The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP039164	Staphylococcus aureus strain R46 chromosome, complete genome	2830137	666322	674142	2830137		Hokovirus(16.67%)	10	NA	NA
WP_000244412.1|666322_667378_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
WP_000149344.1|667377_668064_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|668038_668512_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|668853_669294_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|669573_670158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|670256_670970_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|670973_671393_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|671394_672063_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|672413_673007_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217785.1|672990_674142_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 2
NZ_CP039164	Staphylococcus aureus strain R46 chromosome, complete genome	2830137	686114	700731	2830137		uncultured_Caudovirales_phage(50.0%)	16	NA	NA
WP_000663030.1|686114_687173_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197271.1|687523_688066_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429014.1|688745_689663_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_001790641.1|689753_689855_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|689932_691438_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_001788366.1|691503_691749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000930014.1|691778_692279_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|692298_693165_-	DMT family transporter	NA	NA	NA	NA	NA
WP_001790091.1|693549_693816_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000692521.1|693965_694364_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|694326_696432_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|696549_697521_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|697864_698020_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|698058_699030_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|699016_699973_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|699969_700731_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NZ_CP039164	Staphylococcus aureus strain R46 chromosome, complete genome	2830137	751815	759003	2830137	integrase,terminase	Staphylococcus_phage(50.0%)	9	751483:751498	758026:758041
751483:751498	attL	ATTGATAATGAAATGG	NA	NA	NA	NA
WP_001050065.1|751815_754188_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.0	7.8e-94
WP_001085185.1|754209_754674_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
WP_000149511.1|755236_756343_-|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	44.4	1.1e-77
WP_000358990.1|756332_757136_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JC02	uncultured_Caudovirales_phage	55.9	5.3e-10
WP_001045296.1|757271_757475_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_000163544.1|757510_757729_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000784885.1|757740_757887_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000358778.1|758095_758437_+	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	100.0	1.7e-58
758026:758041	attR	ATTGATAATGAAATGG	NA	NA	NA	NA
WP_061736007.1|758433_759003_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.9	7.9e-101
>prophage 4
NZ_CP039164	Staphylococcus aureus strain R46 chromosome, complete genome	2830137	787663	802297	2830137	integrase,terminase	Staphylococcus_phage(70.59%)	22	790200:790216	799560:799576
WP_000571218.1|787663_788689_+	methionine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	3.9e-26
WP_000520233.1|788681_789377_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_138076561.1|789394_790216_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
790200:790216	attL	TTATTCCTGCTAAATAA	NA	NA	NA	NA
WP_000266157.1|790358_791579_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	6.4e-100
WP_000733775.1|791667_792396_-	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	32.3	1.9e-22
WP_031901880.1|792419_793148_-	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	34.9	6.7e-28
WP_001228759.1|793217_793649_-	hypothetical protein	NA	Q4ZCB6	Staphylococcus_virus	56.0	5.1e-36
WP_000281657.1|793665_794124_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0H4J322	Staphylococcus_phage	83.0	5.1e-66
WP_031901881.1|794135_794468_-	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	75.2	2.7e-37
WP_000243851.1|794660_794924_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	3.1e-36
WP_000091731.1|794916_795189_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	90.0	9.7e-41
WP_000784875.1|795200_795347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000358777.1|795555_795897_+	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	98.2	1.4e-57
WP_001293067.1|795893_796463_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.9	1.0e-100
WP_000278085.1|796770_797571_+	staphylococcal enterotoxin type B	NA	A0A097PAT7	Streptococcus_pyogenes_phage	49.4	1.0e-53
WP_001035631.1|797648_798206_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	73.8	1.4e-70
