CP039164	Staphylococcus aureus strain R46 chromosome, complete genome	5	742087-742172	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCACCCCAACTTGCATTGCCTGTAGAA	28	1	11	742115-742144|742115-742144|742115-742144|742115-742144|742115-742144|742115-742144|742115-742144|742115-742144|742115-742144|742115-742144|742115-742144	NZ_CP039164.1_688219-688190|NZ_CP039164.1_734908-734937|NZ_CP039164.1_80226-80197|NZ_CP039164.1_570210-570181|NZ_CP039164.1_687253-687282|NZ_CP039164.1_1032526-1032555|NZ_CP039164.1_1304313-1304284|NZ_CP039164.1_1393238-1393267|NZ_CP039164.1_1942600-1942629|NZ_CP039164.1_1944231-1944260|NZ_CP039164.1_1944290-1944319	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|153aa|down_6|NZ_CP039164.1_750167_750626_+	NA|280aa|up_9|NZ_CP039164.1_730350_731190_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_8|NZ_CP039164.1_731197_731683_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_7|NZ_CP039164.1_731690_733130_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_6|NZ_CP039164.1_733196_734132_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|up_5|NZ_CP039164.1_735291_736203_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|up_4|NZ_CP039164.1_736199_737195_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|up_3|NZ_CP039164.1_737304_738249_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|up_2|NZ_CP039164.1_738821_739409_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|up_1|NZ_CP039164.1_739651_740554_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|up_0|NZ_CP039164.1_741256_741886_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_0|NZ_CP039164.1_742585_743599_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_1|NZ_CP039164.1_743651_744662_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_2|NZ_CP039164.1_744800_745991_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_3|NZ_CP039164.1_746112_746874_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|506aa|down_4|NZ_CP039164.1_746876_748394_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|435aa|down_5|NZ_CP039164.1_748523_749828_+	PRK00077, eno, enolase; Provisional	NA|153aa|down_6|NZ_CP039164.1_750167_750626_+	NA	NA|78aa|down_7|NZ_CP039164.1_750692_750926_+	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|247aa|down_8|NZ_CP039164.1_751041_751782_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|791aa|down_9|NZ_CP039164.1_751815_754188_+	TIGR02063, Ribonuclease_R, ribonuclease R
GCF_005705635.1_ASM570563v1	NZ_CP039164	Staphylococcus aureus strain R46 chromosome, complete genome	6	786101-786182	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	786125-786158|786125-786158	NZ_CP039164.1_1304313-1304280|NZ_CP039164.1_1393238-1393271	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|NZ_CP039164.1_785003_785117_+,NA|144aa|down_8|NZ_CP039164.1_793217_793649_-	NA|206aa|up_9|NZ_CP039164.1_779858_780476_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP039164.1_780630_781125_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP039164.1_781523_781946_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP039164.1_782093_782810_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP039164.1_782892_783432_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP039164.1_783581_783902_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP039164.1_784045_784402_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP039164.1_784559_784940_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP039164.1_785003_785117_+	NA	NA|293aa|up_0|NZ_CP039164.1_785118_785997_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP039164.1_786738_787125_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP039164.1_787117_787414_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP039164.1_787663_788689_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP039164.1_788681_789377_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP039164.1_789394_790216_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP039164.1_790358_791579_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_CP039164.1_791667_792396_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_CP039164.1_792419_793148_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|144aa|down_8|NZ_CP039164.1_793217_793649_-	NA	NA|153aa|down_9|NZ_CP039164.1_793665_794124_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain
