assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_005518035.1_ASM551803v1	NZ_CP040247	Mycobacterium avium subsp. hominissuis strain 101034 chromosome, complete genome	1	676574-676817	1	CRISPRCasFinder	no		RT,cas3,csa3,WYL,cas4,DEDDh,DinG	Orphan	GCGGCGGGTGCCGGAGCGGACGGCG	25	0	0	NA	NA	NA	4	4	Orphan	RT,cas3,csa3,WYL,cas4,DEDDh,DinG	NA|67aa|up_9|NZ_CP040247.1_669262_669463_+,NA|49aa|up_0|NZ_CP040247.1_675933_676080_+,NA	NA|67aa|up_9|NZ_CP040247.1_669262_669463_+	NA	NA|781aa|up_8|NZ_CP040247.1_669606_671949_+	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|212aa|up_7|NZ_CP040247.1_672031_672667_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|238aa|up_6|NZ_CP040247.1_672674_673388_-	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	NA|122aa|up_5|NZ_CP040247.1_673425_673791_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|175aa|up_4|NZ_CP040247.1_673842_674367_-	COG3797, COG3797, Uncharacterized protein conserved in bacteria [Function unknown]	NA|148aa|up_3|NZ_CP040247.1_674441_674885_+	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme	NA|75aa|up_2|NZ_CP040247.1_674943_675168_+	pfam17227, DUF5302, Family of unknown function (DUF5302)	NA|192aa|up_1|NZ_CP040247.1_675329_675905_+	TIGR03252, TIGR03252, uncharacterized HhH-GPD family protein	NA|49aa|up_0|NZ_CP040247.1_675933_676080_+	NA	NA|197aa|down_0|NZ_CP040247.1_677300_677891_-	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated	NA|438aa|down_1|NZ_CP040247.1_678136_679450_+	PRK13375, pimE, mannosyltransferase; Provisional	NA|95aa|down_2|NZ_CP040247.1_679542_679827_-	PRK00823, phhB, pterin-4-alpha-carbinolamine dehydratase; Validated	NA|258aa|down_3|NZ_CP040247.1_679957_680731_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|131aa|down_4|NZ_CP040247.1_680900_681293_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|1231aa|down_5|NZ_CP040247.1_681711_685404_+	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion]	NA|539aa|down_6|NZ_CP040247.1_685405_687022_+	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|228aa|down_7|NZ_CP040247.1_687018_687702_+	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion]	NA|244aa|down_8|NZ_CP040247.1_687694_688426_+	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit	NA|633aa|down_9|NZ_CP040247.1_688588_690487_+	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
GCF_005518035.1_ASM551803v1	NZ_CP040247	Mycobacterium avium subsp. hominissuis strain 101034 chromosome, complete genome	2	1007213-1007291	2	CRISPRCasFinder	no		RT,cas3,csa3,WYL,cas4,DEDDh,DinG	Orphan	ATCAATTGCGCCACTCCTTTTCATCGC	27	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,csa3,WYL,cas4,DEDDh,DinG	NA|133aa|up_1|NZ_CP040247.1_1005114_1005513_-,NA|213aa|down_5|NZ_CP040247.1_1014429_1015068_+	NA|416aa|up_9|NZ_CP040247.1_996084_997332_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|262aa|up_8|NZ_CP040247.1_997328_998114_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|78aa|up_7|NZ_CP040247.1_998144_998378_+	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|306aa|up_6|NZ_CP040247.1_998395_999313_-	TIGR03564, F420_MSMEG_4879, F420-dependent oxidoreductase, MSMEG_4879 family	NA|936aa|up_5|NZ_CP040247.1_999416_1002224_+	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|260aa|up_4|NZ_CP040247.1_1002299_1003079_+	pfam14023, DUF4239, Protein of unknown function (DUF4239)	NA|329aa|up_3|NZ_CP040247.1_1003178_1004165_+	cd19084, AKR_AKR11B1-like, AKR11B1/AKR11B2 subfamily of aldo-keto reductase (AKR)	NA|310aa|up_2|NZ_CP040247.1_1004166_1005096_-	cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII	NA|133aa|up_1|NZ_CP040247.1_1005114_1005513_-	NA	NA|252aa|up_0|NZ_CP040247.1_1005553_1006309_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|515aa|down_0|NZ_CP040247.1_1007297_1008842_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|down_1|NZ_CP040247.1_1008838_1009960_-	PRK03343, PRK03343, transaldolase; Validated	NA|700aa|down_2|NZ_CP040247.1_1009976_1012076_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|309aa|down_3|NZ_CP040247.1_1012332_1013259_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|325aa|down_4|NZ_CP040247.1_1013435_1014410_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|213aa|down_5|NZ_CP040247.1_1014429_1015068_+	NA	NA|318aa|down_6|NZ_CP040247.1_1015017_1015971_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|260aa|down_7|NZ_CP040247.1_1016145_1016925_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|303aa|down_8|NZ_CP040247.1_1016921_1017830_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|568aa|down_9|NZ_CP040247.1_1017853_1019557_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein
GCF_005518035.1_ASM551803v1	NZ_CP040247	Mycobacterium avium subsp. hominissuis strain 101034 chromosome, complete genome	3	1817559-1817657	3	CRISPRCasFinder	no		RT,cas3,csa3,WYL,cas4,DEDDh,DinG	Orphan	CCGCTCGGGGTCGGGCCGCAACCG	24	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,csa3,WYL,cas4,DEDDh,DinG	NA|193aa|up_2|NZ_CP040247.1_1811167_1811746_-,NA	NA|469aa|up_9|NZ_CP040247.1_1805570_1806977_+	pfam00668, Condensation, Condensation domain	NA|107aa|up_8|NZ_CP040247.1_1807029_1807350_-	pfam00226, DnaJ, DnaJ domain	NA|140aa|up_7|NZ_CP040247.1_1807662_1808082_-	pfam00011, HSP20, Hsp20/alpha crystallin family	NA|127aa|up_6|NZ_CP040247.1_1808194_1808575_+	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator	NA|148aa|up_5|NZ_CP040247.1_1808634_1809078_-	pfam00011, HSP20, Hsp20/alpha crystallin family	NA|410aa|up_4|NZ_CP040247.1_1809242_1810472_+	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|95aa|up_3|NZ_CP040247.1_1810823_1811108_-	pfam11225, DUF3024, Protein of unknown function (DUF3024)	NA|193aa|up_2|NZ_CP040247.1_1811167_1811746_-	NA	NA|529aa|up_1|NZ_CP040247.1_1812578_1814165_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|492aa|up_0|NZ_CP040247.1_1815287_1816763_-	PRK06524, PRK06524, biotin carboxylase-like protein; Validated	NA|362aa|down_0|NZ_CP040247.1_1817731_1818817_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|104aa|down_1|NZ_CP040247.1_1818931_1819243_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|134aa|down_2|NZ_CP040247.1_1819393_1819795_-	cd08355, TioX_like, Micromonospora sp	NA|281aa|down_3|NZ_CP040247.1_1819748_1820591_-	pfam12833, HTH_18, Helix-turn-helix domain	NA|146aa|down_4|NZ_CP040247.1_1820814_1821252_+	pfam00553, CBM_2, Cellulose binding domain	NA|218aa|down_5|NZ_CP040247.1_1822187_1822841_+	TIGR03401, Uncharacterized_protein_YFL061W/YNL335W, HD domain protein, cyanamide hydratase family	NA|607aa|down_6|NZ_CP040247.1_1822864_1824685_-	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	NA|295aa|down_7|NZ_CP040247.1_1824829_1825714_+	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|198aa|down_8|NZ_CP040247.1_1825734_1826328_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|273aa|down_9|NZ_CP040247.1_1826435_1827254_+	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]
GCF_005518035.1_ASM551803v1	NZ_CP040247	Mycobacterium avium subsp. hominissuis strain 101034 chromosome, complete genome	4	4227429-4227560	4	CRISPRCasFinder	no		RT,cas3,csa3,WYL,cas4,DEDDh,DinG	Orphan	CGCTCGCCGAGGGGCAGGCGCTCGC	25	0	0	NA	NA	NA	2	2	Orphan	RT,cas3,csa3,WYL,cas4,DEDDh,DinG	NA|100aa|up_9|NZ_CP040247.1_4216456_4216756_-,NA|566aa|down_4|NZ_CP040247.1_4233026_4234724_+,NA|99aa|down_9|NZ_CP040247.1_4239363_4239660_-	NA|100aa|up_9|NZ_CP040247.1_4216456_4216756_-	NA	NA|385aa|up_8|NZ_CP040247.1_4217307_4218462_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|326aa|up_7|NZ_CP040247.1_4218477_4219455_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|123aa|up_6|NZ_CP040247.1_4219663_4220032_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|405aa|up_5|NZ_CP040247.1_4220072_4221287_-	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|310aa|up_4|NZ_CP040247.1_4221534_4222464_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|549aa|up_3|NZ_CP040247.1_4222503_4224150_-	PRK08322, PRK08322, acetolactate synthase large subunit	NA|473aa|up_2|NZ_CP040247.1_4224230_4225649_+	PRK09406, gabD1, succinic semialdehyde dehydrogenase; Reviewed	NA|312aa|up_1|NZ_CP040247.1_4225715_4226651_-	PRK08326, PRK08326, R2-like ligand-binding oxidase	NA|228aa|up_0|NZ_CP040247.1_4226647_4227331_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|570aa|down_0|NZ_CP040247.1_4227567_4229277_-	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|327aa|down_1|NZ_CP040247.1_4229402_4230383_+	pfam02126, PTE, Phosphotriesterase family	NA|409aa|down_2|NZ_CP040247.1_4230413_4231640_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|419aa|down_3|NZ_CP040247.1_4231761_4233018_+	pfam11271, DUF3068, Protein of unknown function (DUF3068)	NA|566aa|down_4|NZ_CP040247.1_4233026_4234724_+	NA	NA|389aa|down_5|NZ_CP040247.1_4234707_4235874_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|256aa|down_6|NZ_CP040247.1_4235955_4236723_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|494aa|down_7|NZ_CP040247.1_4236768_4238250_+	cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde dehydrogenase  AldA-like	NA|196aa|down_8|NZ_CP040247.1_4238774_4239362_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|99aa|down_9|NZ_CP040247.1_4239363_4239660_-	NA