WP_001795626.1|798578_798731_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	98.0	7.6e-19
WP_000139424.1|798801_798912_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	94.4	2.4e-11
WP_000382163.1|798898_799099_+	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
WP_000752917.1|799929_800124_+	CsbD family protein	NA	NA	NA	NA	NA
799560:799576	attR	TTATTCCTGCTAAATAA	NA	NA	NA	NA
WP_001183858.1|800356_801208_-	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_000168845.1|801535_802297_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
>prophage 5
NZ_CP039164	Staphylococcus aureus strain R46 chromosome, complete genome	2830137	810479	854314	2830137	capsid,tail,integrase,holin,portal,protease,terminase,head	Staphylococcus_phage(92.54%)	68	810311:810326	829343:829358
810311:810326	attL	ATCAAGCAAAAACATC	NA	NA	NA	NA
WP_000857198.1|810479_811517_-|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	100.0	2.6e-179
WP_000440838.1|811710_812415_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	100.0	4.6e-127
WP_000705241.1|812554_812722_-	hypothetical protein	NA	U5U774	Staphylococcus_phage	100.0	1.7e-24
WP_000109189.1|812791_812977_-	hypothetical protein	NA	U5U7D6	Staphylococcus_phage	100.0	2.3e-25
WP_001557601.1|813193_814048_-	restriction endonuclease	NA	A0A1X9H037	Staphylococcus_phage	100.0	7.3e-151
WP_001083975.1|814059_814776_-	helix-turn-helix domain-containing protein	NA	A0A1X9H038	Staphylococcus_phage	100.0	5.4e-131
WP_000639923.1|814939_815182_+	DUF739 family protein	NA	A0A1X9H035	Staphylococcus_phage	100.0	1.6e-39
WP_000435349.1|815194_815641_+	hypothetical protein	NA	A0A1W6JPI3	Staphylococcus_phage	100.0	1.9e-78
WP_000939495.1|815655_815796_+	hypothetical protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
WP_000772137.1|815788_815998_-	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
WP_001148590.1|816054_816804_+	antirepressor	NA	A0A1W6JPN2	Staphylococcus_phage	100.0	2.0e-136
WP_000435343.1|816816_817077_+	hypothetical protein	NA	A0A2I6PDT7	Staphylococcus_phage	100.0	3.5e-40
WP_001120936.1|817309_817630_+	DUF771 domain-containing protein	NA	A0A1W6JPI1	Staphylococcus_phage	100.0	7.4e-56
WP_000066011.1|817626_817788_+	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000291488.1|817880_818141_+	DUF1108 family protein	NA	A0A2I6PDH1	Staphylococcus_phage	100.0	2.6e-43
WP_001205732.1|818149_818413_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_138076563.1|818421_820365_+	AAA family ATPase	NA	I1W619	Staphylococcus_phage	99.2	0.0e+00
WP_000138479.1|820366_821287_+	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	94.8	3.3e-157
WP_138076566.1|821352_821985_+	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	99.4	2.7e-86
WP_138076570.1|821985_822456_+	single-stranded DNA-binding protein	NA	A0A1P8L6D9	Staphylococcus_phage	97.4	3.1e-79
WP_138076573.1|822485_823370_+	DnaD domain protein	NA	S4V6D4	Staphylococcus_phage	97.3	1.2e-135
WP_000338530.1|823376_823595_+	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_031807352.1|823603_824011_+	RusA family crossover junction endodeoxyribonuclease	NA	A0EWX6	Staphylococcus_phage	97.0	9.3e-72
WP_001187264.1|824010_824196_+	DUF3113 family protein	NA	D2JGK9	Staphylococcus_phage	100.0	7.0e-27
WP_001614808.1|824196_824556_+	hypothetical protein	NA	D2JGL0	Staphylococcus_phage	98.3	1.5e-60
WP_138076576.1|824556_824805_+	hypothetical protein	NA	Q4ZAR4	Staphylococcus_virus	96.3	5.2e-41
WP_000695766.1|824818_825220_+	hypothetical protein	NA	S4V6D5	Staphylococcus_phage	99.2	2.1e-68
WP_138076579.1|825216_825582_+	acetyltransferase	NA	A0A0H3U4X7	Staphylococcus_phage	91.0	2.6e-49
WP_001066447.1|825574_826111_+	hypothetical protein	NA	A0A0H3U2Z8	Staphylococcus_phage	100.0	7.2e-96
WP_000195768.1|826147_826354_+	DUF1381 domain-containing protein	NA	B7T0C2	Staphylococcus_virus	98.5	4.2e-20
WP_000219344.1|826350_826554_+	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	97.0	8.3e-29
WP_001820291.1|826507_826783_+	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	94.5	1.7e-40
WP_001570808.1|826772_827159_+	hypothetical protein	NA	Q4ZBK1	Staphylococcus_phage	98.4	1.5e-63
WP_000595265.1|827158_827308_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_117201058.1|827307_827508_+	DUF1514 family protein	NA	R9QT57	Staphylococcus_phage	98.5	3.1e-28
WP_000590126.1|827535_827952_+	hypothetical protein	NA	A0A1X9H0U8	Staphylococcus_phage	100.0	2.9e-76
WP_000988336.1|828183_828483_+	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000402904.1|828613_828958_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000625088.1|828954_830616_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
829343:829358	attR	ATCAAGCAAAAACATC	NA	NA	NA	NA
WP_000025274.1|830631_831819_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000861914.1|831802_832540_+|protease	Clp protease ClpP	protease	C8CH20	Staphylococcus_phage	100.0	2.3e-129
WP_000154555.1|832563_833709_+|capsid	phage major capsid protein	capsid	A0A1X9H072	Staphylococcus_phage	100.0	5.6e-215
WP_000238236.1|833728_834013_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000150936.1|834002_834287_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|834270_834633_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000114225.1|834629_835034_+	hypothetical protein	NA	A0A2I6PDJ6	Staphylococcus_phage	100.0	4.3e-69