GCF_005705635.1_ASM570563v1	NZ_CP039164	Staphylococcus aureus strain R46 chromosome, complete genome	7	1022598-1022685	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|40aa|up_0|NZ_CP039164.1_1022474_1022594_+,NA|45aa|down_0|NZ_CP039164.1_1022694_1022829_-,NA|432aa|down_1|NZ_CP039164.1_1022980_1024276_+,NA|68aa|down_2|NZ_CP039164.1_1024296_1024500_-	NA|730aa|up_9|NZ_CP039164.1_1011052_1013242_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_8|NZ_CP039164.1_1013220_1014705_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_7|NZ_CP039164.1_1014697_1015726_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_6|NZ_CP039164.1_1015728_1016295_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_5|NZ_CP039164.1_1016309_1017788_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_4|NZ_CP039164.1_1017809_1019057_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_3|NZ_CP039164.1_1019321_1020128_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_2|NZ_CP039164.1_1020120_1021521_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_1|NZ_CP039164.1_1021535_1022111_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|40aa|up_0|NZ_CP039164.1_1022474_1022594_+	NA	NA|45aa|down_0|NZ_CP039164.1_1022694_1022829_-	NA	NA|432aa|down_1|NZ_CP039164.1_1022980_1024276_+	NA	NA|68aa|down_2|NZ_CP039164.1_1024296_1024500_-	NA	NA|391aa|down_3|NZ_CP039164.1_1024700_1025873_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_4|NZ_CP039164.1_1025926_1026469_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_5|NZ_CP039164.1_1026622_1026889_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_6|NZ_CP039164.1_1026891_1028610_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_7|NZ_CP039164.1_1028846_1029080_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_8|NZ_CP039164.1_1029277_1030639_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_9|NZ_CP039164.1_1030635_1031655_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
GCF_005705635.1_ASM570563v1	NZ_CP039164	Staphylococcus aureus strain R46 chromosome, complete genome	8	1107695-1107780	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	6	1107725-1107750|1107725-1107750|1107725-1107750|1107725-1107750|1107725-1107750|1107725-1107750	NZ_CP039164.1_734549-734524|NZ_CP039164.1_734605-734580|NZ_CP039164.1_734661-734636|NZ_CP039164.1_734773-734748|NZ_CP039164.1_734829-734804|NZ_CP039164.1_2686417-2686392	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|169aa|up_8|NZ_CP039164.1_1101390_1101897_+,NA|62aa|up_5|NZ_CP039164.1_1103978_1104164_-,NA|83aa|up_4|NZ_CP039164.1_1104373_1104622_-,NA|78aa|up_3|NZ_CP039164.1_1104785_1105019_-,NA|49aa|up_1|NZ_CP039164.1_1107127_1107274_+,NA|75aa|up_0|NZ_CP039164.1_1107230_1107455_+,NA|76aa|down_6|NZ_CP039164.1_1114754_1114982_+	NA|134aa|up_9|NZ_CP039164.1_1100055_1100457_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_8|NZ_CP039164.1_1101390_1101897_+	NA	NA|166aa|up_7|NZ_CP039164.1_1102155_1102653_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_6|NZ_CP039164.1_1102806_1103157_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_5|NZ_CP039164.1_1103978_1104164_-	NA	NA|83aa|up_4|NZ_CP039164.1_1104373_1104622_-	NA	NA|78aa|up_3|NZ_CP039164.1_1104785_1105019_-	NA	NA|320aa|up_2|NZ_CP039164.1_1105495_1106455_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|NZ_CP039164.1_1107127_1107274_+	NA	NA|75aa|up_0|NZ_CP039164.1_1107230_1107455_+	NA	NA|239aa|down_0|NZ_CP039164.1_1107955_1108672_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NZ_CP039164.1_1108779_1109505_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NZ_CP039164.1_1109599_1110325_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NZ_CP039164.1_1110762_1111764_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NZ_CP039164.1_1111786_1112719_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|502aa|down_5|NZ_CP039164.1_1112941_1114447_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NZ_CP039164.1_1114754_1114982_+	NA	NA|316aa|down_7|NZ_CP039164.1_1115286_1116234_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NZ_CP039164.1_1116482_1116671_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|NZ_CP039164.1_1117582_1117717_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_005705635.1_ASM570563v1	NZ_CP039164	Staphylococcus aureus strain R46 chromosome, complete genome	9	2134665-2134815	9	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP039164.1_2129536_2129767_-,NA|364aa|up_0|NZ_CP039164.1_2133555_2134647_+,NA|35aa|down_0|NZ_CP039164.1_2135146_2135251_-,NA|31aa|down_2|NZ_CP039164.1_2137362_2137455_+	