WP_000565498.1|835030_835438_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000268738.1|835438_836080_+|tail	phage tail protein	tail	C8CH27	Staphylococcus_phage	100.0	2.5e-119
WP_094969686.1|836040_836346_+	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	93.2	1.5e-29
WP_001096355.1|836396_836747_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_014667731.1|836991_841521_+|tail	phage tail tape measure protein	tail	A0EX03	Staphylococcus_phage	96.8	0.0e+00
WP_000567391.1|841517_843002_+|tail	phage tail protein	tail	A0A068A242	Staphylococcus_phage	98.8	4.6e-294
WP_031910186.1|843017_846803_+	phage minor structural protein	NA	A0A1P8L6B8	Staphylococcus_phage	99.8	0.0e+00
WP_001153681.1|846792_846945_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040261.1|846991_847279_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_000539688.1|847336_847633_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_011447039.1|847782_847959_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_001791821.1|848011_848119_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|848170_848425_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|848436_849192_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000920038.1|849382_849874_+	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	99.4	4.7e-86
WP_000273396.1|850585_851005_+	hypothetical protein	NA	Q9MBN1	Staphylococcus_prophage	100.0	8.7e-81
WP_000156953.1|851018_852191_+	hypothetical protein	NA	Q9MBN0	Staphylococcus_prophage	99.5	1.7e-214
WP_001110820.1|852353_852650_+	peptidoglycan hydrolase	NA	A0A1P8L6B4	Staphylococcus_phage	95.9	1.6e-49
WP_000702263.1|853160_853511_+	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|853563_853824_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_001795394.1|853802_854111_-	hypothetical protein	NA	M9NTD8	Staphylococcus_phage	100.0	2.1e-39
WP_000669789.1|854134_854314_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
>prophage 6
NZ_CP039164	Staphylococcus aureus strain R46 chromosome, complete genome	2830137	1007822	1016295	2830137		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1007822_1008305_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010412.1|1008291_1009416_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1009419_1010124_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1010123_1010387_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1010388_1011060_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032727.1|1011052_1013242_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_138076603.1|1013220_1014705_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
WP_000030812.1|1014697_1015726_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238664.1|1015728_1016295_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 7
NZ_CP039164	Staphylococcus aureus strain R46 chromosome, complete genome	2830137	1446254	1533530	2830137	plate,capsid,tail,integrase,holin,portal,protease,terminase,tRNA,head	Staphylococcus_phage(79.75%)	107	1485489:1485506	1532047:1532064
WP_000858789.1|1446254_1447547_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
WP_000525070.1|1447868_1450562_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049919.1|1450585_1451557_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361544.1|1451543_1452746_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	3.2e-35
WP_000690027.1|1452750_1453893_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|1454133_1454451_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1454787_1455468_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000152734.1|1455539_1456127_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000004947.1|1456116_1456692_-	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_000389524.1|1456705_1457950_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245895.1|1457956_1459255_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776323.1|1459264_1460329_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269929.1|1460354_1461521_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
WP_000789522.1|1461906_1462107_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442480.1|1462315_1462765_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001817755.1|1462856_1463801_-	heptaprenyl diphosphate synthase subunit II	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|1463817_1464543_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450553.1|1464545_1465118_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1465548_1465821_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161738.1|1465991_1466990_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_138076641.1|1467006_1468317_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_138076644.1|1468538_1469714_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_001789944.1|1469970_1470162_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001789945.1|1470278_1470395_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644395.1|1470425_1471085_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681756.1|1471161_1472130_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|1472244_1473231_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_001789943.1|1473391_1473508_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069282.1|1473632_1475093_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902119.1|1475245_1476625_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
WP_001163801.1|1476614_1477568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138076647.1|1477675_1477924_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	46.7	9.2e-14
WP_001186912.1|1478029_1478575_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_001789947.1|1478853_1478973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000913219.1|1479171_1480086_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033757.1|1480100_1480307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000476873.1|1481557_1482475_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000126130.1|1482565_1482781_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.0e-25
WP_000966213.1|1482844_1483144_-	hypothetical protein	NA	A7TWL2	Staphylococcus_phage	94.7	1.7e-46
WP_000909213.1|1483502_1484957_-	CHAP domain-containing protein	NA	U5U7D2	Staphylococcus_phage	100.0	2.6e-289
WP_000339146.1|1484967_1485270_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000466784.1|1485405_1485705_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
1485489:1485506	attL	TGTCTCTAATATTTTTAG	NA	NA	NA	NA
WP_000916020.1|1486013_1486178_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1486170_1486560_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000067127.1|1486559_1488026_-|plate	BppU family phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	100.0	1.5e-273
WP_000429558.1|1488025_1489936_-	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000179858.1|1489951_1490242_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000384474.1|1490241_1491825_-	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_001190533.1|1491833_1492658_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_138076651.1|1492657_1498858_-|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	100.0	0.0e+00
WP_000438833.1|1498871_1499030_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589167.1|1499071_1499422_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000169127.1|1499479_1499935_-	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000807541.1|1500026_1500668_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	99.1	5.0e-120
WP_001023802.1|1500702_1501098_-	DUF3168 domain-containing protein	NA	A0A2I6PDD8	Staphylococcus_phage	100.0	2.6e-66
WP_000110020.1|1501098_1501500_-	hypothetical protein	NA	A0A2I6PDD3	Staphylococcus_phage	100.0	6.2e-68
WP_000395495.1|1501496_1501829_-	hypothetical protein	NA	A0A2I6PDD6	Staphylococcus_phage	99.1	8.2e-58
WP_000050973.1|1501840_1502119_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142738.1|1502187_1503351_-|capsid	phage major capsid protein	capsid	M9QQM0	Staphylococcus_phage	100.0	4.2e-218
WP_000061862.1|1503362_1504136_-|protease	Clp protease ClpP	protease	M1TAZ4	Staphylococcus_phage	98.4	3.0e-135
WP_001100671.1|1504119_1505358_-|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	99.8	2.6e-234
WP_000153555.1|1505362_1507054_-|terminase	terminase large subunit	terminase	A0A2I6PE44	Staphylococcus_phage	100.0	0.0e+00
WP_000778932.1|1507043_1507349_-|terminase	terminase	terminase	A0A2I6PE27	Staphylococcus_phage	100.0	2.9e-49
WP_000160689.1|1507477_1507792_-	HNH endonuclease	NA	A0A2I6PDC4	Staphylococcus_phage	100.0	2.5e-56
WP_000513699.1|1507948_1508386_-	transcriptional regulator	NA	A0A2I6PDC2	Staphylococcus_phage	100.0	4.6e-77
WP_001793488.1|1508398_1509766_-	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	100.0	1.7e-263
WP_000665205.1|1509746_1510037_-	VRR-NUC domain-containing protein	NA	U5U7A3	Staphylococcus_phage	100.0	4.9e-51
WP_001801650.1|1510170_1510269_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_000884870.1|1510377_1512825_-	hypothetical protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
WP_001548893.1|1512879_1513086_+	hypothetical protein	NA	A0A1X9IGZ9	Staphylococcus_phage	100.0	7.6e-30
WP_000265252.1|1513112_1513313_-	DUF1514 family protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
WP_000595263.1|1513380_1513533_-	transcriptional activator RinB	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
WP_000592205.1|1513529_1513916_-	hypothetical protein	NA	A0A0H3U465	Staphylococcus_phage	96.9	2.4e-61
WP_000195835.1|1513912_1514119_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	97.1	6.4e-29
WP_000185653.1|1514155_1514686_-	dUTP pyrophosphatase	NA	C8CH05	Staphylococcus_phage	100.0	1.7e-94
WP_001065071.1|1514678_1514927_-	DUF1024 family protein	NA	Q9B0F3	Staphylococcus_virus	97.6	2.0e-37
WP_000144703.1|1514919_1515228_-	hypothetical protein	NA	Q6R826	Staphylococcus_virus	96.1	8.4e-49
WP_000979209.1|1515224_1515572_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_000695756.1|1515568_1515973_-	hypothetical protein	NA	A0A0E3T8H9	Staphylococcus_phage	100.0	4.2e-72