NA|237aa|up_9|NZ_CP039164.1_2124883_2125594_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP039164.1_2125714_2126158_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP039164.1_2126357_2126771_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP039164.1_2127491_2128865_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP039164.1_2129536_2129767_-	NA	NA|313aa|up_4|NZ_CP039164.1_2129797_2130736_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP039164.1_2131170_2131836_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP039164.1_2131987_2132308_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP039164.1_2132309_2133290_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP039164.1_2133555_2134647_+	NA	NA|35aa|down_0|NZ_CP039164.1_2135146_2135251_-	NA	NA|379aa|down_1|NZ_CP039164.1_2135937_2137074_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP039164.1_2137362_2137455_+	NA	NA|286aa|down_3|NZ_CP039164.1_2138159_2139017_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP039164.1_2139084_2139867_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP039164.1_2140098_2141904_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP039164.1_2142584_2144123_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP039164.1_2144157_2146290_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP039164.1_2146301_2146736_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP039164.1_2146735_2147842_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_005705635.1_ASM570563v1	NZ_CP039164	Staphylococcus aureus strain R46 chromosome, complete genome	10	2250547-2250740	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	23	2250570-2250602|2250570-2250602|2250570-2250602|2250570-2250602|2250570-2250602|2250570-2250602|2250570-2250602|2250570-2250602|2250626-2250661|2250626-2250661|2250626-2250661|2250685-2250717|2250685-2250717|2250685-2250717|2250685-2250717|2250685-2250717|2250685-2250717|2250685-2250717|2250685-2250717|2250685-2250717|2250685-2250717|2250685-2250717|2250685-2250717	NZ_CP039164.1_734672-734704|NZ_CP039164.1_734840-734872|NZ_CP039164.1_1393284-1393316|NZ_CP039164.1_1942703-1942735|NZ_CP039164.1_1942762-1942794|NZ_CP039164.1_2522777-2522809|NZ_CP039164.1_1107714-1107682|NZ_CP039164.1_1304267-1304235|NZ_CP039164.1_1107661-1107626|NZ_CP039164.1_1794900-1794865|NZ_CP039164.1_1953565-1953600|NZ_CP039164.1_734504-734536|NZ_CP039164.1_734560-734592|NZ_CP039164.1_734616-734648|NZ_CP039164.1_734672-734704|NZ_CP039164.1_734728-734760|NZ_CP039164.1_734784-734816|NZ_CP039164.1_734840-734872|NZ_CP039164.1_1942703-1942735|NZ_CP039164.1_1942762-1942794|NZ_CP039164.1_2522777-2522809|NZ_CP039164.1_1107714-1107682|NZ_CP039164.1_1304267-1304235	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP039164.1_2241074_2241239_+,NA|106aa|up_8|NZ_CP039164.1_2241483_2241801_+,NA|84aa|up_5|NZ_CP039164.1_2246925_2247177_+,NA|57aa|up_0|NZ_CP039164.1_2250316_2250487_+,NA	NA|55aa|up_9|NZ_CP039164.1_2241074_2241239_+	NA	NA|106aa|up_8|NZ_CP039164.1_2241483_2241801_+	NA	NA|1056aa|up_7|NZ_CP039164.1_2241987_2245155_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP039164.1_2245271_2246537_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP039164.1_2246925_2247177_+	NA	NA|255aa|up_4|NZ_CP039164.1_2247168_2247933_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP039164.1_2248094_2248535_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP039164.1_2248527_2249739_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP039164.1_2249840_2250191_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP039164.1_2250316_2250487_+	NA	NA|341aa|down_0|NZ_CP039164.1_2250881_2251904_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP039164.1_2251923_2252523_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP039164.1_2252529_2252763_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP039164.1_2252768_2253215_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP039164.1_2253228_2253714_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP039164.1_2253710_2254970_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP039164.1_2255032_2255527_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP039164.1_2255528_2256035_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP039164.1_2256065_2257070_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP039164.1_2257239_2257845_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