WP_000693989.1|1515975_1516182_-	hypothetical protein	NA	A0A2K9VBT9	Staphylococcus_phage	100.0	3.0e-34
WP_078064221.1|1516195_1516444_-	hypothetical protein	NA	M9NTB1	Staphylococcus_phage	97.5	1.7e-39
WP_000022736.1|1516443_1516698_-	DUF3310 domain-containing protein	NA	Q6R831	Staphylococcus_virus	100.0	1.3e-42
WP_000113974.1|1516697_1517099_-	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_001164629.1|1517098_1517284_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_001802096.1|1517296_1519249_-	DNA polymerase	NA	A0A2I6PE86	Staphylococcus_phage	100.0	0.0e+00
WP_000645048.1|1519316_1519874_-	DUF2815 family protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
WP_000762552.1|1519899_1521066_-	DUF2800 domain-containing protein	NA	A0A2I6PEL9	Staphylococcus_phage	100.0	1.4e-221
WP_000985980.1|1521062_1521425_-	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	99.2	1.9e-55
WP_001802832.1|1521438_1521723_-	DUF1108 family protein	NA	A0A2I6PEM2	Staphylococcus_phage	100.0	1.5e-47
WP_000163431.1|1521703_1522006_-	DUF2482 family protein	NA	A0A1X9IGX2	Staphylococcus_phage	100.0	2.4e-48
WP_000829612.1|1521998_1522316_-	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	1.1e-35
WP_001285951.1|1522408_1522570_-	DUF1270 domain-containing protein	NA	A0A2I6PEK6	Staphylococcus_phage	100.0	1.1e-20
WP_001124198.1|1522581_1522845_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001036299.1|1522869_1523085_-	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
WP_001566045.1|1523131_1523371_+	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	98.7	7.4e-37
WP_001115060.1|1523627_1523819_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_000429766.1|1523979_1524309_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_000525000.1|1524321_1524783_+	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	99.3	1.3e-85
WP_000755718.1|1524800_1525235_+	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	100.0	1.2e-24
WP_000449655.1|1525263_1525659_+	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_000227849.1|1525768_1525894_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	3.3e-12
WP_000191464.1|1525890_1526505_-	hypothetical protein	NA	M9QRQ8	Staphylococcus_phage	99.5	2.5e-105
WP_000264751.1|1526630_1527836_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_001566047.1|1527878_1529906_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	97.7	6.9e-115
WP_001548912.1|1529898_1530828_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987769.1|1531072_1532824_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
1532047:1532064	attR	TGTCTCTAATATTTTTAG	NA	NA	NA	NA
WP_000064078.1|1532804_1533530_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
>prophage 8
NZ_CP039164	Staphylococcus aureus strain R46 chromosome, complete genome	2830137	1589178	1597490	2830137	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1589178_1589964_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1590089_1590980_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062180.1|1590989_1592336_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000683931.1|1592449_1593550_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624584.1|1593552_1594230_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1594360_1595467_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217261.1|1595690_1597490_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 9
NZ_CP039164	Staphylococcus aureus strain R46 chromosome, complete genome	2830137	1666832	1675875	2830137	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1666832_1667351_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594993.1|1667372_1669646_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749795.1|1669848_1672128_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1672402_1672663_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1672681_1673821_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019172.1|1673843_1674869_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1674870_1675875_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 10
NZ_CP039164	Staphylococcus aureus strain R46 chromosome, complete genome	2830137	1807147	1880764	2830137	protease,tRNA,transposase	Staphylococcus_phage(91.67%)	79	NA	NA
WP_001549041.1|1807147_1809565_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_001025061.1|1809852_1811034_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1811143_1812097_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1812093_1812657_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1812776_1813178_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1814756_1815584_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1815586_1815706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001834472.1|1815717_1815909_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1815817_1816819_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1816940_1817405_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|1817417_1818599_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493892.1|1818609_1819242_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000384181.1|1819248_1820280_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	4.8e-197
WP_001261677.1|1820772_1822275_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1823059_1823374_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_138076683.1|1823373_1824666_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.3	4.2e-227
WP_000163235.1|1824683_1825079_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_001032833.1|1825373_1826228_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1826765_1826990_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1827188_1827659_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1827771_1828215_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030465.1|1828201_1828645_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001168904.1|1828940_1829576_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1830015_1830729_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1830988_1831291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1831546_1831912_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623471.1|1831908_1832262_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_138076686.1|1832844_1833678_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.2	1.1e-154
WP_000366154.1|1833889_1834798_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000933822.1|1834922_1836116_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_031806974.1|1836486_1838079_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_000093392.1|1838214_1838700_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
WP_002868962.1|1839074_1839821_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000672014.1|1839825_1840299_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1840364_1840622_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778523.1|1840618_1841620_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000348360.1|1841624_1843103_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_011443643.1|1843261_1843717_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_001795535.1|1844019_1844670_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_031806886.1|1844750_1845761_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.2e-73
WP_000093392.1|1845864_1846350_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
WP_000669046.1|1846562_1847189_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
WP_000627551.1|1847229_1847574_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000414205.1|1847671_1848223_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000494956.1|1848440_1849082_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000809857.1|1849195_1849381_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1849382_1849559_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070811.1|1849569_1849953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001790863.1|1850144_1850354_-|transposase	transposase	transposase	A0A2H4PQV6	Staphylococcus_phage	100.0	1.4e-31
WP_001549059.1|1850556_1850700_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_138076689.1|1850902_1850998_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_001791893.1|1851120_1851222_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138076832.1|1851569_1851929_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_138076692.1|1852467_1856139_-	ATP-binding protein	NA	A0A2H4PQT3	Staphylococcus_phage	99.9	0.0e+00
WP_000072576.1|1857691_1858891_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
WP_001791797.1|1859678_1859813_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038688.1|1859877_1860597_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001038759.1|1860747_1861464_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_011447030.1|1861565_1861673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1861621_1862341_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038867.1|1862461_1863181_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001039447.1|1863238_1863961_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001039435.1|1864085_1864793_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_001790219.1|1865228_1865447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001092763.1|1865756_1866323_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_000586140.1|1866796_1867495_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_000581552.1|1867491_1868253_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_001096791.1|1868249_1868942_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000691541.1|1868964_1870338_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_000504439.1|1870347_1870866_-	enterotoxin	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000566596.1|1870881_1872126_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_138076695.1|1874648_1875374_-	hypothetical protein	NA	A0A2H4PQG8	Staphylococcus_phage	97.2	1.2e-114
WP_000416756.1|1875438_1875582_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_001790705.1|1876025_1876217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000416759.1|1876318_1876462_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000782464.1|1876703_1877687_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000473596.1|1877688_1878624_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_001790220.1|1879423_1879963_+	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	2.0e-61
WP_000206350.1|1879975_1880764_+	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
>prophage 11
NZ_CP039164	Staphylococcus aureus strain R46 chromosome, complete genome	2830137	2765328	2817405	2830137	coat,tRNA,transposase	Staphylococcus_phage(73.91%)	51	NA	NA
WP_001106057.1|2765328_2766003_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
WP_000119405.1|2766065_2767328_-	plasmid recombination protein	NA	NA	NA	NA	NA
WP_001242578.1|2767834_2768239_-	bleomycin binding protein	NA	NA	NA	NA	NA
WP_001106057.1|2768424_2769099_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
WP_000958858.1|2769363_2770107_+	glycerophosphoryl diester phosphodiesterase	NA	NA	NA	NA	NA
WP_000872606.1|2770203_2770632_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_001801873.1|2770677_2772687_-	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA	NA	NA	NA	NA	NA
WP_001549960.1|2772783_2773770_+	beta-lactam sensor/signal transducer MecR1	NA	NA	NA	NA	NA
WP_001549961.1|2773741_2774002_+	DUF3387 domain-containing protein	NA	NA	NA	NA	NA
WP_001092189.1|2775651_2776158_-	DUF1643 domain-containing protein	NA	NA	NA	NA	NA
WP_000700851.1|2776172_2776484_-	DUF960 domain-containing protein	NA	NA	NA	NA	NA
WP_001067160.1|2776485_2776578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000849672.1|2776570_2776921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001186608.1|2777442_2779071_-	recombinase family protein	NA	A0A0S2SXR4	Bacillus_phage	31.4	5.4e-46
WP_000815640.1|2779092_2780442_-	recombinase family protein	NA	Q9T200	Bacillus_phage	24.8	1.4e-18
WP_000079473.1|2780675_2782469_-	DUF927 domain-containing protein	NA	NA	NA	NA	NA
WP_000273823.1|2782468_2782765_-	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_001042023.1|2782957_2784004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138076799.1|2784458_2785613_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_000749913.1|2785642_2786443_+	abortive infection family protein	NA	NA	NA	NA	NA
WP_001790628.1|2786731_2786866_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001790000.1|2786829_2786922_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000048258.1|2788911_2789364_-|tRNA	tRNA-dihydrouridine synthase	tRNA	NA	NA	NA	NA
WP_001791873.1|2789379_2789481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000355845.1|2789578_2790334_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_001105087.1|2790333_2790594_-	persulfide-sensing transcriptional repressor CstR	NA	NA	NA	NA	NA
WP_000816129.1|2790730_2791798_+	persulfide response sulfurtransferase CstA	NA	A0A2H4PQR9	Staphylococcus_phage	41.5	3.5e-09
WP_000465472.1|2791828_2793163_+	persulfide dioxygenase-sulfurtransferase CstB	NA	NA	NA	NA	NA
WP_001039168.1|2795639_2796002_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	99.2	8.9e-66
WP_000998181.1|2796003_2796288_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	95.7	1.9e-47
WP_001019764.1|2796284_2796926_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	91.5	1.5e-108
WP_138076802.1|2797697_2797994_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000163792.1|2798000_2799953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000868795.1|2800024_2800522_-	trimethoprim-resistant dihydrofolate reductase DfrG	NA	G3MBI7	Bacillus_virus	49.1	4.0e-40
WP_031784974.1|2803281_2803395_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000393259.1|2803902_2804295_+	GNAT family N-acetyltransferase	NA	A0A0N7GFH7	Staphylococcus_phage	100.0	6.9e-72
WP_001028144.1|2804295_2805735_+	aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A1X9I6C2	Streptococcus_phage	100.0	3.8e-285
WP_000771368.1|2806066_2806594_-|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
WP_138076805.1|2806644_2806863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000846280.1|2806880_2807459_-	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.9	4.8e-29
WP_001190615.1|2807470_2807812_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
WP_138076840.1|2807840_2807990_+	pathogenicity island protein	NA	Q4ZE76	Staphylococcus_phage	83.7	3.4e-16
WP_001103942.1|2807992_2808313_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	51.9	1.3e-20
WP_001002732.1|2808376_2809246_+	hypothetical protein	NA	A0A1W6JQL5	Staphylococcus_phage	92.7	3.4e-156
WP_138076808.1|2809262_2809703_+	hypothetical protein	NA	A0A1W6JQD6	Staphylococcus_phage	94.6	7.8e-56
WP_000998179.1|2809704_2809989_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	100.0	1.2e-49
WP_138076811.1|2809985_2810627_+	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	92.5	1.5e-108
WP_000195429.1|2811183_2812356_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_001790739.1|2815451_2815556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138076814.1|2815691_2816273_-|transposase	transposase	transposase	A0A1W6JQD5	Staphylococcus_phage	95.6	6.9e-60
WP_000093392.1|2816919_2817405_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
